CK934285 | Citrus Genome Database

Overview


Name	CK934285
Unique Name	CK934285
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	595

Libraries


Library Name	Type
Developing fruit peel at 38 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig6283	contig	Csv1_Contig6283:1..595.	BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins

Homology

[Close]

BLAST of CK934285 vs. ExPASy Swiss-Prot
Match: PSBK_NICTO (Photosystem II reaction center protein K OS=Nicotiana tomentosiformis GN=psbK PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.184e-23
Identity = 51/61 (83.61%), Postives = 55/61 (90.16%), Query Frame = 1

Query:  352 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 534
            MLN FSL+ ICLNS L+SSSF F KLPEAYAFLNPIVD+MPVIP+ FFLLAFVWQAAVSFR
Sbjct:    1 MLNTFSLIGICLNSTLFSSSFFFGKLPEAYAFLNPIVDIMPVIPLFFFLLAFVWQAAVSFR 61

[Close]

BLAST of CK934285 vs. ExPASy Swiss-Prot
Match: PSBK_NICSY (Photosystem II reaction center protein K OS=Nicotiana sylvestris GN=psbK PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.184e-23
Identity = 51/61 (83.61%), Postives = 55/61 (90.16%), Query Frame = 1

Query:  352 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 534
            MLN FSL+ ICLNS L+SSSF F KLPEAYAFLNPIVD+MPVIP+ FFLLAFVWQAAVSFR
Sbjct:    1 MLNTFSLIGICLNSTLFSSSFFFGKLPEAYAFLNPIVDIMPVIPLFFFLLAFVWQAAVSFR 61

[Close]

BLAST of CK934285 vs. ExPASy Swiss-Prot
Match: PSBK_CALFG (Photosystem II reaction center protein K OS=Calycanthus floridus var. glaucus GN=psbK PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.200e-22
Identity = 55/61 (90.16%), Postives = 56/61 (91.80%), Query Frame = 1

Query:  352 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 534
            MLNIFSL  ICLNSAL+SSSF FAKLPEAYAF NPIVDVMPVIPVLFFLLA VWQAAVSFR
Sbjct:    1 MLNIFSL--ICLNSALHSSSFFFAKLPEAYAFFNPIVDVMPVIPVLFFLLALVWQAAVSFR 59

[Close]

BLAST of CK934285 vs. ExPASy Swiss-Prot
Match: PSBK_NYMAL (Photosystem II reaction center protein K OS=Nymphaea alba GN=psbK PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.046e-22
Identity = 53/61 (86.89%), Postives = 54/61 (88.52%), Query Frame = 1

Query:  352 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 534
            M NIFSL+ ICLNSAL  S F FAKLPEAYAFLNPIVD MPVIPVLFFLLAFVWQAAVSFR
Sbjct:    1 MPNIFSLICICLNSALQPSGFFFAKLPEAYAFLNPIVDFMPVIPVLFFLLAFVWQAAVSFR 61

[Close]

BLAST of CK934285 vs. ExPASy Swiss-Prot
Match: PSBK_SINAL (Photosystem II reaction center protein K OS=Sinapis alba GN=psbK PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.672e-22
Identity = 51/61 (83.61%), Postives = 56/61 (91.80%), Query Frame = 1

Query:  352 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 534
            MLNIF+L+ IC NSAL+SS+FL AKLPEAYAFLNPIVDVMPVIP+ F LLAFVWQAAVSFR
Sbjct:    1 MLNIFNLICICFNSALFSSTFLVAKLPEAYAFLNPIVDVMPVIPLFFLLLAFVWQAAVSFR 61

[Close]

BLAST of CK934285 vs. ExPASy Swiss-Prot
Match: PSBK_LACSA (Photosystem II reaction center protein K OS=Lactuca sativa GN=psbK PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.672e-22
Identity = 54/61 (88.52%), Postives = 55/61 (90.16%), Query Frame = 1

Query:  352 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 534
            MLNIFSL  ICLNSALY SS  FAKLPEAYAFLNPIVDVMPVIP+ FFLLAFVWQAAVSFR
Sbjct:    1 MLNIFSL--ICLNSALYPSSLFFAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR 59

[Close]

BLAST of CK934285 vs. ExPASy Swiss-Prot
Match: PSBK_HELAN (Photosystem II reaction center protein K OS=Helianthus annuus GN=psbK PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.672e-22
Identity = 54/61 (88.52%), Postives = 55/61 (90.16%), Query Frame = 1

Query:  352 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 534
            MLNIFSL  ICLNSALY SS  FAKLPEAYAFLNPIVDVMPVIP+ FFLLAFVWQAAVSFR
Sbjct:    1 MLNIFSL--ICLNSALYPSSLFFAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR 59

[Close]

BLAST of CK934285 vs. ExPASy Swiss-Prot
Match: PSBK_CUCSA (Photosystem II reaction center protein K OS=Cucumis sativus GN=psbK PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.490e-22
Identity = 52/61 (85.25%), Postives = 54/61 (88.52%), Query Frame = 1

Query:  352 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 534
            MLNI S + ICLNS LYSSSF  AKLPEAYAFLNPIVDVMPVIP+ FFLLAFVWQAAVSFR
Sbjct:    1 MLNILSFIGICLNSFLYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR 61

[Close]

BLAST of CK934285 vs. ExPASy Swiss-Prot
Match: PSBK_SPIOL (Photosystem II reaction center protein K OS=Spinacia oleracea GN=psbK PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 5.953e-22
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 1

Query:  352 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 534
            MLNIFSL  ICLNSALYSSSF F KLPEAYAFL+PIVD MPVIP+ FFLLAFVWQAAVSFR
Sbjct:    1 MLNIFSL--ICLNSALYSSSFFFGKLPEAYAFLSPIVDFMPVIPLFFFLLAFVWQAAVSFR 59

[Close]

BLAST of CK934285 vs. ExPASy Swiss-Prot
Match: PSBK_PELHO (Photosystem II reaction center protein K OS=Pelargonium hortorum GN=psbK PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.953e-22
Identity = 51/61 (83.61%), Postives = 55/61 (90.16%), Query Frame = 1

Query:  352 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 534
            M+NIFS + I L+SALYSSSF F KLPEAYAFLNPIVDVMPVIP+ FFLLAFVWQAAVSFR
Sbjct:    1 MINIFSFICIYLHSALYSSSFFFGKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR 61

The following BLAST results are available for this feature:

BLAST of CK934285 vs. ExPASy Swiss-Prot

BLAST of CK934285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71


Match Name	E-value	Identity	Description
PSBK_NICTO	9.184e-23	83.61	Photosystem II reaction center protein K OS=Nicoti...	[more]
PSBK_NICSY	9.184e-23	83.61	Photosystem II reaction center protein K OS=Nicoti...	[more]
PSBK_CALFG	1.200e-22	90.16	Photosystem II reaction center protein K OS=Calyca...	[more]
PSBK_NYMAL	2.046e-22	86.89	Photosystem II reaction center protein K OS=Nympha...	[more]
PSBK_SINAL	2.672e-22	83.61	Photosystem II reaction center protein K OS=Sinapi...	[more]
PSBK_LACSA	2.672e-22	88.52	Photosystem II reaction center protein K OS=Lactuc...	[more]
PSBK_HELAN	2.672e-22	88.52	Photosystem II reaction center protein K OS=Helian...	[more]
PSBK_CUCSA	3.490e-22	85.25	Photosystem II reaction center protein K OS=Cucumi...	[more]
PSBK_SPIOL	5.953e-22	86.89	Photosystem II reaction center protein K OS=Spinac...	[more]
PSBK_PELHO	5.953e-22	83.61	Photosystem II reaction center protein K OS=Pelarg...	[more]

Pages

Properties


Property Name	Value
Genbank description	CGF1004261_A07 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IVF_A07 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK934285 ID=CK934285; Name=CK934285; organism=Citrus sinensis; type=EST; length=595bp
TTCAATTTCGATTTGGTACTAATAAAGAGTACCAGTGGTATTGGCTGTTC
GTCAATTCCAGTCCAAAGCCCCAAAATTCGATTCTGATTTTAGTGTTAGG
ATTTTGACACATATAGGTGTAAAATACAACTTAATTTATTGATCATTACA
TAGAATTCAATTAAGATATTGTATGAAAGTATGATTTCTTCAATTCTCAC
ACGAGAATAGAAGGATTTTTGTTTTGATTGGGTCGGTTCCAAGAAGTTTT
TTTTGTCTACCTTACTTTCTTTTCTTCATTTTTATCTTATATCAATAAGA
TATTAATAACTCAATCAAAATAAAATTATCTCCAAGAACAAAATGTTTGT
TATGCTTAATATCTTTAGTTTAATGTATATCTGTCTTAATTCTGCCCTTT
ATTCGAGTAGTTTTTTATTCGCTAAATTACCCGAGGCCTACGCTTTTTTG
AATCCAATTGTAGATGTTATGCCAGTAATACCTGTTCTATTTTTTCTCTT
AGCCTTTGTTTGGCAAGCTGCTGTAAGTTTTCGATAAGATCTTTAATATT
GTGCTAGAAAAATTCATGATTTATTCTAGTTCGAAAAAAAAAAAA