CK934313

Overview
NameCK934313
Unique NameCK934313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934313_ssr671 microsatellite CK934313_ssr671:671..682. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10230 contig Csv1_Contig10230:1140..1957. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: Y3568_PSEAE (Uncharacterized protein PA3568 OS=Pseudomonas aeruginosa GN=PA3568 PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.424e-11
Identity = 55/191 (28.80%), Postives = 88/191 (46.07%), Query Frame = 3
Query:  102 LRARQGVKTTALTEVDVLDPKSG-VSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTD-DGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKE--GSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAE 662
            LRA    +      V VLD +   + A R G+ +  + L  GC    +   P   +  + +  G+++TGD G +  DG++ I  R+ DVI                    AV E AV+   DE  G  P   V LK+  G  ++  ++E++   R ++      + VV +  LPKT +GKI + VLR+IA+
Sbjct:  409 LRAGSTNRAVPGYHVQVLDDEGRPLGANRQGAIVIALPLPPGCAQTLWGDHPRYLQAYLGNYPGYYHTGDGGYLDEDGFVYIMGRTDDVINVSGHRLSTGEMEERVAQHQAVAECAVIGVRDELKGHVPLGLVVLKDDAGIAAEQLQRELVALVREQIGALACFQRVVVVKRLPKTRSGKILRAVLRKIAD 599          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: ENTE_ECOLI (Enterobactin synthase component E OS=Escherichia coli (strain K12) GN=entE PE=3 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 6.424e-11
Identity = 42/152 (27.63%), Postives = 71/152 (46.71%), Query Frame = 3
Query:  198 LGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLRE 653
            +G ++ RG     GY K P         +G++ +GD+  +  +GY+ ++ R KD I                   PAV  AA+V+  DE  GE  CA++ +KE  ++    + + E     +  + +P  V  +D LP T+ GK+ K  LR+
Sbjct:  380 VGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPLRAVQVRRFLREQ---GIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQ 528          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: ENTE_ECO57 (Enterobactin synthase component E OS=Escherichia coli O157:H7 GN=entE PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.424e-11
Identity = 42/152 (27.63%), Postives = 71/152 (46.71%), Query Frame = 3
Query:  198 LGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLRE 653
            +G ++ RG     GY K P         +G++ +GD+  +  +GY+ ++ R KD I                   PAV  AA+V+  DE  GE  CA++ +KE  ++    + + E     +  + +P  V  +D LP T+ GK+ K  LR+
Sbjct:  380 VGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPLRAVQVRRFLREQ---GIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQ 528          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: ACSM2_RAT (Acyl-coenzyme A synthetase ACSM2, mitochondrial OS=Rattus norvegicus GN=Acsm2 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.424e-11
Identity = 63/219 (28.77%), Postives = 92/219 (42.01%), Query Frame = 3
Query:   15 YGLTETGGIVVSCAWKRNWNLLPAAEKAKLRARQGVKTTALT--EVDVLDPKSGV--SAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTE---KEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLR 650
            YG TETG   ++C   R   + P           G   TA+   +V V+D +  V    K     L    +R   +  GY+ +P  T+  +  D W   GD G+  ++GY     R+ D+I                   PAV E AV++ PD    E   AFV L     S   +   K + E+ +     Y  P+ V F+ +LPKT TGKI++  LR
Sbjct:  361 YGQTETG---ITCRVSRTMKVKP-----------GYLGTAIVPYDVQVIDEQGNVLPPGKEGDMALRVKPIRPIGMFSGYVDNPKKTQANIRGDFWLL-GDRGIKDTEGYFHFMGRTDDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPIRREVVKAFVVLAPEFLSHDQDQLTKVLQEHVKSVTAPYKYPRKVEFVLDLPKTITGKIERAKLR 564          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: ACS1_CANAL (Acetyl-coenzyme A synthetase 1 OS=Candida albicans GN=ACS1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.424e-11
Identity = 40/127 (31.50%), Postives = 64/127 (50.39%), Query Frame = 3
Query:  288 WFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKE----GSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLREI 656
            ++++GD      DG+  I  R  DV+                   P V E+AVV   DE  G+   A+VSLK+    G   +  +KEMI   R ++  +  PK ++ +D+LPKT +GKI + +LR++
Sbjct:  517 YYFSGDGAARDRDGFYWILGRVDDVVNVSGHRLSTAEIEAALIEHPIVGESAVVGYADELTGQAVAAYVSLKKDKAVGEDVENIKKEMILTVRKEIGPFAAPKMILLVDDLPKTRSGKIMRRILRKV 643          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: ACSA_PASMU (Acetyl-coenzyme A synthetase OS=Pasteurella multocida GN=acsA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.390e-11
Identity = 43/130 (33.08%), Postives = 62/130 (47.69%), Query Frame = 3
Query:  288 WFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLK----EGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAEN 665
            ++  GD      DGY  I  R+ DV+                   P V EAAVV +PDE  GE   AFV L     EG +++   +E+  +   ++     P+ + F D LPKT +GKI + +LR IA+N
Sbjct:  500 YYIAGDNAHRDKDGYFWILGRTDDVLNVSGHRLGTMEIESALVASPKVAEAAVVGKPDEIKGEAIVAFVVLNDFRPEGEEARQLAEELKAWVSNEIGKIARPEDIRFADNLPKTRSGKIMRRLLRSIAKN 629          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: ACSA_BDEBA (Acetyl-coenzyme A synthetase OS=Bdellovibrio bacteriovorus GN=acsA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.390e-11
Identity = 45/128 (35.16%), Postives = 63/128 (49.22%), Query Frame = 3
Query:  285 GWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEG-SKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAEN 665
            G+++TGD      DGY  I  R  DVI                     V EAAVV  P +  G+   AFV+LK G + S+   KE+I+  R ++     P  + +   LPKT +GKI + +LR+IAEN
Sbjct:  491 GYYFTGDGCRRDQDGYYWITGRVDDVINVSGHRLGTAEIESALVAHHKVAEAAVVGYPHDIKGQGIYAFVTLKSGETASEELRKELIQTVRKEIGPIATPDLIQWAPRLPKTRSGKIMRRILRKIAEN 618          
The following BLAST results are available for this feature:
BLAST of CK934313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
Y3568_PSEAE6.424e-1128.80Uncharacterized protein PA3568 OS=Pseudomonas aeru... [more]
ENTE_ECOLI6.424e-1127.63Enterobactin synthase component E OS=Escherichia c... [more]
ENTE_ECO576.424e-1127.63Enterobactin synthase component E OS=Escherichia c... [more]
ACSM2_RAT6.424e-1128.77Acyl-coenzyme A synthetase ACSM2, mitochondrial OS... [more]
ACS1_CANAL6.424e-1131.50Acetyl-coenzyme A synthetase 1 OS=Candida albicans... [more]
ACSA_PASMU8.390e-1133.08Acetyl-coenzyme A synthetase OS=Pasteurella multoc... [more]
ACSA_BDEBA8.390e-1135.16Acetyl-coenzyme A synthetase OS=Bdellovibrio bacte... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004260_F09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIIF_F09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934313 ID=CK934313; Name=CK934313; organism=Citrus sinensis; type=EST; length=818bp
GGGGGAGTCACGGATATGGGTTGACCGAAACGGGAGGAATCGTGGTGTCG
TGTGCATGGAAAAGGAACTGGAACCTGTTGCCAGCAGCGGAGAAAGCTAA
GCTTAGGGCTAGACAAGGAGTCAAAACGACAGCGTTGACGGAAGTTGACG
TGCTGGATCCGAAGTCGGGAGTGAGTGCAAAACGTGACGGGTCAACGCTG
GGTGAGATTGTACTGAGAGGAGGATGCATAATGCTGGGTTATCTTAAAGA
TCCTATTGGGACCCGTAAGTGCATGACGGATGATGGCTGGTTCTACACCG
GAGACGTTGGGGTGATGCACAGTGATGGGTACTTAGAGATAAAGGATAGA
TCAAAGGATGTTATAATCAGCGGGGGAGAGAACCTGAGCAGCGTGGAGGT
TGAGTCAGTGCTGTATTCGAACCCGGCAGTTAACGAGGCGGCAGTGGTGG
CTCGGCCGGACGAGTTCTGGGGCGAGACGCCTTGTGCATTTGTCAGTTTG
AAGGAGGGGTCGAAAAGTAAACCAACCGAAAAAGAGATGATAGAGTATTG
CAGGGGTAAGTTGCCCCACTACATGGTGCCCAAAACTGTGGTGTTTATGG
ATGAATTGCCCAAGACTTCTACCGGTAAGATTCAAAAGTTTGTGCTCAGA
GAGATTGCTGAGAACATGGGCTCCTCCTCCTCGCCTCTCTCCAGATCATT
GACCAGTCGAATGTAGTAATATTAAACTCGAATCGATCGACGAACTGNCA
GTTAGCATTATTTGCTCCTCCAATAAAATTNNNNNTCCAATCGTAATTAA
AAAAAAAAAAAAAAAAAA
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