CK934313

Overview
NameCK934313
Unique NameCK934313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934313_ssr671 microsatellite CK934313_ssr671:671..682. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10230 contig Csv1_Contig10230:1140..1957. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: 4CL1_ORYSJ (Probable 4-coumarate--CoA ligase 1 OS=Oryza sativa subsp. japonica GN=4CL1 PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 5.243e-21
Identity = 68/222 (30.63%), Postives = 114/222 (51.35%), Query Frame = 3
Query:   12 GYGLTETGGIVVSCAWKRNWNLLPAAEKAKLRARQGVKTTAL--TEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDE-FWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENM 668
            GYG+TE G ++  C          A  K   + + G   T +   E+ ++DP +G S  R+    GEI +RG  IM GYL +P  T+  +  +GW +TGD+G +  D  + I DR K++I                   P++ +AAVV +  E   GE P AFV+  EGS+   +E ++ ++   ++ +Y   + V F+D++PK  +GKI +  LR+  +++
Sbjct:  352 GYGMTEAGPVLSMCL---------AFAKEPFKVKSGACGTVVRNAELKIIDPDTGKSLGRN--LPGEICIRGQQIMKGYLNNPEATKNTIDAEGWLHTGDIGYVDDDDEIFIVDRLKEIIKYRGFQVAPAELEALLITHPSIADAAVVGKQIEPEIGEIPVAFVAKTEGSEL--SEDDVKQFVAKEVIYYKKIREVFFVDKIPKAPSGKILRKELRKQLQHL 560          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: 4CL2_ORYSJ (Probable 4-coumarate--CoA ligase 2 OS=Oryza sativa subsp. japonica GN=4CL2 PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 6.848e-21
Identity = 71/215 (33.02%), Postives = 106/215 (49.30%), Query Frame = 3
Query:   12 GYGLTETGGIVVSCAWKRNWNLLPAAEKAKLRARQGVKTTAL--TEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLR 650
            GYG+TE G ++  C         PA  K    A+ G   T +   E+ V+DP +G S  R+    GEI +RG  IM GYL DP  T   +  +GW +TGD+G +  D  + I DR K++I                   P++ +AAVV + D+  GE P AFV     + S  TE+ + E+   ++  Y     V F+  +PK+++GKI +  LR
Sbjct:  362 GYGMTEAGPVLSMC---------PAFAKEPTPAKSGSCGTVVRNAELKVVDPDTGFSLGRN--LPGEICIRGPQIMKGYLNDPEATAATIDVEGWLHTGDIGYVDDDDEVFIVDRVKELIKFKGFQVPPAELESLLIAHPSIADAAVVPQKDDVAGEVPVAFV--VRAADSDITEESIKEFISKQVVFYKRLHKVHFIHAIPKSASGKILRRELR 563          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: MENE_LISIN (2-succinylbenzoate--CoA ligase OS=Listeria innocua GN=menE PE=3 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 8.944e-21
Identity = 68/217 (31.34%), Postives = 101/217 (46.54%), Query Frame = 3
Query:   15 YGLTETGGIVVSCAWKRNWNLLPAAEKAKLRARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAEN 665
            +G+TET   +V+   K   N + ++ KA   A          EV + D              GEI+L+G  I  GYL +   T K   D GWF TGD+G +  +G+L + +R  D+II                   AV E AVV + D  WG  P AF+ + EG      E  + + C+  L  + +PK +  ++ LPKT++GKIQ+  L+E   N
Sbjct:  279 FGMTETASQIVTLPPKDALNKIGSSGKALFPA----------EVKIADD-------------GEILLKGPSITPGYLHNEKATAKAFID-GWFKTGDIGYLDEEGFLFVLERRSDLIISGGENIYPTEIEHVIGAYEAVEEVAVVGKSDAKWGSVPVAFIVVNEGF----DEGVLKDICQTNLASFKIPKQITIVEHLPKTASGKIQRNKLKERHSN 467          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: LCFA_ECO57 (Long-chain-fatty-acid--CoA ligase OS=Escherichia coli O157:H7 GN=fadD PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.526e-20
Identity = 59/153 (38.56%), Postives = 82/153 (53.59%), Query Frame = 3
Query:  201 GEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIA 659
            GE+ +RG  +MLGY + P  T + + + GW +TGD+ VM  +G+L I DR KD+I+                  P V E A V  P    GE    FV  K+ S    TE+ ++ +CR +L  Y VPK V F DELPK++ GKI +  LR+ A
Sbjct:  405 GELCVRGPQVMLGYWQRPDATDEIIKN-GWLHTGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMQHPGVQEVAAVGVPSGSSGEAVKIFVVKKDPSL---TEESLVTFCRRQLTGYKVPKLVEFRDELPKSNVGKILRRELRDEA 553          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: 4CLL4_ORYSJ (4-coumarate--CoA ligase-like 4 OS=Oryza sativa subsp. japonica GN=4CLL4 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.526e-20
Identity = 66/216 (30.56%), Postives = 111/216 (51.39%), Query Frame = 3
Query:   12 GYGLTETGGIVVSCAWKRNWNLLPAAEKAKLRARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIA 659
            GYGLTE+  I  S           +AE+++     G+ +   TE  ++DP SG +   + +  GE+ +RG  +M GY K+   T+  +T DGW  TGD+  +  DGYL + DR K++I                   P V + AV+  PD   G+ P A++  K+GS    +E+E++E+   ++  Y   + V F+ ++PK ++GKI +  L ++A
Sbjct:  347 GYGLTESTAIGAST---------DSAEESRRYGTAGLLSPN-TEAKIVDPDSGEALPVNRT--GELWIRGPYVMKGYFKNAEATQSTLTPDGWLKTGDLCYIDEDGYLFVVDRLKELIKYKGYQVPPAELEALLLTHPEVTDVAVIPFPDREVGQFPMAYIVRKKGSNL--SEREVMEFVAKQVAPYKKVRKVAFVTDIPKNASGKILRKDLIKLA 548          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: MENE_LISMF (2-succinylbenzoate--CoA ligase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=menE PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.992e-20
Identity = 66/213 (30.99%), Postives = 99/213 (46.48%), Query Frame = 3
Query:   15 YGLTETGGIVVSCAWKRNWNLLPAAEKAKLRARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLRE 653
            +G+TET   +V+   K   N + ++ KA   A          EV + D              GEI+L+G  I  GYL +   T     D GWF TGD+G +  +G+L + +R  D+II                    V E AV+ +PD+ WG  P AF+  +E       E E+   C   L  Y +PK +  +++LPKT++GKIQ+  L+E
Sbjct:  279 FGMTETASQIVTLPPKDALNKIGSSGKALFPA----------EVKIADD-------------GEILLKGPSITPGYLHNKKATEASFVD-GWFKTGDIGYLDEEGFLFVLERRSDLIISGGENIYPTEIEHVISEYEGVKEVAVIGKPDDKWGSVPVAFIVAEETFD----EAELRLICETNLAGYKIPKQITIVEKLPKTASGKIQRNKLKE 463          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: LCFB_BACSU (Long-chain-fatty-acid--CoA ligase OS=Bacillus subtilis GN=lcfB PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.992e-20
Identity = 67/216 (31.02%), Postives = 102/216 (47.22%), Query Frame = 3
Query:   12 GYGLTETGGIVVSCAWKRNWNLLPAAEKAKLRARQGVKTTAL-TEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLREI 656
            GYGL+E   +     + R             R    + T+ L  E  V+DP   +  +     +GE++++G  +M GY K P+ T   + D GW YTGD+     DGY  I DR KD+II                  P V EA V+  PD   GE    +V  K   +S  TE++++++C   L  Y  P  + F+D++PK +TGK+ +  LR+I
Sbjct:  314 GYGLSEASPVTCFNPFDRG------------RKPGSIGTSILHVENKVVDP---LGRELPAHQVGELIVKGPNVMKGYYKMPMETEHALKD-GWLYTGDLARRDEDGYFYIVDRKKDMIIVGGYNVYPREVEEVLYSHPDVKEAVVIGVPDPQSGEAVKGYVVPK---RSGVTEEDIMQHCEKHLAKYKRPAAITFLDDIPKNATGKMLRRALRDI 510          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: 4CLL1_ARATH (4-coumarate--CoA ligase-like 1 OS=Arabidopsis thaliana GN=4CLL1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.602e-20
Identity = 56/171 (32.75%), Postives = 90/171 (52.63%), Query Frame = 3
Query:  141 EVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLRE 653
            EV  +DP +G S  ++  T GE+ +R  C+M GY  +   T K + + GW +TGD+G +  DG + I DR K++I                   P+V + AVV  PDE  GE P A V +    K+   E++++ +    + HY   + V F+D +PK+ +GKI + +LR+
Sbjct:  368 EVKFIDPDTGRSLPKN--TSGELCVRSQCVMQGYFMNKEETDKTIDEQGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDVAVVPLPDEEAGEIPAACVVI--NPKATEKEEDILNFVAANVAHYKKVRAVHFVDSIPKSLSGKIMRRLLRD 534          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: LCFA_ECOLI (Long-chain-fatty-acid--CoA ligase OS=Escherichia coli (strain K12) GN=fadD PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.399e-20
Identity = 58/153 (37.91%), Postives = 82/153 (53.59%), Query Frame = 3
Query:  201 GEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIA 659
            GE+ ++G  +MLGY + P  T + + + GW +TGD+ VM  +G+L I DR KD+I+                  P V E A V  P    GE    FV  K+ S    TE+ ++ +CR +L  Y VPK V F DELPK++ GKI +  LR+ A
Sbjct:  405 GELCVKGPQVMLGYWQRPDATDEIIKN-GWLHTGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMQHPGVQEVAAVGVPSGSSGEAVKIFVVKKDPSL---TEESLVTFCRRQLTGYKVPKLVEFRDELPKSNVGKILRRELRDEA 553          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: LCFA_ECOL6 (Long-chain-fatty-acid--CoA ligase OS=Escherichia coli O6 GN=fadD PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.399e-20
Identity = 58/153 (37.91%), Postives = 82/153 (53.59%), Query Frame = 3
Query:  201 GEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIA 659
            GE+ ++G  +MLGY + P  T + + + GW +TGD+ VM  +G+L I DR KD+I+                  P V E A V  P    GE    FV  K+ S    TE+ ++ +CR +L  Y VPK V F DELPK++ GKI +  LR+ A
Sbjct:  405 GELCVKGPQVMLGYWQRPDATDEIIKN-GWLHTGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMQHPGVQEVAAVGVPSGSSGEAVKIFVVKKDPSL---TEESLVTFCRRQLTGYKVPKLVEFRDELPKSNVGKILRRELRDEA 553          
The following BLAST results are available for this feature:
BLAST of CK934313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
4CL1_ORYSJ5.243e-2130.63Probable 4-coumarate--CoA ligase 1 OS=Oryza sativa... [more]
4CL2_ORYSJ6.848e-2133.02Probable 4-coumarate--CoA ligase 2 OS=Oryza sativa... [more]
MENE_LISIN8.944e-2131.342-succinylbenzoate--CoA ligase OS=Listeria innocua... [more]
LCFA_ECO571.526e-2038.56Long-chain-fatty-acid--CoA ligase OS=Escherichia c... [more]
4CLL4_ORYSJ1.526e-2030.564-coumarate--CoA ligase-like 4 OS=Oryza sativa sub... [more]
MENE_LISMF1.992e-2030.992-succinylbenzoate--CoA ligase OS=Listeria monocyt... [more]
LCFB_BACSU1.992e-2031.02Long-chain-fatty-acid--CoA ligase OS=Bacillus subt... [more]
4CLL1_ARATH2.602e-2032.754-coumarate--CoA ligase-like 1 OS=Arabidopsis thal... [more]
LCFA_ECOLI3.399e-2037.91Long-chain-fatty-acid--CoA ligase OS=Escherichia c... [more]
LCFA_ECOL63.399e-2037.91Long-chain-fatty-acid--CoA ligase OS=Escherichia c... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004260_F09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIIF_F09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934313 ID=CK934313; Name=CK934313; organism=Citrus sinensis; type=EST; length=818bp
GGGGGAGTCACGGATATGGGTTGACCGAAACGGGAGGAATCGTGGTGTCG
TGTGCATGGAAAAGGAACTGGAACCTGTTGCCAGCAGCGGAGAAAGCTAA
GCTTAGGGCTAGACAAGGAGTCAAAACGACAGCGTTGACGGAAGTTGACG
TGCTGGATCCGAAGTCGGGAGTGAGTGCAAAACGTGACGGGTCAACGCTG
GGTGAGATTGTACTGAGAGGAGGATGCATAATGCTGGGTTATCTTAAAGA
TCCTATTGGGACCCGTAAGTGCATGACGGATGATGGCTGGTTCTACACCG
GAGACGTTGGGGTGATGCACAGTGATGGGTACTTAGAGATAAAGGATAGA
TCAAAGGATGTTATAATCAGCGGGGGAGAGAACCTGAGCAGCGTGGAGGT
TGAGTCAGTGCTGTATTCGAACCCGGCAGTTAACGAGGCGGCAGTGGTGG
CTCGGCCGGACGAGTTCTGGGGCGAGACGCCTTGTGCATTTGTCAGTTTG
AAGGAGGGGTCGAAAAGTAAACCAACCGAAAAAGAGATGATAGAGTATTG
CAGGGGTAAGTTGCCCCACTACATGGTGCCCAAAACTGTGGTGTTTATGG
ATGAATTGCCCAAGACTTCTACCGGTAAGATTCAAAAGTTTGTGCTCAGA
GAGATTGCTGAGAACATGGGCTCCTCCTCCTCGCCTCTCTCCAGATCATT
GACCAGTCGAATGTAGTAATATTAAACTCGAATCGATCGACGAACTGNCA
GTTAGCATTATTTGCTCCTCCAATAAAATTNNNNNTCCAATCGTAATTAA
AAAAAAAAAAAAAAAAAA
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