CK934313

Overview
NameCK934313
Unique NameCK934313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934313_ssr671 microsatellite CK934313_ssr671:671..682. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10230 contig Csv1_Contig10230:1140..1957. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: 4CL4_ORYSJ (Probable 4-coumarate--CoA ligase 4 OS=Oryza sativa subsp. japonica GN=4CL4 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.631e-22
Identity = 69/213 (32.39%), Postives = 104/213 (48.83%), Query Frame = 3
Query:   12 GYGLTETGGIVVSCAWKRNWNLLPAAEKAKLRARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLR 650
            GYG+TE G ++  C       L  A E  ++++          E+ ++DP +G +  R+ S  GEI +RG  IM GYL DP  T+  +   GW +TGD+G +  D  + I DR K++I                   P + +AAVV   DE  GE P AF+   EGS    +E E+ ++   ++  Y     V F D +PK+ +GKI +  LR
Sbjct:  341 GYGMTEAGPVLAMC-------LAFAKEPFEVKSGSCGTVVRNAELKIVDPDTGATLGRNQS--GEICIRGEQIMKGYLNDPESTKNTIDKGGWLHTGDIGYVDDDDEIFIVDRLKEIIKYKGFQVPPAELEALLITHPDIKDAAVVPMIDEIAGEVPVAFIVRIEGSAI--SENEIKQFVAKEVVFYKRLNKVFFADSIPKSPSGKILRKDLR 542          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: 4CL2_SOLTU (4-coumarate--CoA ligase 2 OS=Solanum tuberosum GN=4CL2 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.742e-22
Identity = 72/215 (33.49%), Postives = 105/215 (48.84%), Query Frame = 3
Query:   12 GYGLTETGGIVVSCAWKRNWNLLPAAEKAKLRARQGVKTTAL--TEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLR 650
            GYG+TE G ++  C          A  K     + G   T +   E+ ++DP +G S  R+    GEI +RG  IM GYL DP  T + +  +GW +TGD+G +  D  L I DR K++I                   P +++AAVV   DE  GE P AFV    GS    TE E+ ++   ++  Y   K V F++ +PK+ +GKI +  LR
Sbjct:  335 GYGMTEAGPVLAMCL---------AFAKEPFDIKSGACGTVVRNAEMKIVDPDTGCSLPRNQP--GEICIRGDQIMKGYLNDPEATARTIEKEGWLHTGDIGFIDDDDELFIVDRLKELIKYKGFQVAPAELEALLINHPDISDAAVVPMIDEQAGEVPVAFVVRSNGSTI--TEDEVKDFISKQVIFYKRIKRVFFVETVPKSPSGKILRKDLR 536          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: 4CL1_SOLTU (4-coumarate--CoA ligase 1 OS=Solanum tuberosum GN=4CL1 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.742e-22
Identity = 72/215 (33.49%), Postives = 105/215 (48.84%), Query Frame = 3
Query:   12 GYGLTETGGIVVSCAWKRNWNLLPAAEKAKLRARQGVKTTAL--TEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLR 650
            GYG+TE G ++  C          A  K     + G   T +   E+ ++DP +G S  R+    GEI +RG  IM GYL DP  T + +  +GW +TGD+G +  D  L I DR K++I                   P +++AAVV   DE  GE P AFV    GS    TE E+ ++   ++  Y   K V F++ +PK+ +GKI +  LR
Sbjct:  335 GYGMTEAGPVLAMCL---------AFAKEPFDIKSGACGTVVRNAEMKIVDPDTGCSLPRNQP--GEICIRGDQIMKGYLNDPEATARTIEKEGWLHTGDIGFIDDDDELFIVDRLKELIKYKGFQVAPAELEALLINHPDISDAAVVPMIDEQAGEVPVAFVVRSNGSTI--TEDEVKDFISKQVIFYKRIKRVFFVETVPKSPSGKILRKDLR 536          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: 4CL5_ORYSJ (Probable 4-coumarate--CoA ligase 5 OS=Oryza sativa subsp. japonica GN=4CL5 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.194e-22
Identity = 71/215 (33.02%), Postives = 105/215 (48.84%), Query Frame = 3
Query:   12 GYGLTETGGIVVSCAWKRNWNLLPAAEKAKLRARQGVKTTAL--TEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLR 650
            GYG+TE G ++  C          A  K     + G   T +   E+ ++DP +G+S  R+    GEI +RG  IM GYL +P  T K +  DGW +TGD+G +  D  + I DR K++I                    AV +AAVV   D+  GE P AFV  ++GS    T+ E+ +Y   ++  Y     + F+D +PK  +GKI +  LR
Sbjct:  328 GYGMTEAGPVLSMCM---------AFAKEPTPVKSGACGTVVRNAELKIVDPDTGLSLPRNQP--GEICIRGKQIMKGYLNNPEATEKTIDKDGWLHTGDIGFVDDDDEIFIVDRLKELIKYKGFQVAPAELEAMLIAHAAVADAAVVPMKDDSCGEIPVAFVVARDGSGI--TDDEIKQYVAKQVVFYKRLHKIFFVDAIPKAPSGKILRKDLR 529          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: 4CL1_SOYBN (4-coumarate--CoA ligase 1 (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.194e-22
Identity = 71/215 (33.02%), Postives = 106/215 (49.30%), Query Frame = 3
Query:   12 GYGLTETGGIVVSCAWKRNWNLLPAAEKAKLRARQGVKTTAL--TEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLR 650
            GYG+TE G ++             A  K  +  + G   T +   E+ ++DP++G S  R+ S  GEI +RG  IM GYL D   T + +  DGW +TGD+G +  D  L I DR K++I                   P +++AAVV   DE  GE P AFV +  G  +  TE E+ ++   ++  Y     V F+D +PK+ +GKI +  LR
Sbjct:   82 GYGMTEAGPVLTMSL---------AFAKEPIDVKPGACGTVVRNAEMKIVDPETGHSLPRNQS--GEICIRGDQIMKGYLNDGEATERTIDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLLTHPKISDAAVVPMKDEAAGEVPVAFVVISNG-YTDTTEDEIKQFISKQVVFYKRINRVFFIDAIPKSPSGKILRKDLR 284          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: MENE_BACCR (2-succinylbenzoate--CoA ligase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=menE PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.089e-22
Identity = 57/156 (36.54%), Postives = 87/156 (55.77%), Query Frame = 3
Query:  201 GEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENM 668
            GEIV++G  +  GY      TR+ +  +GW +TGD+G +  +G+L + DR  D+II                  PAV EA VV   D+ WG+ P AFV +K G+    TE+E++ +C  KL  Y VPK   F++ELP+ ++ K+ +  LR++ E M
Sbjct:  332 GEIVVKGPNVTGGYFNREDATRETI-QNGWLHTGDLGYLDEEGFLYVLDRRSDLIISGGENIYPAQIEEVLLSHPAVAEAGVVGMSDDKWGQVPAAFV-VKSGAV---TEEEILHFCEEKLAKYKVPKKACFLEELPRNASKKLLRRELRQLVEEM 482          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: FADK_ECOLI (Short-chain-fatty-acid--CoA ligase OS=Escherichia coli (strain K12) GN=fadK PE=1 SV=3)

HSP 1 Score: 103.99 bits (258), Expect = 1.056e-21
Identity = 52/151 (34.44%), Postives = 85/151 (56.29%), Query Frame = 3
Query:  201 GEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLRE 653
            GE   RG  + +GY  +P  T + + ++GW+Y+GD+  M   GY++I  R KD+I+                  P +++A VVA  DE  GE  CA+V LK    S   E+ +  + R ++  Y  P+ +V +++LP+T++GKIQKF+LR+
Sbjct:  383 GEEASRGPNVFMGYFDEPELTARALDEEGWYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMSDERLGERSCAYVVLKAPHHSLSLEEVVAFFSRKRVAKYKYPEHIVVIEKLPRTTSGKIQKFLLRK 533          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: 4CL_VANPL (4-coumarate--CoA ligase OS=Vanilla planifolia GN=4CL PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.056e-21
Identity = 70/215 (32.56%), Postives = 103/215 (47.91%), Query Frame = 3
Query:   12 GYGLTETGGIVVSCAWKRNWNLLPAAEKAKLRARQGVKTTAL--TEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLR 650
            GYG+TE G ++  C          A  K     + G   T +   E+ ++DP++G S  R+    GEI +RG  IM GYL DP  T + +  +GW +TGD+G +  D  L I DR K++I                   P +++AAVV   DE  GE P AFV    G     TE E+ ++   ++  Y     V F++ +PK  +GKI +  LR
Sbjct:  341 GYGMTEAGPVLAMCL---------AFAKEPFDIKSGACGTVVRNAEMKIVDPETGSSLPRNHP--GEICIRGDQIMKGYLNDPEATARTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLLTHPCISDAAVVPMKDEAAGEVPVAFVVKSNGHNI--TEDEIKQFISKQVIFYKRINRVFFVEAIPKAPSGKILRKDLR 542          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: MENE_BACWK (2-succinylbenzoate--CoA ligase OS=Bacillus weihenstephanensis (strain KBAB4) GN=menE PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.380e-21
Identity = 58/156 (37.18%), Postives = 85/156 (54.49%), Query Frame = 3
Query:  201 GEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENM 668
            GEIV++G  +  GY      T + + + GW +TGD+G +  +G+L + DR  D+II                  PAV EA VV   DE WG+ P AFV +K G     TE+E+I +C  KL  Y VPK   F++ELP+ ++ K+ +  LR++ E M
Sbjct:  331 GEIVVKGPNVTGGYFNREDATHEAIRN-GWLHTGDLGYLDEEGFLYVLDRRSDLIISGGENIYPAQIEEVLLSHPAVVEAGVVGMADESWGQVPAAFV-VKSGDV---TEEEIIRFCEEKLAKYKVPKKACFLEELPRNASKKLLRRELRKLVEEM 481          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: MENE_GEOKA (2-succinylbenzoate--CoA ligase OS=Geobacillus kaustophilus GN=menE PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.802e-21
Identity = 69/214 (32.24%), Postives = 104/214 (48.60%), Query Frame = 3
Query:   15 YGLTETGGIVVSCAWKRNWNLLPAAEKAKLRARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLREI 656
            YG+TET   + + A + +   L +A K    A          E+ +L  K G  A    +  GEIV++G  +  GY + P  T + +   GWF+TGD+G +  DG+L + DR  D+II                  P V EA V    +E WG+ P AFV LK G  + P E  +  +CR +L  Y VP  + F+DELP+ +  K+ +  L+ +
Sbjct:  286 YGMTETASQIATLAPEYSLTKLGSAGKPLFPA----------ELCIL--KDGKPAAPHEA--GEIVVKGPNVTKGYWQRPEATAQAIRG-GWFFTGDIGYLDEDGFLYVLDRRSDLIISGGENVYPAEVEAVLLSHPDVEEAGVTGVENETWGQVPYAFVRLKRG--ASPDEAALRAFCRERLAKYKVPARIYFVDELPRNAAQKLLRRELKRL 482          
The following BLAST results are available for this feature:
BLAST of CK934313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
4CL4_ORYSJ3.631e-2232.39Probable 4-coumarate--CoA ligase 4 OS=Oryza sativa... [more]
4CL2_SOLTU4.742e-2233.494-coumarate--CoA ligase 2 OS=Solanum tuberosum GN=... [more]
4CL1_SOLTU4.742e-2233.494-coumarate--CoA ligase 1 OS=Solanum tuberosum GN=... [more]
4CL5_ORYSJ6.194e-2233.02Probable 4-coumarate--CoA ligase 5 OS=Oryza sativa... [more]
4CL1_SOYBN6.194e-2233.024-coumarate--CoA ligase 1 (Fragment) OS=Glycine ma... [more]
MENE_BACCR8.089e-2236.542-succinylbenzoate--CoA ligase OS=Bacillus cereus ... [more]
FADK_ECOLI1.056e-2134.44Short-chain-fatty-acid--CoA ligase OS=Escherichia ... [more]
4CL_VANPL1.056e-2132.564-coumarate--CoA ligase OS=Vanilla planifolia GN=4... [more]
MENE_BACWK1.380e-2137.182-succinylbenzoate--CoA ligase OS=Bacillus weihens... [more]
MENE_GEOKA1.802e-2132.242-succinylbenzoate--CoA ligase OS=Geobacillus kaus... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004260_F09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIIF_F09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934313 ID=CK934313; Name=CK934313; organism=Citrus sinensis; type=EST; length=818bp
GGGGGAGTCACGGATATGGGTTGACCGAAACGGGAGGAATCGTGGTGTCG
TGTGCATGGAAAAGGAACTGGAACCTGTTGCCAGCAGCGGAGAAAGCTAA
GCTTAGGGCTAGACAAGGAGTCAAAACGACAGCGTTGACGGAAGTTGACG
TGCTGGATCCGAAGTCGGGAGTGAGTGCAAAACGTGACGGGTCAACGCTG
GGTGAGATTGTACTGAGAGGAGGATGCATAATGCTGGGTTATCTTAAAGA
TCCTATTGGGACCCGTAAGTGCATGACGGATGATGGCTGGTTCTACACCG
GAGACGTTGGGGTGATGCACAGTGATGGGTACTTAGAGATAAAGGATAGA
TCAAAGGATGTTATAATCAGCGGGGGAGAGAACCTGAGCAGCGTGGAGGT
TGAGTCAGTGCTGTATTCGAACCCGGCAGTTAACGAGGCGGCAGTGGTGG
CTCGGCCGGACGAGTTCTGGGGCGAGACGCCTTGTGCATTTGTCAGTTTG
AAGGAGGGGTCGAAAAGTAAACCAACCGAAAAAGAGATGATAGAGTATTG
CAGGGGTAAGTTGCCCCACTACATGGTGCCCAAAACTGTGGTGTTTATGG
ATGAATTGCCCAAGACTTCTACCGGTAAGATTCAAAAGTTTGTGCTCAGA
GAGATTGCTGAGAACATGGGCTCCTCCTCCTCGCCTCTCTCCAGATCATT
GACCAGTCGAATGTAGTAATATTAAACTCGAATCGATCGACGAACTGNCA
GTTAGCATTATTTGCTCCTCCAATAAAATTNNNNNTCCAATCGTAATTAA
AAAAAAAAAAAAAAAAAA
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