CK934313

Overview
NameCK934313
Unique NameCK934313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934313_ssr671 microsatellite CK934313_ssr671:671..682. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10230 contig Csv1_Contig10230:1140..1957. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: 4CL2_SOYBN (4-coumarate--CoA ligase 2 OS=Glycine max PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 7.086e-18
Identity = 67/215 (31.16%), Postives = 100/215 (46.51%), Query Frame = 3
Query:   12 GYGLTETGGIVVSCAWKRNWNLLPAAEKAKLRARQGVKTTAL--TEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLR 650
            GYG+TE G ++  C             K   + + G   T +   E+ V+DP++G S   +    GEI +RG  IM GYL D   T   +  +GW +TGDVG +  D  + I DR K++I                   P++ +AAVV + D   GE P AFV    G     TE+ + E+   ++  Y     V F+  +PK+ +GKI +  LR
Sbjct:  350 GYGMTEAGPVLSMCL---------GFAKQPFQTKSGSCGTVVRNAELKVVDPETGRSLGYNQP--GEICIRGQQIMKGYLNDEAATASTIDSEGWLHTGDVGYVDDDDEIFIVDRVKELIKYKGFQVPPAELEGLLVSHPSIADAAVVPQKDVAAGEVPVAFVVRSNGFDL--TEEAVKEFIAKQVVFYKRLHKVYFVHAIPKSPSGKILRKDLR 551          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: 4CLL6_ORYSJ (4-coumarate--CoA ligase-like 6 OS=Oryza sativa subsp. japonica GN=4CLL6 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.209e-17
Identity = 67/217 (30.88%), Postives = 102/217 (47.00%), Query Frame = 3
Query:   15 YGLTETGGIVVSCAWKRNWNLLPAAEKAKLRARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKI--QKFVLREIA 659
            YGLTE+ G V + A         +  +   R +  +  TA  EV  L P             GE+ +RG  +M GY+ DP  T   +T DGW  TGD+   + DGYL + DR K++I                   P + +AAVV  PDE  G+ P AFV  + G+    TE++++      +  Y   + V F++ +PK+  GKI  ++ VL+ +A
Sbjct:  391 YGLTESTGPVATMAGPEESAAYGSVGRLAPRVQAKIVDTATGEV--LGP----------GRRGELWIRGPVVMKGYVGDPEATAATITPDGWLKTGDLCYFNEDGYLYVVDRLKELIKYKGYQVPPAELEHILQSRPEIADAAVVPYPDEEAGQLPMAFVVRQPGAYL--TEQQVMNCVAKHVAPYKKVRRVAFVNAIPKSPAGKILRRELVLQAMA 593          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: ACSM4_RAT (Acyl-coenzyme A synthetase ACSM4, mitochondrial OS=Rattus norvegicus GN=Acsm4 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.593e-17
Identity = 74/224 (33.04%), Postives = 102/224 (45.54%), Query Frame = 3
Query:   12 GYGLTETGGIVVSCAWKRNWNLLPAAEKAKLRARQGVKTTALTEVDVLDPKSGV--SAKRDGSTLGEIVLRGG-----CIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEK---EMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLRE 653
            GYG TE G   + CA ++   + P +           K     +V ++D    +  S K      GEI LR G     C    Y+ +P  T   +  + ++ TGD GVM  DGYL    R+ DVII                  PAV E+AVV+ PD   GE   AF+ L    KS   EK   E+ ++ +     Y  P+ V F+ ELPKT TGKI++ VLR+
Sbjct:  369 GYGQTEVG---IICANRKGEEIKPGSMG---------KGVVPYDVQIIDEHGNILPSGKE-----GEIALRLGSDRPFCFFSEYVDNPEKTDATIRRN-FYITGDRGVMDDDGYLWFVGRADDVIISSGYRIGPFEVESALIEHPAVVESAVVSSPDPIRGEVVKAFIVLAAPFKSSNREKLTAELQDHVKNSTAPYKYPRKVEFVQELPKTITGKIKRNVLRD 574          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: LUCI_LUCCR (Luciferin 4-monooxygenase OS=Luciola cruciata PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.999e-17
Identity = 63/216 (29.17%), Postives = 101/216 (46.76%), Query Frame = 3
Query:   12 GYGLTETGGIVVSCAWKRNWNLLPAAEKAKLRARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPH-YMVPKTVVFMDELPKTSTGKIQKFVLREI 656
            GYGLTET   ++         + P  +     + + V       +D LD K  +   R G    E+ ++G  +M GY+ +P  T++ + ++GW +TGD+G    + +  I DR K +I                   P++ +A V   PD   GE P A V L+ G     TEKE+++Y   ++ +   +   V F+DE+PK  TGKI    +REI
Sbjct:  341 GYGLTETTSAII---------ITPEGDDKPGASGKVVPLFKAKVID-LDTKKSLGPNRRG----EVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNM--TEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREI 540          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: FAT2_YEAST (Peroxisomal-coenzyme A synthetase OS=Saccharomyces cerevisiae GN=FAT2 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.999e-17
Identity = 59/196 (30.10%), Postives = 94/196 (47.96%), Query Frame = 3
Query:   72 NLLPAAEK-AKLRARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTD-DGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLRE 653
            NL P   K   +   QGV    L + D + P   V         GE+ +RG  + LGY  +P   ++  T  + +F TGD G    +G+L +  R K++I                   P ++EA     PD+ +G+   A + LK+G K   T +E++ + +  L  + +P  V F+D+LPKT+TGKIQ+ V+ E
Sbjct:  347 NLPPGKRKPGTVGQPQGVTVVILDDNDNVLPPGKV---------GEVSIRGENVTLGYANNPKANKENFTKRENYFRTGDQGYFDPEGFLVLTGRIKELINRGGEKISPIELDGIMLSHPKIDEAVAFGVPDDMYGQVVQAAIVLKKGEKM--TYEELVNFLKKHLASFKIPTKVYFVDKLPKTATGKIQRRVIAE 531          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: 4CLL5_ARATH (4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana GN=4CLL5 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 5.999e-17
Identity = 64/216 (29.63%), Postives = 102/216 (47.22%), Query Frame = 3
Query:   12 GYGLTETGGIVVSCAWKRNWNLLPAAEKAKLRARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIA 659
            GYGLTE+ GI  S             E+++     G K +A  E  ++DP +G          GE+ L+G  IM GY  +   T   +  +GW  TGD+  +  DG++ + DR K++I                   P + +AAV+  PD+  G+ P A+V  K GS    +EK ++E+   ++  Y   + V F+  +PK  +GKI +  L +IA
Sbjct:  339 GYGLTESTGIGAST---------DTVEESRRYGTAG-KLSASMEGRIVDPVTGQIL--GPKQTGELWLKGPSIMKGYFSNEEATSSTLDSEGWLRTGDLCYIDEDGFIFVVDRLKELIKYKGYQVAPAELEALLLTHPEITDAAVIPFPDKEVGQFPMAYVVRKTGSSL--SEKTIMEFVAKQVAPYKRIRKVAFVSSIPKNPSGKILRKDLIKIA 540          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: LUCI_LUCLA (Luciferin 4-monooxygenase OS=Luciola lateralis PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.835e-17
Identity = 64/216 (29.63%), Postives = 101/216 (46.76%), Query Frame = 3
Query:   12 GYGLTETGGIVVSCAWKRNWNLLPAAEKAKLRARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPH-YMVPKTVVFMDELPKTSTGKIQKFVLREI 656
            GYGLTET   ++         + P  +     + + V       +D LD K  +   R G    E+ ++G  +M GY+ +P  TR+ + ++GW +TGD+G    + +  I DR K +I                   P + +A V   PD   GE P A V L++G     TEKE+++Y   ++ +   +   V F+DE+PK  TGKI    +REI
Sbjct:  341 GYGLTETTSAII---------ITPEGDDKPGASGKVVPLFKAKVID-LDTKKTLGPNRRG----EVCVKGPMLMKGYVDNPEATREIIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPNIFDAGVAGVPDPIAGELPGAVVVLEKGKSM--TEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGKAIREI 540          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: ACSM4_HUMAN (Acyl-coenzyme A synthetase ACSM4, mitochondrial OS=Homo sapiens GN=ACSM4 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.835e-17
Identity = 75/222 (33.78%), Postives = 100/222 (45.05%), Query Frame = 3
Query:   12 GYGLTETGGIVVSCAWKRNWNLLPAAEKAKLRARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLR-----GGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEK---EMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLRE 653
            GYG TE G I   CA ++   + P +           K     +V ++D    V         GEI LR       C    Y+ +P  T   +  D ++ TGD GVM SDGY     R+ DVII                  PAV E+AVV+ PD+  GE   AFV L    KS   EK   E+ ++ +     Y  P+ V F+ ELPKT TGKI++ VLR+
Sbjct:  369 GYGQTEVGMI---CANQKGQEIKPGSMG---------KGMLPYDVQIIDENGNVLPP---GKEGEIALRLKPTRPFCFFSKYVDNPQKTAATIRGD-FYVTGDRGVMDSDGYFWFVGRADDVIISSGYRIGPFEVESALIEHPAVVESAVVSSPDQIRGEVVKAFVVLAAPFKSYNPEKLTLELQDHVKKSTAPYKYPRKVEFVQELPKTITGKIKRNVLRD 574          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: 4CLL9_ARATH (4-coumarate--CoA ligase-like 9 OS=Arabidopsis thaliana GN=4CLL9 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.336e-16
Identity = 66/216 (30.56%), Postives = 101/216 (46.76%), Query Frame = 3
Query:   12 GYGLTETGGIVVSCAWKRNWNLLPAAEKAKLRARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIA 659
            GYGLTE+ G   S              +  ++     + +   E  ++DP +G S    G T GE+ LRG  IM GY+ +   + + +  +GW  TGD+    S+ +L I DR K++I                   P V +AAVV  PDE  GE P AF+  K GS     E ++I++   ++  Y   + V F++ +PK   GKI +  L +IA
Sbjct:  353 GYGLTESSGPAASTF----------GPEEMVKYGSVGRISENMEAKIVDPSTGESLP-PGKT-GELWLRGPVIMKGYVGNEKASAETVDKEGWLKTGDLCYFDSEDFLYIVDRLKELIKYKAYQVPPVELEQILHSNPDVIDAAVVPFPDEDAGEIPMAFIVRKPGSNL--NEAQIIDFVAKQVTPYKKVRRVAFINAIPKNPAGKILRRELTKIA 554          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: MENE_LACLA (2-succinylbenzoate--CoA ligase OS=Lactococcus lactis subsp. lactis GN=menE PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.280e-16
Identity = 52/156 (33.33%), Postives = 81/156 (51.92%), Query Frame = 3
Query:  186 DGSTLGEIVLRGGCIMLGYL-KDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLR 650
            D + +GEI L+   +M  YL + P GT         F TGD+G + +DG+L + +R KD+II                  P + E A+VA+PD  WG+ P  FVS         +++++  +   KL  Y  P+++ FMDELPK ++GKI +  L+
Sbjct:  309 DLAGVGEIWLKSPMLMKAYLGQKPYGTA--------FETGDIGYLDTDGFLYLLNRRKDIIISGGENIYPKEIEDLVYSLPEIKECALVAKPDAKWGQVPILFVS------GNISQEKLENFLTEKLAKYKRPQSITFMDELPKNASGKILRKELK 450          
The following BLAST results are available for this feature:
BLAST of CK934313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
4CL2_SOYBN7.086e-1831.164-coumarate--CoA ligase 2 OS=Glycine max PE=2 SV=2[more]
4CLL6_ORYSJ1.209e-1730.884-coumarate--CoA ligase-like 6 OS=Oryza sativa sub... [more]
ACSM4_RAT4.593e-1733.04Acyl-coenzyme A synthetase ACSM4, mitochondrial OS... [more]
LUCI_LUCCR5.999e-1729.17Luciferin 4-monooxygenase OS=Luciola cruciata PE=1... [more]
FAT2_YEAST5.999e-1730.10Peroxisomal-coenzyme A synthetase OS=Saccharomyces... [more]
4CLL5_ARATH5.999e-1729.634-coumarate--CoA ligase-like 5 OS=Arabidopsis thal... [more]
LUCI_LUCLA7.835e-1729.63Luciferin 4-monooxygenase OS=Luciola lateralis PE=... [more]
ACSM4_HUMAN7.835e-1733.78Acyl-coenzyme A synthetase ACSM4, mitochondrial OS... [more]
4CLL9_ARATH1.336e-1630.564-coumarate--CoA ligase-like 9 OS=Arabidopsis thal... [more]
MENE_LACLA2.280e-1633.332-succinylbenzoate--CoA ligase OS=Lactococcus lact... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004260_F09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIIF_F09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934313 ID=CK934313; Name=CK934313; organism=Citrus sinensis; type=EST; length=818bp
GGGGGAGTCACGGATATGGGTTGACCGAAACGGGAGGAATCGTGGTGTCG
TGTGCATGGAAAAGGAACTGGAACCTGTTGCCAGCAGCGGAGAAAGCTAA
GCTTAGGGCTAGACAAGGAGTCAAAACGACAGCGTTGACGGAAGTTGACG
TGCTGGATCCGAAGTCGGGAGTGAGTGCAAAACGTGACGGGTCAACGCTG
GGTGAGATTGTACTGAGAGGAGGATGCATAATGCTGGGTTATCTTAAAGA
TCCTATTGGGACCCGTAAGTGCATGACGGATGATGGCTGGTTCTACACCG
GAGACGTTGGGGTGATGCACAGTGATGGGTACTTAGAGATAAAGGATAGA
TCAAAGGATGTTATAATCAGCGGGGGAGAGAACCTGAGCAGCGTGGAGGT
TGAGTCAGTGCTGTATTCGAACCCGGCAGTTAACGAGGCGGCAGTGGTGG
CTCGGCCGGACGAGTTCTGGGGCGAGACGCCTTGTGCATTTGTCAGTTTG
AAGGAGGGGTCGAAAAGTAAACCAACCGAAAAAGAGATGATAGAGTATTG
CAGGGGTAAGTTGCCCCACTACATGGTGCCCAAAACTGTGGTGTTTATGG
ATGAATTGCCCAAGACTTCTACCGGTAAGATTCAAAAGTTTGTGCTCAGA
GAGATTGCTGAGAACATGGGCTCCTCCTCCTCGCCTCTCTCCAGATCATT
GACCAGTCGAATGTAGTAATATTAAACTCGAATCGATCGACGAACTGNCA
GTTAGCATTATTTGCTCCTCCAATAAAATTNNNNNTCCAATCGTAATTAA
AAAAAAAAAAAAAAAAAA
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