CK934313

Overview
NameCK934313
Unique NameCK934313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934313_ssr671 microsatellite CK934313_ssr671:671..682. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10230 contig Csv1_Contig10230:1140..1957. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: ACSF2_MOUSE (Acyl-CoA synthetase family member 2, mitochondrial OS=Mus musculus GN=Acsf2 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.333e-24
Identity = 60/154 (38.96%), Postives = 86/154 (55.84%), Query Frame = 3
Query:  201 GEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAE 662
            GE+ +RG C+M GY  +P  T + +  D W+ TGD+ +M   G+ +I  RSKD+II                  P V EA VV   DE  GE  CA + LK G  +  T +E+  +C+GK+ H+ +P+ +VF++  P T +GKIQKF LRE  E
Sbjct:  459 GELYIRGYCVMQGYWGEPQKTFETVGQDKWYRTGDIALMDEQGFCKIVGRSKDMIIRGGENIYPAELEDFFLKHPQVQEAQVVGVKDERMGEEICACIRLKSGETT--TAEEIKAFCKGKISHFKIPRYIVFVEGYPLTISGKIQKFKLREQME 610          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: YDAB_BACSU (Putative acyl--CoA ligase ydaB OS=Bacillus subtilis GN=ydaB PE=3 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 6.617e-24
Identity = 80/218 (36.70%), Postives = 113/218 (51.83%), Query Frame = 3
Query:    6 SHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLRARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIA 659
            +HGYG TE  GI     W  +  +  AA   K  A  GVK      V V DP +G    +    +GEIV+    +  GY  +P  T K +  +GWF TGD G +  DG++ I  R KDVII                  P + E AVV  PD  +GE P AF+ +K G + + TE+++I +C+ +L  Y +P+ V F++ELPK + GK++K VLR  A
Sbjct:  300 AHGYGSTEAWGI---STWTPDMGMDKAASAGKPVA--GVK------VKVEDPLTGEELPQ--GEIGEIVVHTPFLFKGYEDNPEATAKVL-QNGWFRTGDSGYVDEDGFIFITGRYKDVIIYGGDNVYPDQVEEVIQQIPGILETAVVGIPDPLYGEKPKAFI-VKNGGQ-RITEEDVIAFCKERLSAYKIPE-VEFVNELPKNNLGKVKKDVLRNQA 500          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: MENE_GEOSW (2-succinylbenzoate--CoA ligase OS=Geobacillus sp. (strain WCH70) GN=menE PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.617e-24
Identity = 69/217 (31.80%), Postives = 107/217 (49.31%), Query Frame = 3
Query:   15 YGLTETGGIVVSCAWKRNWNLLPAAEKAKLRARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAEN 665
            YG+TET   + + A + +   L +A K    ++  ++            K G  A+      GEIV++G  +  GYL  P  T K +   GWFYTGD+G +  DG+L + DR  D+II                   AV EA V    DE WG+ PCAFV  K G     T +++ ++C+  L  Y +PK + F+DELP+ ++ K+ +  L+++  N
Sbjct:  287 YGMTETASQIATLAPEYSLTKLGSAGKPLFPSQLRIE------------KDGQVARPYEP--GEIVVKGPNVTKGYLHRPDATAKAIRG-GWFYTGDIGYIDEDGFLYVLDRRSDLIISGGENVYPAEIEAVLLSHEAVEEAGVTGIDDETWGQVPCAFVKRKRG--YSVTVEQLKQFCQAHLAKYKIPKQIYFVDELPRNASQKLLRHQLKQLIPN 486          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: MENE_BACCN (2-succinylbenzoate--CoA ligase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=menE PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.515e-23
Identity = 63/166 (37.95%), Postives = 92/166 (55.42%), Query Frame = 3
Query:  180 KRDGSTL-----GEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAE 662
            ++DG  +     GEIV++G  +  GY K    TR+ + D GW +TGD+G +  +G+L + DR  D+II                  P V EA VV + DE WG+ P AFV +K G   + TE+EMI +C  KL  Y VPK V F+ ELP+ ++ K+ +  LR++ E
Sbjct:  319 EKDGKVMPANVEGEIVVKGPNVTRGYFKREDATRETIVD-GWLHTGDLGYVDDEGFLYVLDRRSDLIISGGENIYPAQIEEVLLSHPLVLEAGVVGKSDETWGQVPVAFV-VKAG---QVTEEEMIHFCEEKLAKYKVPKAVYFLHELPRNASKKLLRRELRQLLE 479          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: MENE_BACC1 (2-succinylbenzoate--CoA ligase OS=Bacillus cereus (strain ATCC 10987) GN=menE PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.602e-23
Identity = 71/218 (32.57%), Postives = 106/218 (48.62%), Query Frame = 3
Query:   15 YGLTETGGIVVSCAWKRNWNLLPAAEKAKLRARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENM 668
            YG+TET   +  C    ++ L       K           L +  +   K GV       T GEIV++G  +  GY      TR+ +  +GW +TGD+G +  +G+L + DR  D+II                  PAV EA VV   D+ WG+ P AFV +K G   + TE+E+I +C  KL  Y VPK   F++ELP+ ++ K+ +  LR++ E M
Sbjct:  283 YGMTETSSQI--CTLSADYMLTKVGSAGK----------PLFQCQLRIEKDGVVVP--AFTEGEIVVKGPNVTGGYFNREDATRETI-QNGWLHTGDIGYLDEEGFLYVLDRRSDLIISGGENIYPAQIEEVLLSHPAVAEAGVVGMTDDKWGQVPVAFV-VKSG---EVTEEEIIHFCEAKLAKYKVPKKACFLEELPRNASKKLLRRELRQLVEEM 481          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: 4CL2_PETCR (4-coumarate--CoA ligase 1 OS=Petroselinum crispum GN=4CL2 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.248e-22
Identity = 70/213 (32.86%), Postives = 107/213 (50.23%), Query Frame = 3
Query:   12 GYGLTETGGIVVSCAWKRNWNLLPAAEKAKLRARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLR 650
            GYG+TE G ++  C       L  A E  ++++          E+ ++DP++  S  R+    GEI +RG  IM GYL DP  TR  + ++GW +TGD+G +  D  L I DR K++I                   P +++AAVV   DE  GE P AFV    G  +  TE+E+ ++   ++  Y     V F+D +PK+ +GKI +  LR
Sbjct:  333 GYGMTEAGPVLAMC-------LAFAKEPYEIKSGACGTVVRNAEMKIVDPETNASLPRNQR--GEICIRGDQIMKGYLNDPESTRTTIDEEGWLHTGDIGFIDDDDELFIVDRLKEIIKYKGFQVAPAELEALLLTHPTISDAAVVPMIDEKAGEVPVAFVVRTNGFTT--TEEEIKQFVSKQVVFYKRIFRVFFVDAIPKSPSGKILRKDLR 534          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: 4CL1_PETCR (4-coumarate--CoA ligase 1 OS=Petroselinum crispum GN=4CL1 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.248e-22
Identity = 70/213 (32.86%), Postives = 107/213 (50.23%), Query Frame = 3
Query:   12 GYGLTETGGIVVSCAWKRNWNLLPAAEKAKLRARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLR 650
            GYG+TE G ++  C       L  A E  ++++          E+ ++DP++  S  R+    GEI +RG  IM GYL DP  TR  + ++GW +TGD+G +  D  L I DR K++I                   P +++AAVV   DE  GE P AFV    G  +  TE+E+ ++   ++  Y     V F+D +PK+ +GKI +  LR
Sbjct:  333 GYGMTEAGPVLAMC-------LAFAKEPYEIKSGACGTVVRNAEMKIVDPETNASLPRNQR--GEICIRGDQIMKGYLNDPESTRTTIDEEGWLHTGDIGFIDDDDELFIVDRLKEIIKYKGFQVAPAELEALLLTHPTISDAAVVPMIDEKAGEVPVAFVVRTNGFTT--TEEEIKQFVSKQVVFYKRIFRVFFVDAIPKSPSGKILRKDLR 534          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: MENE_BACC7 (2-succinylbenzoate--CoA ligase OS=Bacillus cereus (strain AH187) GN=menE PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.630e-22
Identity = 70/218 (32.11%), Postives = 108/218 (49.54%), Query Frame = 3
Query:   15 YGLTETGGIVVSCAWKRNWNLLPAAEKAKLRARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENM 668
            YG+TET   + + +       + +A K   + R  ++            K GV       T GEIV++G  +  GY      TR+ +  +GW +TGD+G +  +G+L + DR  D+II                  PAV EA VV   D+ WG+ P AFV +K G   + TE+E+I +C  KL  Y VPK   F++ELP+ ++ K+ +  LR++ E M
Sbjct:  283 YGMTETSSQICTLSADYMLTKVGSAGKPLFQCRLRIE------------KDGVVVP--AFTEGEIVVKGPNVTGGYFNREDATRETI-QNGWLHTGDLGYLDEEGFLYVLDRRSDLIISGGENIYPAQIEEVLLSHPAVAEAGVVGMTDDKWGQVPAAFV-VKSG---EVTEEEIIHFCEEKLAKYKVPKKACFLEELPRNASKKLLRRELRQLVEEM 481          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: MENE_BACCQ (2-succinylbenzoate--CoA ligase OS=Bacillus cereus (strain Q1) GN=menE PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.129e-22
Identity = 70/218 (32.11%), Postives = 106/218 (48.62%), Query Frame = 3
Query:   15 YGLTETGGIVVSCAWKRNWNLLPAAEKAKLRARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENM 668
            YG+TET   +  C    ++ L       K           L +  +   K GV       T GEIV++G  +  GY      TR+ +  +GW +TGD+G +  +G+L + DR  D+II                  PAV EA VV   D+ WG+ P AFV +K G   + TE+E++ +C  KL  Y VPK   F++ELP+ ++ K+ +  LR++ E M
Sbjct:  283 YGMTETSSQI--CTLSADYMLTKVGSAGK----------PLFQCQLRIEKDGVVVP--AFTEGEIVVKGPNVTGGYFNREDATRETI-QNGWLHTGDLGYLDEEGFLYVLDRRSDLIISGGENIYPAQIEEVLLSHPAVAEAGVVGMTDDKWGQVPAAFV-VKSG---EVTEEEILHFCEEKLAKYKVPKKACFLEELPRNASKKLLRRELRQLVEEM 481          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: 4CL1_TOBAC (4-coumarate--CoA ligase 1 OS=Nicotiana tabacum GN=4CL1 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.129e-22
Identity = 72/215 (33.49%), Postives = 105/215 (48.84%), Query Frame = 3
Query:   12 GYGLTETGGIVVSCAWKRNWNLLPAAEKAKLRARQGVKTTAL--TEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLR 650
            GYG+TE G ++  C          A  K     + G   T +   E+ ++DP +G S  R+    GEI +RG  IM GYL DP  T + +  +GW +TGD+G +  D  L I DR K++I                   P +++AAVV   DE  GE P AFV    GS    TE E+ ++   ++  Y   K V F++ +PK+ +GKI +  LR
Sbjct:  337 GYGMTEAGPVLAMCL---------AFAKEPFDIKSGACGTVVRNAEMKIVDPDTGCSLPRNQP--GEICIRGDQIMKGYLNDPEATTRTIDKEGWLHTGDIGFIDEDDELFIVDRLKELIKYKGFQVAPAEIEALLLNHPNISDAAVVPMKDEQAGEVPVAFVVRSNGSAI--TEDEVKDFISKQVIFYKRVKRVFFVETVPKSPSGKILRKDLR 538          
The following BLAST results are available for this feature:
BLAST of CK934313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
ACSF2_MOUSE1.333e-2438.96Acyl-CoA synthetase family member 2, mitochondrial... [more]
YDAB_BACSU6.617e-2436.70Putative acyl--CoA ligase ydaB OS=Bacillus subtili... [more]
MENE_GEOSW6.617e-2431.802-succinylbenzoate--CoA ligase OS=Geobacillus sp. ... [more]
MENE_BACCN2.515e-2337.952-succinylbenzoate--CoA ligase OS=Bacillus cereus ... [more]
MENE_BACC15.602e-2332.572-succinylbenzoate--CoA ligase OS=Bacillus cereus ... [more]
4CL2_PETCR1.248e-2232.864-coumarate--CoA ligase 1 OS=Petroselinum crispum ... [more]
4CL1_PETCR1.248e-2232.864-coumarate--CoA ligase 1 OS=Petroselinum crispum ... [more]
MENE_BACC71.630e-2232.112-succinylbenzoate--CoA ligase OS=Bacillus cereus ... [more]
MENE_BACCQ2.129e-2232.112-succinylbenzoate--CoA ligase OS=Bacillus cereus ... [more]
4CL1_TOBAC2.129e-2233.494-coumarate--CoA ligase 1 OS=Nicotiana tabacum GN=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004260_F09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIIF_F09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934313 ID=CK934313; Name=CK934313; organism=Citrus sinensis; type=EST; length=818bp
GGGGGAGTCACGGATATGGGTTGACCGAAACGGGAGGAATCGTGGTGTCG
TGTGCATGGAAAAGGAACTGGAACCTGTTGCCAGCAGCGGAGAAAGCTAA
GCTTAGGGCTAGACAAGGAGTCAAAACGACAGCGTTGACGGAAGTTGACG
TGCTGGATCCGAAGTCGGGAGTGAGTGCAAAACGTGACGGGTCAACGCTG
GGTGAGATTGTACTGAGAGGAGGATGCATAATGCTGGGTTATCTTAAAGA
TCCTATTGGGACCCGTAAGTGCATGACGGATGATGGCTGGTTCTACACCG
GAGACGTTGGGGTGATGCACAGTGATGGGTACTTAGAGATAAAGGATAGA
TCAAAGGATGTTATAATCAGCGGGGGAGAGAACCTGAGCAGCGTGGAGGT
TGAGTCAGTGCTGTATTCGAACCCGGCAGTTAACGAGGCGGCAGTGGTGG
CTCGGCCGGACGAGTTCTGGGGCGAGACGCCTTGTGCATTTGTCAGTTTG
AAGGAGGGGTCGAAAAGTAAACCAACCGAAAAAGAGATGATAGAGTATTG
CAGGGGTAAGTTGCCCCACTACATGGTGCCCAAAACTGTGGTGTTTATGG
ATGAATTGCCCAAGACTTCTACCGGTAAGATTCAAAAGTTTGTGCTCAGA
GAGATTGCTGAGAACATGGGCTCCTCCTCCTCGCCTCTCTCCAGATCATT
GACCAGTCGAATGTAGTAATATTAAACTCGAATCGATCGACGAACTGNCA
GTTAGCATTATTTGCTCCTCCAATAAAATTNNNNNTCCAATCGTAATTAA
AAAAAAAAAAAAAAAAAA
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