CK934288

Overview
NameCK934288
Unique NameCK934288
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1669 contig Csv1_Contig1669:1..746. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934288 vs. ExPASy Swiss-Prot
Match: ODPB_ZYGCR (Pyruvate dehydrogenase E1 component subunit beta OS=Zygnema circumcarinatum GN=pdhB PE=3 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.143e-24
Identity = 67/189 (35.45%), Postives = 97/189 (51.32%), Query Frame = 2
Query:  182 LYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPL 745
            L+ A+ Q L   ++ DPR               + T G A+R+G  R+ +TP+ E    G AIG A  G R + E     ++  AF+QI N A    Y SG  F    + +R P G     G  HSQ  E++F  VPGL++V   +P  AKGL+ S IR  NP++ FE   LY L  E++ E++Y++ L
Sbjct:    6 LFEALRQGLQEEMDRDPRVMVMGEDVGHYGGSYKVTKGFAERYGDLRLLDTPIAENSFTGMAIGAAMTGLRPVVEGMNMGFLLLAFNQIANNAGMLHYTSGGNFTIP-IVIRGPGGVGRQLGAEHSQRLESYFQSVPGLQMVACSTPYNAKGLIKSAIRSDNPIILFEHVLLYNLK-EDLAEEEYLVCL 192          
BLAST of CK934288 vs. ExPASy Swiss-Prot
Match: ODPB_CYAME (Pyruvate dehydrogenase E1 component subunit beta OS=Cyanidioschyzon merolae GN=pdhB PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.343e-24
Identity = 69/191 (36.13%), Postives = 98/191 (51.31%), Query Frame = 2
Query:  176 LNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPL 745
            L +Y A+ +A+   +  D R +             + T  L  ++G  RV +TP+ E    G AIG A  G + + E     ++  AF+QI N A    Y SG  ++   L +R P G        HSQ  EA+F  VPGLK+V   +P  AKGLL + IRD NPV+F E   LY L  +E+P+ +Y+LPL
Sbjct:    5 LFMYEALREAIDEEMARDKRVFVLGEDVGHYGGSYKVTKQLHTKYGDLRVLDTPIAENSFTGMAIGAAMTGLKPVVEGMNLSFLLLAFNQISNNAGMLHYTSGGNWSIP-LVIRGPGGIGKQLSAEHSQRIEAYFQAVPGLKIVACSTPYNAKGLLKAAIRDNNPVLFLEHVLLYNLK-QEIPKQEYVLPL 193          
BLAST of CK934288 vs. ExPASy Swiss-Prot
Match: ODPB_ASCSU (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Ascaris suum PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.343e-24
Identity = 70/221 (31.67%), Postives = 110/221 (49.77%), Query Frame = 2
Query:   92 LSRRNLSTACANKQLIQQHDGGVGSGKSLNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPE---DDYMLP 742
            L R  L++ACA +Q +++   G     ++ +  A+N AL   ++ D R +             + + GL  ++G  R+++TP+ E  I G ++G A  G R I E    ++     D I+N AAK  Y S  +F+   +  R   GA       HSQ   A+F H PG+KVV+P     A+GLL + +RD NPV+  E + LY +     PE    D++LP
Sbjct:    9 LLRNGLTSACALEQSVRRLASGT---LNVTVRDALNAALDEEIKRDDRVFLIGEEVAQYDGAYKISKGLWKKYGDGRIWDTPITEMAIAGLSVGAAMNGLRPICEFMSMNFSMQGIDHIINSAAKAHYMSAGRFHVP-IVFRGANGAAVGVAQQHSQDFTAWFMHCPGVKVVVPYDCEDARGLLKAAVRDDNPVICLENEILYGMKFPVSPEAQSPDFVLP 225          
BLAST of CK934288 vs. ExPASy Swiss-Prot
Match: ODPB_BOVIN (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Bos taurus GN=PDHB PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 7.408e-24
Identity = 68/189 (35.98%), Postives = 94/189 (49.74%), Query Frame = 2
Query:  191 AINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVE---EVPEDDYMLPL 745
            AINQ +   LE D + +             + + GL  ++G  R+ +TP+ E G  G A+G A  G R I E    ++   A DQ++N AAK  Y SG       +  R P GA       HSQ   A++ H PGLKVV P S   AKGL+ S IRD NPVV  E + +Y +  E   E    D+++P+
Sbjct:   38 AINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGG-LQSVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWSSEDAKGLIKSAIRDNNPVVVLENELMYGVPFELPSEAQSKDFLIPI 225          
BLAST of CK934288 vs. ExPASy Swiss-Prot
Match: ODPB_SCHPO (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Schizosaccharomyces pombe GN=pdb1 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.675e-24
Identity = 73/228 (32.02%), Postives = 109/228 (47.81%), Query Frame = 2
Query:   71 LRRFVGSLSRRNLSTACANKQLIQQHDGGVGSGKSLNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSV---EEVPEDDYMLP 742
            L++F G +   + S    +  + +++       K + +  A+N A+   ++ D R +             + + GL D+FG  RV +TP+ E G  G A G A  G R I E    ++   A D IVN AA+  Y SG    C  +  R P G        HSQ    ++  +PGLKVV P S   A+GLL + IRDPNPVV  E + LY  +    +E   +D++LP
Sbjct:    4 LQKF-GEIVGTSRSWKLLSSTIAKRYSSSSNGVKEMTVRDALNSAMEEEMKRDDRVFLIGEEVAQYNGAYKISRGLLDKFGPKRVIDTPITEMGFTGLATGAAFAGLRPICEFMTFNFSMQAIDHIVNSAARTLYMSGGIQAC-PIVFRGPNGPAAAVAAQHSQHFAPWYGSIPGLKVVSPYSAEDARGLLKAAIRDPNPVVVLENEILYGKTFPISKEALSEDFVLP 229          
BLAST of CK934288 vs. ExPASy Swiss-Prot
Match: ODPB_HUMAN (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Homo sapiens GN=PDHB PE=1 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 9.675e-24
Identity = 78/229 (34.06%), Postives = 107/229 (46.72%), Query Frame = 2
Query:   71 LRRFVGSLSRRNLSTACANKQLIQQHDGGVGSGKSLNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPE---DDYMLPL 745
            LR   G L RR   TA A  Q+               +  AINQ +   LE D + +             + + GL  ++G  R+ +TP+ E G  G A+G A  G R I E    ++   A DQ++N AAK  Y SG       +  R P GA       HSQ   A++ H PGLKVV P +   AKGL+ S IRD NPVV  E + +Y +  E  PE    D+++P+
Sbjct:   12 LREVSGLLKRRFHWTAPAALQV--------------TVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGG-LQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPI 225          
BLAST of CK934288 vs. ExPASy Swiss-Prot
Match: ODPB_STAPU (Pyruvate dehydrogenase E1 component subunit beta OS=Staurastrum punctulatum GN=pdhB PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.264e-23
Identity = 65/189 (34.39%), Postives = 97/189 (51.32%), Query Frame = 2
Query:  182 LYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPL 745
            L+ A+ + L   ++ DP+               + T G A+++G  R+ +TP+ E    G AIG A  G R + E     ++  AF+QI N A    Y SG  F    + +R P G     G  HSQ  E++F  VPGL++V   +P  AKGL+ S IR  NPV+ FE   LY L  E +P+++Y++ L
Sbjct:    6 LFEALREGLQEEMDRDPKVLVMGEDVGHYGGSYKVTKGFAEKYGDLRLLDTPIAENSFTGMAIGAAMTGLRPVVEGMNMGFLLLAFNQIANNAGMLHYTSGANFTIP-IVIRGPGGVGRQLGAEHSQRLESYFQSVPGLQLVACSTPINAKGLIKSSIRSENPVILFEHVLLYNLK-ETIPDNEYLVCL 192          
BLAST of CK934288 vs. ExPASy Swiss-Prot
Match: ODPB_PONAB (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Pongo abelii GN=PDHB PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.264e-23
Identity = 68/189 (35.98%), Postives = 95/189 (50.26%), Query Frame = 2
Query:  191 AINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPE---DDYMLPL 745
            AINQ +   LE D + +             + + GL  ++G  R+ +TP+ E G  G A+G A  G R I E    ++   A DQ++N AAK  Y SG       +  R P GA       HSQ   A++ H PGLKVV P +   AKGL+ S IRD NPVV  E + +Y +  E  PE    D+++P+
Sbjct:   38 AINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGG-LQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPI 225          
BLAST of CK934288 vs. ExPASy Swiss-Prot
Match: ODPB_RAT (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Rattus norvegicus GN=Pdhb PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.155e-23
Identity = 67/194 (34.54%), Postives = 96/194 (49.48%), Query Frame = 2
Query:  176 LNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVE---EVPEDDYMLPL 745
            L +  AINQ +   LE D + +             + + GL  ++G  R+ +TP+ E G  G A+G A  G R I E    ++   A DQ++N AAK  Y S        +  R P GA       HSQ   A++ H PGLKVV P +   AKGL+ S IRD NPVV  E + +Y ++ E   E    D+++P+
Sbjct:   33 LTVREAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSAG-LQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDDNPVVMLENELMYGVAFELPTEAQSKDFLIPI 225          
BLAST of CK934288 vs. ExPASy Swiss-Prot
Match: ODPB_DICDI (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Dictyostelium discoideum GN=pdhB PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.155e-23
Identity = 69/197 (35.03%), Postives = 98/197 (49.75%), Query Frame = 2
Query:  170 KSLNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQ-FNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSV---EEVPEDDYMLPL 745
            K + +  AIN AL   L  D + +             + T GL D++G  R+ +TP+ E G  G  +G A  G R I E    ++   A D I+N +AK  Y SG + FN   +  R P G     G  HSQ   A++  VPGLKVV P S    +GLL S IRD NPVV+ E + LY       ++  + +Y++P+
Sbjct:   27 KEVTVRDAINSALDEELARDEKVFIMGEEVAQYNGAYKITKGLFDKYGGDRIIDTPITEAGFAGIGVGAAMAGTRPIIEFMTFNFAMQAIDHIINSSAKTHYMSGGKVFN--PIVWRGPNGPPTAVGAQHSQCFAAWYGSVPGLKVVAPWSAADHRGLLKSAIRDDNPVVYLESELLYNYKFDLSDQEQDKEYLVPI 221          
The following BLAST results are available for this feature:
BLAST of CK934288 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODPB_ZYGCR1.143e-2435.45Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CYAME4.343e-2436.13Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_ASCSU4.343e-2431.67Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_BOVIN7.408e-2435.98Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_SCHPO9.675e-2432.02Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_HUMAN9.675e-2434.06Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_STAPU1.264e-2334.39Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_PONAB1.264e-2335.98Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_RAT2.155e-2334.54Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_DICDI2.155e-2335.03Pyruvate dehydrogenase E1 component subunit beta, ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004261_A11 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IVF_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934288 ID=CK934288; Name=CK934288; organism=Citrus sinensis; type=EST; length=746bp
GGGGGAATTCAATATTTGCAAACTCCACAACCAAAAATCTTGGCGGAGAT
TTCACTATATGGCTTCTGGTTTGAGAAGATTTGTGGGTTCCCTTTCACGG
AGAAATCTTTCAACTGCTTGTGCGAACAAGCAGCTAATTCAACAACACGA
TGGGGGTGTTGGCAGTGGCAAGTCTTTGAATTTGTACTCTGCCATCAACC
AGGCTCTTCATATTGCTTTGGAAACTGATCCACGTGCTTATGTGTTTGGA
GAAGATGTGGGCTTTGGTGGAGTCTTCCGATGCACGACAGGATTAGCTGA
TCGATTTGGTAAAAGTCGGGTATTCAATACCCCTCTTTGTGAACAGGGCA
TCGTTGGGTTTGCCATTGGTCTGGCAGCTATGGGAAATCGAGCTATAGCT
GAAATTCAATTTGCAGATTATATTTTTCCAGCTTTTGATCAGATTGTCAA
TGAAGCTGCTAAGTTCAGATACAGGAGTGGAAATCAATTTAATTGTGGAG
GATTAACAGTAAGAGCCCCTTACGGAGCTGTGGGCCATGGTGGACACTAT
CACTCGCAATCTCCTGAAGCTTTCTTTTGTCACGTTCCTGGTCTCAAAGT
GGTCATCCCTCGAAGCCCACGACAAGCAAAAGGATTATTGCTGTCATGCA
TTCGTGATCCGAACCCTGTTGTCTTTTTTGAGCCAAAGTGGCTTTACCGT
TTGTCTGTAGAAGAGGTTCCTGAGGATGATTATATGTTGCCTTTAT
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