CK934288

Overview
NameCK934288
Unique NameCK934288
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1669 contig Csv1_Contig1669:1..746. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934288 vs. ExPASy Swiss-Prot
Match: ODPB_PORYE (Pyruvate dehydrogenase E1 component subunit beta OS=Porphyra yezoensis GN=pdhB PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.442e-27
Identity = 71/156 (45.51%), Postives = 88/156 (56.41%), Query Frame = 2
Query:  278 RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPL 745
            + T  L  ++G  RV +TP+ E    G AIG A  G R I E     ++  AF+QI N A   RY SG  F    L +R P G     G  HSQ  EA+F  +PGLK+V   +P  AKGLL S IRD NPVVFFE   LY L  EE+P+++Y LPL
Sbjct:   39 KVTKDLHSKYGDLRVLDTPIAENSFTGMAIGAAITGLRPIVEGMNMSFLLLAFNQISNNAGMLRYTSGGNFTLP-LVIRGPGGVGRQLGAEHSQRLEAYFQAIPGLKIVACSTPYNAKGLLKSAIRDNNPVVFFEHVLLYNLQ-EEIPQEEYFLPL 192          
BLAST of CK934288 vs. ExPASy Swiss-Prot
Match: ACOB_RALEH (Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=acoB PE=1 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 2.460e-27
Identity = 73/153 (47.71%), Postives = 89/153 (58.17%), Query Frame = 2
Query:  284 TTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLP 742
            T GL  + G  R+ +TPL E   VG AIG AA G R IAE+ F D++   FDQI N+AAKFRY  G +     + +RA  GA       HSQ     F H+PGLKVV P +P   KGLL+  IRD +PV+F E K LY L   EVPE  Y +P
Sbjct:   52 TKGLYAKHG-DRLLDTPLSESAYVGAAIGAAACGMRPIAELMFIDFMGVCFDQIFNQAAKFRYMFGGKAETP-VVIRAMVGAGFRAAAQHSQMLTPLFTHIPGLKVVCPSTPYDTKGLLIQAIRDNDPVIFCEHKNLYGLE-GEVPEGAYAIP 201          
BLAST of CK934288 vs. ExPASy Swiss-Prot
Match: ODPB_RICTY (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia typhi GN=pdhB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.213e-27
Identity = 67/149 (44.97%), Postives = 85/149 (57.05%), Query Frame = 2
Query:  278 RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPE 724
            + T GL ++FG  RV +TP+ E G  G A+G A  G R I E    ++   AFD IVN AAK  Y SG Q  C  +  R P GA       HSQ+  A + H+PGLKVV P S    KGL+L+ IRD NPV+F E + LY  S  +VP+
Sbjct:   38 KVTQGLLEQFGSKRVIDTPITEYGFAGLAVGAAFAGLRPIVEFMTFNFAMQAFDHIVNSAAKTHYMSGGQVKC-PIVFRGPNGAASRVAAQHSQNYTACYSHIPGLKVVAPYSAEDHKGLMLTAIRDDNPVIFLENEILYGHSF-DVPD 184          
BLAST of CK934288 vs. ExPASy Swiss-Prot
Match: ODPB_RICPR (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia prowazekii GN=pdhB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.213e-27
Identity = 67/149 (44.97%), Postives = 85/149 (57.05%), Query Frame = 2
Query:  278 RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPE 724
            + T GL ++FG  RV +TP+ E G  G A+G A  G R I E    ++   AFD IVN AAK  Y SG Q  C  +  R P GA       HSQ+  A + H+PGLKVV P S    KGL+L+ IRD NPV+F E + LY  S  +VP+
Sbjct:   38 KVTQGLLEQFGSKRVIDTPITEYGFAGLAVGAAFAGLRPIVEFMTFNFAMQAFDHIVNSAAKTHYMSGGQVKC-PIVFRGPNGAASRVAAQHSQNYTACYSHIPGLKVVAPYSAEDHKGLMLTAIRDDNPVIFLENEILYGHSF-DVPD 184          
BLAST of CK934288 vs. ExPASy Swiss-Prot
Match: ODPB_RICCN (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia conorii GN=pdhB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.213e-27
Identity = 69/155 (44.52%), Postives = 87/155 (56.13%), Query Frame = 2
Query:  278 RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLP 742
            + T GL ++FG  RV +TP+ E G  G A+G A  G R I E    ++   AFD IVN AAK  Y SG Q  C  +  R P GA       HSQ+  A + H+PGLKVV P S    KGL+L+ IRD NPVVF E + LY  S  +VP+    +P
Sbjct:   38 KVTQGLLEQFGPKRVIDTPITEYGFAGLAVGAAFAGLRPIVEFMTFNFAMQAFDHIVNSAAKTHYMSGGQVKC-PIVFRGPNGAASRVAAQHSQNYTACYSHIPGLKVVAPYSAEDHKGLMLTAIRDDNPVVFLENEILYGHSF-DVPKTIEPIP 190          
BLAST of CK934288 vs. ExPASy Swiss-Prot
Match: ODPB_GRATL (Pyruvate dehydrogenase E1 component subunit beta OS=Gracilaria tenuistipitata var. liui GN=pdhB PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.481e-27
Identity = 69/156 (44.23%), Postives = 88/156 (56.41%), Query Frame = 2
Query:  278 RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPL 745
            + T  L  ++G  RV +TP+ E   +G AIG A  G R I E     ++  AF+QI N A   RY SG  F    + +R P G     G  HSQ  EA+F  +PGLK+V   +P  AKGLL S IRD NPV+FFE   LY L  +E+P D+Y LPL
Sbjct:   39 KVTKDLHSKYGDLRVLDTPIAENSFMGMAIGAAITGLRPIVEGMNMSFLLLAFNQISNNAGMLRYTSGGNFQIP-IVIRGPGGVGRQLGAEHSQRLEAYFQAIPGLKIVACSTPYNAKGLLKSAIRDNNPVIFFEHVLLYNLK-DELPNDEYFLPL 192          
BLAST of CK934288 vs. ExPASy Swiss-Prot
Match: ODPB_ARATH (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Arabidopsis thaliana GN=PDH2 PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 9.349e-27
Identity = 69/196 (35.20%), Postives = 100/196 (51.02%), Query Frame = 2
Query:  170 KSLNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSV---EEVPEDDYMLPL 745
            K + +  A+N A+   +  DP+ +             + T GL +++G  RV++TP+ E G  G  +G A  G + + E    ++   A D I+N AAK  Y S  Q N   +  R P GA    G  HSQ   A++  VPGLKV+ P S   A+GLL + IRDP+PVVF E + LY  S    EE  +  + LP+
Sbjct:   34 KEMTVRDALNSAIDEEMSADPKVFVMGEEVGQYQGAYKITKGLLEKYGPERVYDTPITEAGFTGIGVGAAYAGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQINVP-IVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLAPYSAEDARGLLKAAIRDPDPVVFLENELLYGESFPISEEALDSSFCLPI 228          
BLAST of CK934288 vs. ExPASy Swiss-Prot
Match: ODPB_YEAST (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Saccharomyces cerevisiae GN=PDB1 PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.595e-26
Identity = 73/197 (37.06%), Postives = 101/197 (51.27%), Query Frame = 2
Query:  164 SGKSLNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSV---EEVPEDDYMLP 742
            S K++ +  A+N A+   L+ D   +             + + GL DRFG+ RV +TP+ E G  G A+G A  G + I E    ++   A D +VN AAK  Y SG    C  +  R P GA    G  HSQ    ++  +PGLKV++P S   A+GLL + IRDPNPVVF E + LY  S    EE    ++ LP
Sbjct:   35 STKTMTVREALNSAMAEELDRDDDVFLIGEEVAQYNGAYKVSKGLLDRFGERRVVDTPITEYGFTGLAVGAALKGLKPIVEFMSFNFSMQAIDHVVNSAAKTHYMSGGTQKCQ-MVFRGPNGAAVGVGAQHSQDFSPWYGSIPGLKVLVPYSAEDARGLLKAAIRDPNPVVFLENELLYGESFEISEEALSPEFTLP 230          
BLAST of CK934288 vs. ExPASy Swiss-Prot
Match: ODPB_CAEEL (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Caenorhabditis elegans GN=C04C3.3 PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 6.060e-26
Identity = 74/213 (34.74%), Postives = 105/213 (49.30%), Query Frame = 2
Query:  119 CANKQLIQQHDGGVGSGKSLNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSV---EEVPEDDYMLPL 745
            C N  + +       +  ++ +  A+NQA+   ++ D R +             + + GL  + G  RV +TP+ E G  G A+G A  G R I E    ++   A DQI+N AAK  Y S  +     +  R P GA       HSQ   A++ H PGLKVV P S   AKGLL + IRD NPVVF E + LY  S    +EV  DD+++P+
Sbjct:    6 CGNLFVARLAGTSTRAASTMTVRDALNQAMDEEIKRDDRVFLMGEEVAQYDGAYKISKGLWKKHGDKRVVDTPITEMGFAGIAVGAAFAGLRPICEFMTFNFSMQAIDQIINSAAKTYYMSAGRVPVP-IVFRGPNGAAAGVAAQHSQDFSAWYAHCPGLKVVCPYSAEDAKGLLKAAIRDDNPVVFLENEILYGQSFPVGDEVLSDDFVVPI 217          
BLAST of CK934288 vs. ExPASy Swiss-Prot
Match: ODPB_RICBR (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia bellii (strain RML369-C) GN=pdhB PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.303e-25
Identity = 61/140 (43.57%), Postives = 79/140 (56.43%), Query Frame = 2
Query:  278 RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLY 697
            + T GL ++FG  RV +TP+ E G  G A+G A  G R I E    ++   A D IVN AAK  Y SG Q  C  +  R P GA       HSQ+  A + ++PGLKVV P S    KGL+++ IRD NPV+F E + LY
Sbjct:   38 KVTQGLLEQFGPKRVIDTPITEYGFAGLAVGAAFAGLRPIVEFMTFNFAMQAMDHIVNSAAKTHYMSGGQVRC-PIVFRGPNGAASRVAAQHSQNYAACYSYIPGLKVVAPYSAEDHKGLMITAIRDDNPVIFLENEILY 176          
The following BLAST results are available for this feature:
BLAST of CK934288 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODPB_PORYE1.442e-2745.51Pyruvate dehydrogenase E1 component subunit beta O... [more]
ACOB_RALEH2.460e-2747.71Acetoin:2,6-dichlorophenolindophenol oxidoreductas... [more]
ODPB_RICTY3.213e-2744.97Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICPR3.213e-2744.97Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICCN3.213e-2744.52Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_GRATL5.481e-2744.23Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_ARATH9.349e-2735.20Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_YEAST1.595e-2637.06Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_CAEEL6.060e-2634.74Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_RICBR2.303e-2543.57Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004261_A11 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IVF_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934288 ID=CK934288; Name=CK934288; organism=Citrus sinensis; type=EST; length=746bp
GGGGGAATTCAATATTTGCAAACTCCACAACCAAAAATCTTGGCGGAGAT
TTCACTATATGGCTTCTGGTTTGAGAAGATTTGTGGGTTCCCTTTCACGG
AGAAATCTTTCAACTGCTTGTGCGAACAAGCAGCTAATTCAACAACACGA
TGGGGGTGTTGGCAGTGGCAAGTCTTTGAATTTGTACTCTGCCATCAACC
AGGCTCTTCATATTGCTTTGGAAACTGATCCACGTGCTTATGTGTTTGGA
GAAGATGTGGGCTTTGGTGGAGTCTTCCGATGCACGACAGGATTAGCTGA
TCGATTTGGTAAAAGTCGGGTATTCAATACCCCTCTTTGTGAACAGGGCA
TCGTTGGGTTTGCCATTGGTCTGGCAGCTATGGGAAATCGAGCTATAGCT
GAAATTCAATTTGCAGATTATATTTTTCCAGCTTTTGATCAGATTGTCAA
TGAAGCTGCTAAGTTCAGATACAGGAGTGGAAATCAATTTAATTGTGGAG
GATTAACAGTAAGAGCCCCTTACGGAGCTGTGGGCCATGGTGGACACTAT
CACTCGCAATCTCCTGAAGCTTTCTTTTGTCACGTTCCTGGTCTCAAAGT
GGTCATCCCTCGAAGCCCACGACAAGCAAAAGGATTATTGCTGTCATGCA
TTCGTGATCCGAACCCTGTTGTCTTTTTTGAGCCAAAGTGGCTTTACCGT
TTGTCTGTAGAAGAGGTTCCTGAGGATGATTATATGTTGCCTTTAT
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