CK934288

Overview
NameCK934288
Unique NameCK934288
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1669 contig Csv1_Contig1669:1..746. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934288 vs. ExPASy Swiss-Prot
Match: ACOB_BACSU (Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta OS=Bacillus subtilis GN=acoB PE=3 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 1.261e-31
Identity = 73/154 (47.40%), Postives = 94/154 (61.04%), Query Frame = 2
Query:  284 TTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPL 745
            T GL   FG++RV +TP+ E G +G A+  A+ G R IAE+ F D+I   FDQ++N+ AKFRY  G +     +TVR  YGA       HSQS    F  +PGLK V+P +P  AKGLLL+ I D +PV FFE K  Y +   EVPED Y +PL
Sbjct:   54 TKGLVQEFGRTRVLDTPISEAGYMGAAMAAASTGLRPIAELMFNDFIGTCFDQVINQGAKFRYMFGGKAQV-PITVRTTYGAGFRAAAQHSQSLYGLFTSIPGLKTVVPSNPYDAKGLLLAAIEDNDPVFFFEDKTSYNMK-GEVPEDYYTIPL 205          
BLAST of CK934288 vs. ExPASy Swiss-Prot
Match: ODPB_STAES (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus epidermidis (strain ATCC 12228) GN=pdhB PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.646e-31
Identity = 76/191 (39.79%), Postives = 104/191 (54.45%), Query Frame = 2
Query:  176 LNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPL 745
            + +  AIN AL   L+ D                 R T GL   FG+ RVF+TPL E GI G A+GLA  G R + EIQF  +++  FD++  + A+ R+RSG       +T+R P+G   H    H+ + E      PGLKVVIP  P  AKGLL+S I+  +PVV+ E   LYR   EEVPE++Y + +
Sbjct:    4 MTMVQAINDALKSELKRDEDVLVFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLALGLAVTGFRPVMEIQFLGFVYEVFDEVAGQIARTRFRSGGT-KPAPVTIRTPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIQSNDPVVYLEHMKLYRSFREEVPEEEYKIDI 193          
BLAST of CK934288 vs. ExPASy Swiss-Prot
Match: ODPB_STAEQ (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=pdhB PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.646e-31
Identity = 76/191 (39.79%), Postives = 104/191 (54.45%), Query Frame = 2
Query:  176 LNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPL 745
            + +  AIN AL   L+ D                 R T GL   FG+ RVF+TPL E GI G A+GLA  G R + EIQF  +++  FD++  + A+ R+RSG       +T+R P+G   H    H+ + E      PGLKVVIP  P  AKGLL+S I+  +PVV+ E   LYR   EEVPE++Y + +
Sbjct:    4 MTMVQAINDALKSELKRDEDVLVFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLALGLAVTGFRPVMEIQFLGFVYEVFDEVAGQIARTRFRSGGT-KPAPVTIRTPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIQSNDPVVYLEHMKLYRSFREEVPEEEYKIDI 193          
BLAST of CK934288 vs. ExPASy Swiss-Prot
Match: ODPB_MYCPN (Pyruvate dehydrogenase E1 component subunit beta OS=Mycoplasma pneumoniae GN=pdhB PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.377e-30
Identity = 72/190 (37.89%), Postives = 103/190 (54.21%), Query Frame = 2
Query:  179 NLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPL 745
            N   A+  A+ +ALE DP                R T GL  ++G+ RV++ P+ E  + G  +G A  G + I EIQF+ + FPA  QI   AA+ R RS   + C  + VR P G       +HS++ EA +  + GLK V+P +P   KGL L+ +  P+PVVFFEPK LYR   +E+P D Y +P+
Sbjct:    8 NNIEALGNAMDLALERDPNVVLYGQDAGFEGGVFRATKGLQKKYGEERVWDCPIAEAAMAGIGVGAAIGGLKPIVEIQFSGFSFPAMFQIFTHAARIRNRSRGVYTCP-IIVRMPMGGGIKALEHHSETLEAIYGQIAGLKTVMPSNPYDTKGLFLAAVESPDPVVFFEPKKLYRAFRQEIPADYYTVPI 196          
BLAST of CK934288 vs. ExPASy Swiss-Prot
Match: ODPB_MYCGE (Pyruvate dehydrogenase E1 component subunit beta OS=Mycoplasma genitalium GN=pdhB PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 9.034e-30
Identity = 72/191 (37.70%), Postives = 102/191 (53.40%), Query Frame = 2
Query:  176 LNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPL 745
            +N   A+N A+ +ALE D                 R T GL  ++G  RV++ P+ E  + G  +G A  G + I EIQF+ + FPA  QI   AA+ R RS   +    L VR P G       +HS++ EA +  + GLK V+P +P   KGL L+ I  P+PV+FFEPK LYR   +E+P D Y +P+
Sbjct:    6 VNNIEALNNAMDLALERDQNVVLYGQDAGFEGGVFRATKGLQQKYGSERVWDCPIAENSMAGIGVGAAIGGLKPIVEIQFSGFSFPAMFQIFVHAARIRNRSRGVYTAP-LVVRMPMGGGIKALEHHSETLEAIYAQIAGLKTVMPSNPYDTKGLFLAAIESPDPVIFFEPKKLYRAFRQEIPSDYYTVPI 195          
BLAST of CK934288 vs. ExPASy Swiss-Prot
Match: ODPB_RHIME (Pyruvate dehydrogenase E1 component subunit beta OS=Rhizobium meliloti GN=pdhB PE=3 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.305e-28
Identity = 68/156 (43.59%), Postives = 87/156 (55.77%), Query Frame = 2
Query:  278 RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPL 745
            + T GL   FG  RV +TP+ E G  G  +G A  G R I E    ++   A DQI+N AAK  Y SG Q     +  R P GA       HSQ   A++ H+PGLKVV+P +   AKGLL + IRDPNPV+F E + LY  S E    DD++LP+
Sbjct:  173 KVTQGLLQEFGARRVVDTPITEHGFAGVGVGAAMTGLRPIVEFMTFNFAMQAIDQIINSAAKTLYMSGGQMGAP-IVFRGPSGAAARVAAQHSQCYAAWYSHIPGLKVVMPYTAADAKGLLKAAIRDPNPVIFLENEILYGQSFEVPKLDDFVLPI 327          
BLAST of CK934288 vs. ExPASy Swiss-Prot
Match: ODPB_CHAVU (Pyruvate dehydrogenase E1 component subunit beta OS=Chara vulgaris GN=pdhB PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.305e-28
Identity = 71/189 (37.57%), Postives = 101/189 (53.44%), Query Frame = 2
Query:  182 LYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPL 745
            LY A+N+ +H  +E DP+ +             + T GL +++G  R+ +TP+ E    G AIG A  G R I E     ++  AF+QI N A    Y SG  F    L VR P G     G  HSQ  E++F  VPGL++V   +P  AKGL+ S IR  NP++FFE   LY +  E +P+ +Y++PL
Sbjct:    6 LYEALNEGIHEEIERDPKVFVIGEDIGHYGGSYKVTKGLFEKYGNLRILDTPIAENSFTGIAIGAAMTGLRPIIEGMNMGFLLLAFNQIANNAGMLHYTSGGNFTTP-LVVRGPGGVGRQLGAEHSQRLESYFQSVPGLQMVACSTPYNAKGLIKSAIRSQNPIIFFEHVLLYNIK-ENIPQKEYLVPL 192          
BLAST of CK934288 vs. ExPASy Swiss-Prot
Match: ODPB_PORPU (Pyruvate dehydrogenase E1 component subunit beta OS=Porphyra purpurea GN=pdhB PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.225e-28
Identity = 72/156 (46.15%), Postives = 89/156 (57.05%), Query Frame = 2
Query:  278 RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPL 745
            + T  L  ++G  RV +TP+ E    G AIG A  G R I E     ++  AF+QI N A   RY SG  F    L +R P G     G  HSQ  EA+F  +PGLK+V   +P  AKGLL S IRD NPVVFFE   LY L  EE+PED+Y++PL
Sbjct:   39 KVTKDLHSKYGDLRVLDTPIAENSFTGMAIGAAITGLRPIVEGMNMSFLLLAFNQISNNAGMLRYTSGGNFTLP-LVIRGPGGVGRQLGAEHSQRLEAYFQAIPGLKIVACSTPYNAKGLLKSAIRDNNPVVFFEHVLLYNLQ-EEIPEDEYLIPL 192          
BLAST of CK934288 vs. ExPASy Swiss-Prot
Match: ODPB_LEIXX (Pyruvate dehydrogenase E1 component subunit beta OS=Leifsonia xyli subsp. xyli GN=pdhB PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.957e-28
Identity = 72/179 (40.22%), Postives = 96/179 (53.63%), Query Frame = 2
Query:  170 KSLNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGG--HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLY 697
            +SL +  A+N  L  AL  DP+               R T GL   FG SRV +TPL E GIVG AIGLA  G R + EIQF  ++FP FDQI  + AK   R     +   + +R P+G  GH G   +H ++PEA+F H  GL++V P +P  A  ++   I   +PV+FFEP   Y
Sbjct:   15 QSLPMVKALNAGLRQALVADPKVLILGEDVGPLGGVFRVTEGLQSEFGASRVVDTPLAEAGIVGTAIGLAMRGYRPVVEIQFNGFVFPGFDQITTQLAKMANRHSGAVSM-PVVIRIPHG--GHIGAVEHHQEAPEAYFAHTAGLRIVAPSTPHDAYWMIQEAIASDDPVIFFEPMSRY 190          
BLAST of CK934288 vs. ExPASy Swiss-Prot
Match: ODPB_RICFE (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia felis GN=pdhB PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.442e-27
Identity = 70/155 (45.16%), Postives = 87/155 (56.13%), Query Frame = 2
Query:  278 RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLP 742
            + T GL ++FG  RV +TP+ E G  G A+G A  G R I E    ++   AFD IVN AAK  Y SG Q  C  +  R P GA       HSQ+  A + HVPGLKVV P S    KGL+L+ IRD NPV+F E + LY  S  +VPE    +P
Sbjct:   38 KVTQGLLEQFGPKRVIDTPITEYGFAGLAVGAAFAGLRPIVEFMTFNFAMQAFDHIVNSAAKTHYMSGGQAKC-PIVFRGPNGAASRVAAQHSQNYTACYSHVPGLKVVAPYSAEDHKGLMLTAIRDDNPVIFLENEILYGHSF-DVPETIEPIP 190          
The following BLAST results are available for this feature:
BLAST of CK934288 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ACOB_BACSU1.261e-3147.40Acetoin:2,6-dichlorophenolindophenol oxidoreductas... [more]
ODPB_STAES1.646e-3139.79Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAEQ1.646e-3139.79Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_MYCPN2.377e-3037.89Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_MYCGE9.034e-3037.70Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RHIME1.305e-2843.59Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CHAVU1.305e-2837.57Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_PORPU2.225e-2846.15Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_LEIXX4.957e-2840.22Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICFE1.442e-2745.16Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004261_A11 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IVF_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934288 ID=CK934288; Name=CK934288; organism=Citrus sinensis; type=EST; length=746bp
GGGGGAATTCAATATTTGCAAACTCCACAACCAAAAATCTTGGCGGAGAT
TTCACTATATGGCTTCTGGTTTGAGAAGATTTGTGGGTTCCCTTTCACGG
AGAAATCTTTCAACTGCTTGTGCGAACAAGCAGCTAATTCAACAACACGA
TGGGGGTGTTGGCAGTGGCAAGTCTTTGAATTTGTACTCTGCCATCAACC
AGGCTCTTCATATTGCTTTGGAAACTGATCCACGTGCTTATGTGTTTGGA
GAAGATGTGGGCTTTGGTGGAGTCTTCCGATGCACGACAGGATTAGCTGA
TCGATTTGGTAAAAGTCGGGTATTCAATACCCCTCTTTGTGAACAGGGCA
TCGTTGGGTTTGCCATTGGTCTGGCAGCTATGGGAAATCGAGCTATAGCT
GAAATTCAATTTGCAGATTATATTTTTCCAGCTTTTGATCAGATTGTCAA
TGAAGCTGCTAAGTTCAGATACAGGAGTGGAAATCAATTTAATTGTGGAG
GATTAACAGTAAGAGCCCCTTACGGAGCTGTGGGCCATGGTGGACACTAT
CACTCGCAATCTCCTGAAGCTTTCTTTTGTCACGTTCCTGGTCTCAAAGT
GGTCATCCCTCGAAGCCCACGACAAGCAAAAGGATTATTGCTGTCATGCA
TTCGTGATCCGAACCCTGTTGTCTTTTTTGAGCCAAAGTGGCTTTACCGT
TTGTCTGTAGAAGAGGTTCCTGAGGATGATTATATGTTGCCTTTAT
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