CK934282

Overview
NameCK934282
Unique NameCK934282
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length703
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934282 vs. ExPASy Swiss-Prot
Match: GRS10_ORYSJ (Monothiol glutaredoxin-S10 OS=Oryza sativa subsp. japonica GN=GRXS10 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.716e-11
Identity = 40/97 (41.24%), Postives = 57/97 (58.76%), Query Frame = 1
Query:  142 RMETVVTRMVAERPVVIFSRSSCSMSHAIKALICSFGANPTVYELDEI-PNGRQIERELVQLGCQPIVPAVFIGQQLVGGAKQVMSLQVTNQLSHLL 429
            RME  V R +A+ PVVI+S+S CS S  +KAL    G  P V ELD++   G Q+++ L +L  Q  VP VFIG + +GG    + L    +L+ +L
Sbjct:   58 RMEDSVKRTLADNPVVIYSKSWCSYSMEVKALFKRIGVQPHVIELDQLGAQGPQLQKVLERLTGQSTVPNVFIGGKHIGGCTDTVKLHRKGELATML 154          
BLAST of CK934282 vs. ExPASy Swiss-Prot
Match: GRC10_ARATH (Glutaredoxin-C10 OS=Arabidopsis thaliana GN=GRXC10 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.241e-11
Identity = 37/102 (36.27%), Postives = 61/102 (59.80%), Query Frame = 1
Query:  148 ETVVTRMVAERPVVIFSR-SSCSMSHAIKALICSFGANPTVYELDEIPNGRQIERELVQLGCQPIVPAVFIGQQLVGGAKQVMSLQVTNQLSHLLIRAGAIW 450
            E+ + R+++E PV+IF+R SSC M H +K L+ + G +PTV E+D+         E+  L  +   P +FIG   VGG + +++L ++ QL   L+  GA+W
Sbjct:   55 ESKIGRLISEHPVIIFTRFSSCCMCHVMKKLLSTVGVHPTVIEIDD--------GEIAYLAVEA-APVLFIGGTCVGGFESLVALHLSGQLIPRLVEVGALW 147          
BLAST of CK934282 vs. ExPASy Swiss-Prot
Match: GRXS5_ORYSJ (Monothiol glutaredoxin-S5 OS=Oryza sativa subsp. japonica GN=GRXS5 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11
Identity = 35/100 (35.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query:  157 VTRMVAERPVVIFSRSSCSMSHAIKALICSFGANPTVYELDEIPNGRQIERELVQLGCQ-PIVPAVFIGQQLVGGAKQVMSLQVTNQLSHLLIRAGAIWI 453
            V R VAE PV++  R  C + H +K L+   G NP V+E+     G    + +V  G +   +PAVF+G +L+GG  ++M++ ++ +L  +L +AGA+W+
Sbjct:   52 VRRAVAESPVLVVGRRGCCLIHVVKRLLQGLGVNPAVHEV----AGEAALKGVVPAGGEAAALPAVFVGGKLLGGLDRLMAVHISGELVPILKKAGALWL 147          
The following BLAST results are available for this feature:
BLAST of CK934282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
GRS10_ORYSJ1.716e-1141.24Monothiol glutaredoxin-S10 OS=Oryza sativa subsp. ... [more]
GRC10_ARATH2.241e-1136.27Glutaredoxin-C10 OS=Arabidopsis thaliana GN=GRXC10... [more]
GRXS5_ORYSJ3.823e-1135.00Monothiol glutaredoxin-S5 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004261_C02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IVF_C02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934282 ID=CK934282; Name=CK934282; organism=Citrus sinensis; type=EST; length=703bp
GGGGACAGCNNNCAAAGCCTAATCCTCAACACACACTACCTAGTAGTCCG
ATCTCATATGTAGAAAACTTGAATTAATTTGCGTTAATTTTCTCACAATA
TACTTGTTTTGTTTTAGTTAGTGGTAAATAAACATCAATAAAGAATGGAG
ACGGTGGTGACAAGGATGGTAGCAGAAAGGCCAGTGGTGATATTCAGCAG
GAGCTCATGCTCGATGAGCCATGCCATAAAGGCACTGATCTGCAGCTTCG
GGGCGAATCCAACGGTATACGAGCTAGATGAAATTCCAAATGGACGGCAG
ATAGAGAGGGAGCTGGTGCAGCTTGGGTGTCAACCGATTGTACCGGCAGT
GTTCATTGGCCAGCAGCTTGTTGGTGGTGCCAAGCAGGTCATGAGCCTCC
AAGTTACCAACCAGCTCAGCCATTTGCTTATAAGGGCCGGAGCCATTTGG
ATTTGATCCATCATGACATCCATTCTAGTTTATTTATAGTACTAGTTATT
TTATTTCAAAGTTTTATATTTCTGACGCCTCTGTTATTAGCTAGCTAGTT
TTACACCATGCATAATGGAGACGATTTCATGATAGCTTAATTTGTAAGTT
CATGTGGACTTTATTTTCTATCCATATTCATGTAACCTAGATAGCTCTTG
ATGAATATTATGTTATCTTCCATCAAAAAAAAAAAAAAAAAAAAAAAAAA
AAA
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