CK934313

Overview
NameCK934313
Unique NameCK934313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934313_ssr671 microsatellite CK934313_ssr671:671..682. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10230 contig Csv1_Contig10230:1140..1957. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: MENE_LISMO (2-succinylbenzoate--CoA ligase OS=Listeria monocytogenes GN=menE PE=3 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 3.074e-21
Identity = 67/213 (31.46%), Postives = 102/213 (47.89%), Query Frame = 3
Query:   15 YGLTETGGIVVSCAWKRNWNLLPAAEKAKLRARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLRE 653
            +G+TET   +V+   K   N + ++ KA   A          EV + D              GEI+L+G  I  GYL +   T     D GWF TGD+G +  +G+L + +R  D+II                   AV E AV+ +PD+ WG  P AF+  +E       E E+   C+  L  Y +PK ++ +++LPKT++GKIQ+  L+E
Sbjct:  279 FGMTETASQIVTLPPKDALNKIGSSGKALFPA----------EVKIADD-------------GEILLKGPSITPGYLHNKKATEASFVD-GWFKTGDIGYLDEEGFLFVVERRSDLIISGGENIYPTEIEHVIGEYVAVKEVAVIGQPDDKWGSVPVAFIVAEETFD----EDELQLICQTNLASYKIPKQIIIVEKLPKTASGKIQRNKLKE 463          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: MENE_BACHK (2-succinylbenzoate--CoA ligase OS=Bacillus thuringiensis subsp. konkukian GN=menE PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.074e-21
Identity = 56/156 (35.90%), Postives = 86/156 (55.13%), Query Frame = 3
Query:  201 GEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENM 668
            GEIV++G  +  GY      TR+ +  +GW +TGD+G +  +G+L + DR  D+II                  P V EA VV   D+ WG+ P AFV +K G   + TE+E++ +C  KL  Y VPK   F++ELP+ ++ K+ +  LR++ E M
Sbjct:  332 GEIVVKGPNVTGGYFNREDATRETI-QNGWLHTGDLGYLDEEGFLYVLDRRSDLIISGGENIYPAQIEEVLLSHPMVAEAGVVGMTDDKWGQVPAAFV-VKSG---EVTEEEILHFCEEKLAKYKVPKKACFLEELPRNASKKLLRRELRQLVEEM 482          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: MENE_BACCZ (2-succinylbenzoate--CoA ligase OS=Bacillus cereus (strain ZK / E33L) GN=menE PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.074e-21
Identity = 68/218 (31.19%), Postives = 105/218 (48.17%), Query Frame = 3
Query:   15 YGLTETGGIVVSCAWKRNWNLLPAAEKAKLRARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENM 668
            YG+TET   +  C    ++ L+      K           L +  +   K GV         GEIV++G  +  GY      TR+ +  +GW +TGD+G +  +G+L + DR  D+II                  P V EA VV   D+ WG+ P AFV +K G   + TE+E++ +C  KL  Y VPK   F++ELP+ ++ K+ +  LR++ E M
Sbjct:  284 YGMTETSSQI--CTLSADYMLMKVGSAGK----------PLFQCQLRIEKDGVVVPPFAE--GEIVVKGPNVTGGYFNREDATRETI-QNGWLHTGDLGYLDEEGFLYVLDRRSDLIISGGENIYPAQIEEVLLSHPMVAEAGVVGMTDDKWGQVPAAFV-VKSG---EITEEEILHFCEEKLAKYKVPKKAWFLEELPRNASKKLLRRELRQLVEEM 482          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: 4CL2_ARATH (4-coumarate--CoA ligase 2 OS=Arabidopsis thaliana GN=4CL2 PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 3.074e-21
Identity = 71/213 (33.33%), Postives = 101/213 (47.42%), Query Frame = 3
Query:   12 GYGLTETGGIVVSCAWKRNWNLLPAAEKAKLRARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLR 650
            GYG+TE G ++         +L  A E   +++          E+ +LDP +G S  R+    GEI +RG  IM GYL DP+ T   +  DGW +TGDVG +  D  L I DR K++I                   P +N+ AVVA  +E  GE P AFV       S  +E E+ ++   ++  Y     V F D +PK  +GKI +  LR
Sbjct:  346 GYGMTEAGPVLAM-------SLGFAKEPFPVKSGACGTVVRNAEMKILDPDTGDSLPRNKP--GEICIRGNQIMKGYLNDPLATASTIDKDGWLHTGDVGFIDDDDELFIVDRLKELIKYKGFQVAPAELESLLIGHPEINDVAVVAMKEEDAGEVPVAFV--VRSKDSNISEDEIKQFVSKQVVFYKRINKVFFTDSIPKAPSGKILRKDLR 547          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: MENE_BACC0 (2-succinylbenzoate--CoA ligase OS=Bacillus cereus (strain AH820) GN=menE PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.015e-21
Identity = 56/156 (35.90%), Postives = 86/156 (55.13%), Query Frame = 3
Query:  201 GEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENM 668
            GEIV++G  +  GY      TR+ +  +GW +TGD+G +  +G+L + DR  D+II                  P V EA VV   D+ WG+ P AFV +K G   + TE+E++ +C  KL  Y VPK   F++ELP+ ++ K+ +  LR++ E M
Sbjct:  332 GEIVVKGPNVTGGYFNREDATRETI-QNGWLHTGDLGYLDEEGFLYVLDRRSDLIISGGENIYPAQIEEVLLSHPMVAEAGVVGMTDDKWGQVPAAFV-VKSG---EITEEEILHFCEEKLAKYKVPKKACFLEELPRNASKKLLRRELRQLVEEM 482          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: MENE_BACAN (2-succinylbenzoate--CoA ligase OS=Bacillus anthracis GN=menE PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.015e-21
Identity = 56/156 (35.90%), Postives = 86/156 (55.13%), Query Frame = 3
Query:  201 GEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENM 668
            GEIV++G  +  GY      TR+ +  +GW +TGD+G +  +G+L + DR  D+II                  P V EA VV   D+ WG+ P AFV +K G   + TE+E++ +C  KL  Y VPK   F++ELP+ ++ K+ +  LR++ E M
Sbjct:  331 GEIVVKGPNVTGGYFNREDATRETI-QNGWLHTGDLGYLDEEGFLYVLDRRSDLIISGGENIYPAQIEEVLLSHPMVAEAGVVGMTDDKWGQVPAAFV-VKSG---EITEEEILHFCEEKLAKYKVPKKACFLEELPRNASKKLLRRELRQLVEEM 481          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: MENE_BACAH (2-succinylbenzoate--CoA ligase OS=Bacillus thuringiensis (strain Al Hakam) GN=menE PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.015e-21
Identity = 56/156 (35.90%), Postives = 86/156 (55.13%), Query Frame = 3
Query:  201 GEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENM 668
            GEIV++G  +  GY      TR+ +  +GW +TGD+G +  +G+L + DR  D+II                  P V EA VV   D+ WG+ P AFV +K G   + TE+E++ +C  KL  Y VPK   F++ELP+ ++ K+ +  LR++ E M
Sbjct:  332 GEIVVKGPNVTGGYFNREDATRETI-QNGWLHTGDLGYLDEEGFLYVLDRRSDLIISGGENIYPAQIEEVLLSHPMVAEAGVVGMTDDKWGQVPAAFV-VKSG---EITEEEILHFCEEKLAKYKVPKKACFLEELPRNASKKLLRRELRQLVEEM 482          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: MENE_BACAC (2-succinylbenzoate--CoA ligase OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=menE PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.015e-21
Identity = 56/156 (35.90%), Postives = 86/156 (55.13%), Query Frame = 3
Query:  201 GEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENM 668
            GEIV++G  +  GY      TR+ +  +GW +TGD+G +  +G+L + DR  D+II                  P V EA VV   D+ WG+ P AFV +K G   + TE+E++ +C  KL  Y VPK   F++ELP+ ++ K+ +  LR++ E M
Sbjct:  332 GEIVVKGPNVTGGYFNREDATRETI-QNGWLHTGDLGYLDEEGFLYVLDRRSDLIISGGENIYPAQIEEVLLSHPMVAEAGVVGMTDDKWGQVPAAFV-VKSG---EITEEEILHFCEEKLAKYKVPKKACFLEELPRNASKKLLRRELRQLVEEM 482          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: MENE_BACAA (2-succinylbenzoate--CoA ligase OS=Bacillus anthracis (strain A0248) GN=menE PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.015e-21
Identity = 56/156 (35.90%), Postives = 86/156 (55.13%), Query Frame = 3
Query:  201 GEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENM 668
            GEIV++G  +  GY      TR+ +  +GW +TGD+G +  +G+L + DR  D+II                  P V EA VV   D+ WG+ P AFV +K G   + TE+E++ +C  KL  Y VPK   F++ELP+ ++ K+ +  LR++ E M
Sbjct:  332 GEIVVKGPNVTGGYFNREDATRETI-QNGWLHTGDLGYLDEEGFLYVLDRRSDLIISGGENIYPAQIEEVLLSHPMVAEAGVVGMTDDKWGQVPAAFV-VKSG---EITEEEILHFCEEKLAKYKVPKKACFLEELPRNASKKLLRRELRQLVEEM 482          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: LCFA_BACSU (Long-chain-fatty-acid--CoA ligase OS=Bacillus subtilis GN=lcfA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.243e-21
Identity = 60/156 (38.46%), Postives = 83/156 (53.21%), Query Frame = 3
Query:  201 GEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKI-QKFVLREIAEN 665
            GEI+++G  +M GY   P  T   + D GW +TGD+G M  +G+  I DR KD+II                   A+ E  V   PD + GET  AFV LK+G+K+    +E+  + R +L  Y VPK   F  ELPKT+ GKI ++ +L E  EN
Sbjct:  404 GEIIVKGPQVMKGYWNKPEETAAVLRD-GWLFTGDMGYMDEEGFFYIADRKKDIIIAGGYNIYPREVEEALYEHEAIQEIVVAGVPDSYRGETVKAFVVLKKGAKA--DTEELDAFARSRLAPYKVPKAYEFRKELPKTAVGKILRRRLLEEETEN 556          
The following BLAST results are available for this feature:
BLAST of CK934313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
MENE_LISMO3.074e-2131.462-succinylbenzoate--CoA ligase OS=Listeria monocyt... [more]
MENE_BACHK3.074e-2135.902-succinylbenzoate--CoA ligase OS=Bacillus thuring... [more]
MENE_BACCZ3.074e-2131.192-succinylbenzoate--CoA ligase OS=Bacillus cereus ... [more]
4CL2_ARATH3.074e-2133.334-coumarate--CoA ligase 2 OS=Arabidopsis thaliana ... [more]
MENE_BACC04.015e-2135.902-succinylbenzoate--CoA ligase OS=Bacillus cereus ... [more]
MENE_BACAN4.015e-2135.902-succinylbenzoate--CoA ligase OS=Bacillus anthrac... [more]
MENE_BACAH4.015e-2135.902-succinylbenzoate--CoA ligase OS=Bacillus thuring... [more]
MENE_BACAC4.015e-2135.902-succinylbenzoate--CoA ligase OS=Bacillus anthrac... [more]
MENE_BACAA4.015e-2135.902-succinylbenzoate--CoA ligase OS=Bacillus anthrac... [more]
LCFA_BACSU5.243e-2138.46Long-chain-fatty-acid--CoA ligase OS=Bacillus subt... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004260_F09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIIF_F09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934313 ID=CK934313; Name=CK934313; organism=Citrus sinensis; type=EST; length=818bp
GGGGGAGTCACGGATATGGGTTGACCGAAACGGGAGGAATCGTGGTGTCG
TGTGCATGGAAAAGGAACTGGAACCTGTTGCCAGCAGCGGAGAAAGCTAA
GCTTAGGGCTAGACAAGGAGTCAAAACGACAGCGTTGACGGAAGTTGACG
TGCTGGATCCGAAGTCGGGAGTGAGTGCAAAACGTGACGGGTCAACGCTG
GGTGAGATTGTACTGAGAGGAGGATGCATAATGCTGGGTTATCTTAAAGA
TCCTATTGGGACCCGTAAGTGCATGACGGATGATGGCTGGTTCTACACCG
GAGACGTTGGGGTGATGCACAGTGATGGGTACTTAGAGATAAAGGATAGA
TCAAAGGATGTTATAATCAGCGGGGGAGAGAACCTGAGCAGCGTGGAGGT
TGAGTCAGTGCTGTATTCGAACCCGGCAGTTAACGAGGCGGCAGTGGTGG
CTCGGCCGGACGAGTTCTGGGGCGAGACGCCTTGTGCATTTGTCAGTTTG
AAGGAGGGGTCGAAAAGTAAACCAACCGAAAAAGAGATGATAGAGTATTG
CAGGGGTAAGTTGCCCCACTACATGGTGCCCAAAACTGTGGTGTTTATGG
ATGAATTGCCCAAGACTTCTACCGGTAAGATTCAAAAGTTTGTGCTCAGA
GAGATTGCTGAGAACATGGGCTCCTCCTCCTCGCCTCTCTCCAGATCATT
GACCAGTCGAATGTAGTAATATTAAACTCGAATCGATCGACGAACTGNCA
GTTAGCATTATTTGCTCCTCCAATAAAATTNNNNNTCCAATCGTAATTAA
AAAAAAAAAAAAAAAAAA
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