CK934313

Overview
NameCK934313
Unique NameCK934313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934313_ssr671 microsatellite CK934313_ssr671:671..682. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10230 contig Csv1_Contig10230:1140..1957. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: LCFA_YERPE (Long-chain-fatty-acid--CoA ligase OS=Yersinia pestis GN=fadD PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.687e-19
Identity = 59/157 (37.58%), Postives = 81/157 (51.59%), Query Frame = 3
Query:  201 GEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENMG 671
            GE+ +RG  +MLGY + P  T   + D GW  TGD+  M  DG+L I DR KD+I+                    V E+AV+  P+E  GE    FV   + S    T +E++ +CR  L  Y VPK V F DELPK++ GKI +  LR+    +G
Sbjct:  405 GELWVRGPQVMLGYWQRPDATDDVLKD-GWLATGDIATMDEDGFLRIVDRKKDMILVSGFNVYPNEIEEVVALHAKVLESAVIGVPNEVSGEAVKVFVVKNDASL---TPEELLTHCRRYLTGYKVPKIVEFRDELPKSNVGKILRRELRDEEVKVG 557          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: ALKK_PSEOL (Medium-chain-fatty-acid--CoA ligase OS=Pseudomonas oleovorans GN=alkK PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.409e-19
Identity = 65/215 (30.23%), Postives = 102/215 (47.44%), Query Frame = 3
Query:    9 HGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLRARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLRE 653
            H +G+TE      +     +   L   EK  LR  QG     + E+ +++ + G+    DG + G ++ RG  ++  Y     G+      DGWF TGDV  + SDG++ I DR+KD+I                   P + +AAV+A   E W E P   +++K    S+ T  E+  Y   K+  + +P   +F++ELP+  TGKI K  LRE
Sbjct:  324 HAWGMTELSPFGTANTPLAHHVDLSPDEKLSLRKSQGRPPYGV-ELKIVNDE-GIRLPEDGRSKGNLMARGHWVIKDYFHSDPGST---LSDGWFSTGDVATIDSDGFMTICDRAKDIIKSGGEWISTVELESIAIAHPHIVDAAVIAARHEKWDERP-LLIAVK-SPNSELTSGEVCNYFADKVARWQIPDAAIFVEELPRNGTGKILKNRLRE 531          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: MENE_BACLD (2-succinylbenzoate--CoA ligase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=menE PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.371e-19
Identity = 51/149 (34.23%), Postives = 77/149 (51.68%), Query Frame = 3
Query:  201 GEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVL 647
            GEI ++G  +M GYLK+    +    +DGWF TGD+G    DG+L + DR  D+II                  P V EA V    D+ WG+ P A++     + S   E+E+ E+C+ +L  Y VPK   F+D LP+ ++ K+ +  L
Sbjct:  335 GEITVKGPTVMKGYLKNEAANKDSF-NDGWFKTGDIGYFDDDGFLYVLDRRSDLIISGGENIYPAEVEAVLLSHPNVAEAGVKGVDDKTWGKVPHAYLV----ADSPVDEEELSEFCKERLASYKVPKAFHFVDRLPRNASNKLMRHKL 478          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: 4CL1_ARATH (4-coumarate--CoA ligase 1 OS=Arabidopsis thaliana GN=4CL1 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.371e-19
Identity = 65/213 (30.52%), Postives = 103/213 (48.36%), Query Frame = 3
Query:   12 GYGLTETGGIVVSCAWKRNWNLLPAAEKAKLRARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLR 650
            GYG+TE G ++         +L  A E   +++          E+ ++DP +G S  R+    GEI +RG  IM GYL +P  T + +  DGW +TGD+G++  D  L I DR K++I                   P + + AVVA  +E  GE P AFV   +   S+ +E ++ ++   ++  Y     V F + +PK  +GKI +  LR
Sbjct:  353 GYGMTEAGPVLAM-------SLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQP--GEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFV--VKSKDSELSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLR 554          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: LUCI_LUCMI (Luciferin 4-monooxygenase OS=Luciola mingrelica PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.093e-18
Identity = 68/216 (31.48%), Postives = 102/216 (47.22%), Query Frame = 3
Query:   12 GYGLTETGGIVVSCAWKRNWNLLPAAEKAKLRARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGK-LPHYMVPKTVVFMDELPKTSTGKIQKFVLREI 656
            GYGLTET    +         + P  +     + + V    +  +D LD K  +   R G    EI ++G  +MLGY  +P  TR+ + ++GW +TGD+G    D +  I DR K +I                   P + +A V   PD   GE P A V +++G     TEKE+++Y   + + H  +   V F+DE+PK  TGKI   V+REI
Sbjct:  341 GYGLTETTSAFI---------ITPEGDDKPGASGKVVPLFKVKVID-LDTKKTLGVNRRG----EICVKGPSLMLGYSNNPEATRETIDEEGWLHTGDIGYYDEDEHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPNIFDAGVAGVPDPDAGELPGAVVVMEKGKTM--TEKEIVDYVNSQVVNHKRLRGGVRFVDEVPKGLTGKIDAKVIREI 540          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: LCFA_SALTY (Long-chain-fatty-acid--CoA ligase OS=Salmonella typhimurium GN=fadD PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.093e-18
Identity = 57/153 (37.25%), Postives = 79/153 (51.63%), Query Frame = 3
Query:  201 GEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIA 659
            GE+ ++G  +MLGY + P  T + + D GW +TGD+ VM  DG+L I DR KD+I+                    V E A V  P    GE    FV  K+ +    T+  +I +CR  L  Y VPK V F +ELPK++ GKI +  LR+ A
Sbjct:  405 GELCVKGPQVMLGYWQRPDATDEIIKD-GWLHTGDIAVMDEDGFLRIVDRKKDMILVSGFNVYPNEIEDVVMQHSGVQEVAAVGVPSGSSGEAVKLFVVKKDPAL---TDDALITFCRRHLTGYKVPKQVEFREELPKSNVGKILRRELRDEA 553          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: LCFA_SALTI (Long-chain-fatty-acid--CoA ligase OS=Salmonella typhi GN=fadD PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.093e-18
Identity = 57/153 (37.25%), Postives = 79/153 (51.63%), Query Frame = 3
Query:  201 GEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIA 659
            GE+ ++G  +MLGY + P  T + + D GW +TGD+ VM  DG+L I DR KD+I+                    V E A V  P    GE    FV  K+ +    T+  +I +CR  L  Y VPK V F +ELPK++ GKI +  LR+ A
Sbjct:  405 GELCVKGPQVMLGYWQRPDATDEIIKD-GWLHTGDIAVMDEDGFLRIVDRKKDMILVSGFNVYPNEIEDVVMQHSGVQEVAAVGVPSGSSGEAVKLFVVKKDPAL---TDDALITFCRRHLTGYKVPKQVEFREELPKSNVGKILRRELRDEA 553          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: 4CLL6_ARATH (4-coumarate--CoA ligase-like 6 OS=Arabidopsis thaliana GN=4CLL6 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.865e-18
Identity = 67/218 (30.73%), Postives = 109/218 (50.00%), Query Frame = 3
Query:   12 GYGLTETGGIVVSCAWKRNWNLLPAAEKAKLRARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAEN 665
            GYG+TE+  +       R +N    +EK    +  G+    + +  V+D  SG S    G+  GE+ ++G  +M GYL +P  T+  + +D W  TGD+     DGYL I DR K++I                   P + +AAV A P+E  GE P AFV  ++  ++  +E+++I Y   ++  Y   + VV ++ +PK+ TGKI +  L+ I  N
Sbjct:  357 GYGMTESTAVGT-----RGFN----SEKLSRYSSVGLLAPNM-QAKVVDWSSG-SFLPPGNR-GELWIQGPGVMKGYLNNPKATQMSIVEDSWLRTGDIAYFDEDGYLFIVDRIKEIIKYKGFQIAPADLEAVLVSHPLIIDAAVTAAPNEECGEIPVAFVVRRQ--ETTLSEEDVISYVASQVAPYRKVRKVVMVNSIPKSPTGKILRKELKRILTN 560          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: 4CL_PINTA (4-coumarate--CoA ligase OS=Pinus taeda GN=4CL PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.426e-18
Identity = 64/213 (30.05%), Postives = 103/213 (48.36%), Query Frame = 3
Query:   12 GYGLTETGGIVVSCAWKRNWNLLPAAEKAKLRARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLR 650
            GYG+TE G ++         NL  A     +++          ++ +LD ++G S   + +  GEI +RG  IM GY+ DP  T   + ++GW +TGDV  +  D  + I DR K++I                   P++ +AAVV +  E  GE P AFV       S+ +E+E+ E+   ++  Y     V F+D +PK+ +GKI +  LR
Sbjct:  332 GYGMTEAGPVLAM-------NLAFAKNPFPVKSGSCGTVVRNAQIKILDTETGESLPHNQA--GEICIRGPEIMKGYINDPESTAATIDEEGWLHTGDVEYIDDDEEIFIVDRVKEIIKYKGFQVAPAELEALLVAHPSIADAAVVPQKHEEAGEVPVAFVV----KSSEISEQEIKEFVAKQVIFYKKIHRVYFVDAIPKSPSGKILRKDLR 531          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: LCFA_HAEIN (Long-chain-fatty-acid--CoA ligase OS=Haemophilus influenzae GN=fadD PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.086e-18
Identity = 66/214 (30.84%), Postives = 94/214 (43.93%), Query Frame = 3
Query:   12 GYGLTETGGIVVSCAWKRNWNLLPAAEKAKLRARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLRE 653
            GYG+TE   ++ +C                +    G     +   D+   K   S  + G   GE+ ++G  +M GY + P  T + + D GW  TGD+ +M     L I DR KD+I+                    V+EA  +  P    GET   FV  K+ S    T  E+  +CR  L  Y VPK + F DELPKT+ GKI + VLR+
Sbjct:  358 GYGMTECSPLIAACP-------------INVVKHNGTIGVPVPNTDIKIIKDDGSDAKIGEA-GELWVKGDQVMRGYWQRPEATSEVLKD-GWMATGDIVIMDESYSLRIVDRKKDIILVSGFNVYPNEIEDVVMLNYKVSEAVAIGVPHAVSGETIKIFVVKKDDSL---TRDELRNHCRQYLTGYKVPKEIEFRDELPKTNVGKILRRVLRD 553          
The following BLAST results are available for this feature:
BLAST of CK934313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
LCFA_YERPE1.687e-1937.58Long-chain-fatty-acid--CoA ligase OS=Yersinia pest... [more]
ALKK_PSEOL6.409e-1930.23Medium-chain-fatty-acid--CoA ligase OS=Pseudomonas... [more]
MENE_BACLD8.371e-1934.232-succinylbenzoate--CoA ligase OS=Bacillus licheni... [more]
4CL1_ARATH8.371e-1930.524-coumarate--CoA ligase 1 OS=Arabidopsis thaliana ... [more]
LUCI_LUCMI1.093e-1831.48Luciferin 4-monooxygenase OS=Luciola mingrelica PE... [more]
LCFA_SALTY1.093e-1837.25Long-chain-fatty-acid--CoA ligase OS=Salmonella ty... [more]
LCFA_SALTI1.093e-1837.25Long-chain-fatty-acid--CoA ligase OS=Salmonella ty... [more]
4CLL6_ARATH1.865e-1830.734-coumarate--CoA ligase-like 6 OS=Arabidopsis thal... [more]
4CL_PINTA5.426e-1830.054-coumarate--CoA ligase OS=Pinus taeda GN=4CL PE=2... [more]
LCFA_HAEIN7.086e-1830.84Long-chain-fatty-acid--CoA ligase OS=Haemophilus i... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004260_F09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIIF_F09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934313 ID=CK934313; Name=CK934313; organism=Citrus sinensis; type=EST; length=818bp
GGGGGAGTCACGGATATGGGTTGACCGAAACGGGAGGAATCGTGGTGTCG
TGTGCATGGAAAAGGAACTGGAACCTGTTGCCAGCAGCGGAGAAAGCTAA
GCTTAGGGCTAGACAAGGAGTCAAAACGACAGCGTTGACGGAAGTTGACG
TGCTGGATCCGAAGTCGGGAGTGAGTGCAAAACGTGACGGGTCAACGCTG
GGTGAGATTGTACTGAGAGGAGGATGCATAATGCTGGGTTATCTTAAAGA
TCCTATTGGGACCCGTAAGTGCATGACGGATGATGGCTGGTTCTACACCG
GAGACGTTGGGGTGATGCACAGTGATGGGTACTTAGAGATAAAGGATAGA
TCAAAGGATGTTATAATCAGCGGGGGAGAGAACCTGAGCAGCGTGGAGGT
TGAGTCAGTGCTGTATTCGAACCCGGCAGTTAACGAGGCGGCAGTGGTGG
CTCGGCCGGACGAGTTCTGGGGCGAGACGCCTTGTGCATTTGTCAGTTTG
AAGGAGGGGTCGAAAAGTAAACCAACCGAAAAAGAGATGATAGAGTATTG
CAGGGGTAAGTTGCCCCACTACATGGTGCCCAAAACTGTGGTGTTTATGG
ATGAATTGCCCAAGACTTCTACCGGTAAGATTCAAAAGTTTGTGCTCAGA
GAGATTGCTGAGAACATGGGCTCCTCCTCCTCGCCTCTCTCCAGATCATT
GACCAGTCGAATGTAGTAATATTAAACTCGAATCGATCGACGAACTGNCA
GTTAGCATTATTTGCTCCTCCAATAAAATTNNNNNTCCAATCGTAATTAA
AAAAAAAAAAAAAAAAAA
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