CK934288

Overview
NameCK934288
Unique NameCK934288
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1669 contig Csv1_Contig1669:1..746. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934288 vs. ExPASy Swiss-Prot
Match: ODPB_MOUSE (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Mus musculus GN=Pdhb PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.815e-23
Identity = 67/194 (34.54%), Postives = 96/194 (49.48%), Query Frame = 2
Query:  176 LNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVE---EVPEDDYMLPL 745
            L +  AINQ +   LE D + +             + + GL  ++G  R+ +TP+ E G  G A+G A  G R I E    ++   A DQ++N AAK  Y S        +  R P GA       HSQ   A++ H PGLKVV P +   AKGL+ S IRD NPVV  E + +Y ++ E   E    D+++P+
Sbjct:   33 LTVREAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSAG-LQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVMLENELMYGVAFELPAEAQSKDFLIPI 225          
BLAST of CK934288 vs. ExPASy Swiss-Prot
Match: ODPB_CHAGL (Pyruvate dehydrogenase E1 component subunit beta OS=Chaetosphaeridium globosum GN=pdhB PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.815e-23
Identity = 68/189 (35.98%), Postives = 95/189 (50.26%), Query Frame = 2
Query:  182 LYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPL 745
            L+ A+  AL   ++ DP                + T G  +++G  R+ +TP+ E    G AIG A  G R I E     ++  AF+QI N A    Y SG  F    + +R P G     G  HSQ  E++F  VPGL++V   +P   KGLL S IR+ NPV+FFE   LY L+ E + E +Y+L L
Sbjct:    6 LFEALRDALDEEMQRDPSVLVMGEDVGHYGGSYKVTKGFHEKYGDLRLLDTPIAENSFTGMAIGAAMTGLRPIVEGMNMGFLLLAFNQIANNAGMLHYTSGGNFKIP-IVIRGPGGVGRQLGAEHSQRLESYFQSVPGLQMVACSTPYNGKGLLKSAIRNDNPVIFFEHVLLYNLN-ENLIEQEYLLCL 192          
BLAST of CK934288 vs. ExPASy Swiss-Prot
Match: ODPB_PEA (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.801e-23
Identity = 64/198 (32.32%), Postives = 97/198 (48.99%), Query Frame = 2
Query:  164 SGKSLNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSV---EEVPEDDYMLPL 745
            S K + +  A+N AL + +  D + +             + T GL +++G  RV +TP+ E G  G  +G A  G + + E    ++   A D I+N AAK  Y S  Q +   +  R   G     G  HS    +++   PGLKV++P S   A+GLL + IRDP+PVVF E + LY  S     EV +  + LP+
Sbjct:   22 SAKQMTVRDALNSALDVEMSADSKVFLMGEEVGEYQGAYKVTKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQISV-PIVFRGLNGDAAGVGAQHSHCYASWYGSCPGLKVLVPHSAEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFWLPI 218          
BLAST of CK934288 vs. ExPASy Swiss-Prot
Match: ODPB_ZYMMO (Pyruvate dehydrogenase E1 component subunit beta OS=Zymomonas mobilis GN=pdhB PE=3 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 8.190e-23
Identity = 60/156 (38.46%), Postives = 82/156 (52.56%), Query Frame = 2
Query:  278 RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPL 745
            + T GL   FG  RV +TP+ E G  G  +G A  G R + E    ++   A D I+N AAK  Y SG Q  C  +  R P GA    G  H+Q+   ++  VPGL V+ P     AKGLL + IR  +PVVF E + LY  + +    DD++LP+
Sbjct:  174 KVTQGLLQEFGARRVVDTPISEYGFSGIGVGAAMEGLRPVIEFMTMNFSMQAIDHIINSAAKTHYMSGGQVRC-PIVFRGPNGAAPRVGAQHTQNFGPWYAAVPGLVVLAPYDAIDAKGLLKAAIRSDDPVVFLECELLYGKTFDVPKMDDFVLPI 328          
BLAST of CK934288 vs. ExPASy Swiss-Prot
Match: ODPB_CHLAT (Pyruvate dehydrogenase E1 component subunit beta OS=Chlorokybus atmophyticus GN=pdhB PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.190e-23
Identity = 69/189 (36.51%), Postives = 96/189 (50.79%), Query Frame = 2
Query:  182 LYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPL 745
            L+ A+ +A+   +E + R               + T GL  ++GK RV +TP+ E   VG A+G AA G   + E     +I  A+ QI N        SG  F    + +R P G     G  HSQ  E++F  VPGL++V   +P  AKGLL S IR  NP++F E   LY L   EVP++DY+LPL
Sbjct:    6 LFEALQKAIDEEMEREKRVVLIGEDIGHYGGSYKVTQGLYGKYGKHRVIDTPIAEYSFVGAAVGAAATGLIPVVEGMNMAFILLAYSQISNNMGMLCATSGGHFQVP-MVLRGPGGIGKQLGAEHSQRLESYFQSVPGLQIVTCSTPYNAKGLLKSAIRSKNPILFIEHVLLYNLK-GEVPDNDYLLPL 192          
BLAST of CK934288 vs. ExPASy Swiss-Prot
Match: ODPB_MESVI (Pyruvate dehydrogenase E1 component subunit beta OS=Mesostigma viride GN=pdhB PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.055e-22
Identity = 68/189 (35.98%), Postives = 92/189 (48.68%), Query Frame = 2
Query:  182 LYSAINQALHIAL-ETDPRAYXXXXXXXXXXXXRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPL 745
            L+ A+N A+   +   D  A             + T  L  ++G+ RV +TP+ E   VG AIG A  G   + E     +I  AF QI N        SG  ++   + +R P G     G  HSQ  E +F  VPGL++V   +P  AKGLL S IR  NP+ F E   LY L   EVP++DY+LPL
Sbjct:    6 LFEALNMAIDEEMARNDKVALLGEDIGHYGGSYKVTQNLYAKYGEHRVIDTPIAENSFVGAAIGAAMTGLVTVVEGMNMGFILLAFSQISNNMGMLSATSGGHYHIP-IVLRGPGGVGKQLGAEHSQRLECYFQSVPGLQIVACSTPYNAKGLLKSAIRSKNPIFFLEHVLLYNLKA-EVPDNDYVLPL 192          
BLAST of CK934288 vs. ExPASy Swiss-Prot
Match: ODPB_CYACA (Pyruvate dehydrogenase E1 component subunit beta OS=Cyanidium caldarium GN=pdhB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.074e-18
Identity = 57/156 (36.54%), Postives = 80/156 (51.28%), Query Frame = 2
Query:  278 RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPL 745
            + T  L  ++G  RV + P+ E    G AIG A  G R I E     ++  AF+QI N  +  +Y SG  FN   + +R P G        HSQ  E+ F  +PGL++V   +   AKGLL S I +  P++F E   LY L    VP+++Y LPL
Sbjct:   39 KVTKDLHVKYGDLRVLDAPIAENSFTGMAIGAAMTGLRPIVEGMNMGFMLLAFNQISNNLSMLQYTSGGNFNI-PVVIRGPGGIGKQLAAEHSQRLESCFQSIPGLQIVACSTAYNAKGLLKSAIIEKKPILFLEHVLLYNLK-GFVPDEEYYLPL 192          
The following BLAST results are available for this feature:
BLAST of CK934288 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODPB_MOUSE2.815e-2334.54Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_CHAGL2.815e-2335.98Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_PEA4.801e-2332.32Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_ZYMMO8.190e-2338.46Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CHLAT8.190e-2336.51Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_MESVI9.055e-2235.98Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CYACA6.074e-1836.54Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004261_A11 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IVF_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934288 ID=CK934288; Name=CK934288; organism=Citrus sinensis; type=EST; length=746bp
GGGGGAATTCAATATTTGCAAACTCCACAACCAAAAATCTTGGCGGAGAT
TTCACTATATGGCTTCTGGTTTGAGAAGATTTGTGGGTTCCCTTTCACGG
AGAAATCTTTCAACTGCTTGTGCGAACAAGCAGCTAATTCAACAACACGA
TGGGGGTGTTGGCAGTGGCAAGTCTTTGAATTTGTACTCTGCCATCAACC
AGGCTCTTCATATTGCTTTGGAAACTGATCCACGTGCTTATGTGTTTGGA
GAAGATGTGGGCTTTGGTGGAGTCTTCCGATGCACGACAGGATTAGCTGA
TCGATTTGGTAAAAGTCGGGTATTCAATACCCCTCTTTGTGAACAGGGCA
TCGTTGGGTTTGCCATTGGTCTGGCAGCTATGGGAAATCGAGCTATAGCT
GAAATTCAATTTGCAGATTATATTTTTCCAGCTTTTGATCAGATTGTCAA
TGAAGCTGCTAAGTTCAGATACAGGAGTGGAAATCAATTTAATTGTGGAG
GATTAACAGTAAGAGCCCCTTACGGAGCTGTGGGCCATGGTGGACACTAT
CACTCGCAATCTCCTGAAGCTTTCTTTTGTCACGTTCCTGGTCTCAAAGT
GGTCATCCCTCGAAGCCCACGACAAGCAAAAGGATTATTGCTGTCATGCA
TTCGTGATCCGAACCCTGTTGTCTTTTTTGAGCCAAAGTGGCTTTACCGT
TTGTCTGTAGAAGAGGTTCCTGAGGATGATTATATGTTGCCTTTAT
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