CK934313

Overview
NameCK934313
Unique NameCK934313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934313_ssr671 microsatellite CK934313_ssr671:671..682. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10230 contig Csv1_Contig10230:1140..1957. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: MENE_STAAR (2-succinylbenzoate--CoA ligase OS=Staphylococcus aureus (strain MRSA252) GN=menE PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.292e-15
Identity = 50/148 (33.78%), Postives = 76/148 (51.35%), Query Frame = 3
Query:  201 GEIVLRGGCIMLGYL--KDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQK 638
            GE++++G  +M GYL   D  GT     ++G+F TGD+  +  +GY+ I DR KD+II                  P + +A  V  PD+ WG+ P  +      S+S  ++ ++I Y    L  Y VPK    +D LP TSTGK+Q+
Sbjct:  347 GELMIKGANVMNGYLYPTDLTGT----FENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGIIDAVCVGHPDDTWGQVPKLYFV----SESNISKAQLIAYLSQHLAKYKVPKHFEKVDTLPYTSTGKLQR 486          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: 4CLL4_ARATH (4-coumarate--CoA ligase-like 4 OS=Arabidopsis thaliana GN=4CLL4 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.292e-15
Identity = 60/216 (27.78%), Postives = 107/216 (49.54%), Query Frame = 3
Query:   12 GYGLTETGGIVVSCAWKRNWNLLPAAEKAKLRARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIA 659
            GY LTE+ G               +AE+++     G  T+ + E  ++DP +G     + +  GE+ L+G  I  GY K+   T + +  +GW  TGD+  +  DG+L + DR K++I                   P + +AAV+  PD+  G+ P A+V  K   +S  +EK++I++   ++  Y   + V F++ +PKT++GK  +  L ++A
Sbjct:  345 GYALTESNG---------GGAFTNSAEESRRYGTAGTLTSDV-EARIVDPNTGRFMGINQT--GELWLKGPSISKGYFKNQEATNETINLEGWLKTGDLCYIDEDGFLFVVDRLKELIKYKGYQVPPAELEALLITHPDILDAAVIPFPDKEAGQYPMAYVVRKH--ESNLSEKQVIDFISKQVAPYKKIRKVSFINSIPKTASGKTLRKDLIKLA 546          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: ACSM4_MOUSE (Acyl-coenzyme A synthetase ACSM4, mitochondrial OS=Mus musculus GN=Acsm4 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.299e-15
Identity = 71/224 (31.70%), Postives = 99/224 (44.20%), Query Frame = 3
Query:   12 GYGLTETGGIVVSCAWKRNWNLLPAAEKAKLRARQGVKTTALTEVDVLDPKSGV--SAKRDGSTLGEIVLR-----GGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEK---EMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLRE 653
            GYG TE G   + CA ++   + P +           K     +V ++D    +  S K      GEI LR       C    Y+ +P  T   +  + ++ TGD GVM  DGY     R+ DVII                  PAV E+AVV+ PD   GE   AF+ L    K    EK   E+ ++ +     Y  P+ V F+ ELPKT TGKI++ VLR+
Sbjct:  369 GYGQTEVG---IICANRKGEAIKPGSMG---------KGVVPYDVQIIDENGNILPSGKE-----GEIALRLKSDRPFCFFSEYVDNPEKTDATIRRN-FYVTGDRGVMDDDGYFWFVGRADDVIISSGYRIGPFEVESALIEHPAVVESAVVSSPDPIRGEVVKAFIVLAAPYKCSNREKLTAELQDHVKNSTAPYKYPRKVEFVQELPKTITGKIKRNVLRD 574          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: 4CLL8_ARATH (4-coumarate--CoA ligase-like 8 OS=Arabidopsis thaliana GN=4CLL8 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 7.333e-15
Identity = 58/206 (28.16%), Postives = 103/206 (50.00%), Query Frame = 3
Query:   12 GYGLTETGGIVVSCAWKRNWNLLPAAEKAKLRARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGK 629
            GY LTE+ G   S         + + E+++     G+ +  + E  ++DP +G     + +  GE+ L+G  I  GY ++     + +T +GW  TGD+  + +DG+L I DR K++I                   P + +AAV+  PD+  G+ P A+V+ K   +S   EK++I++   ++  Y   + V F+D +PKT +GK
Sbjct:  348 GYALTESNGAGAS---------IESVEESRRYGAVGLLSCGV-EARIVDPNTGQVMGLNQT--GELWLKGPSIAKGYFRNE---EEIITSEGWLKTGDLCYIDNDGFLFIVDRLKELIKYKGYQVPPAELEALLLNHPDILDAAVIPFPDKEAGQFPMAYVARK--PESNLCEKKVIDFISKQVAPYKKIRKVAFIDSIPKTPSGK 536          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: 4CL3_DICDI (Probable 4-coumarate--CoA ligase 3 OS=Dictyostelium discoideum GN=4cl3 PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 7.333e-15
Identity = 59/216 (27.31%), Postives = 96/216 (44.44%), Query Frame = 3
Query:   72 NLLPAAEKAKLRARQGVKTTALTEVDVLDPKSGVSAKRDGSTL---------------------GEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYM-VPKTVVFMDELPKTSTGKIQKFVLRE 653
            +L+    K +L  +QG   T L+    + P   V +   G+ L                     GEI ++G  +MLGY  +   T + +  DG+  TGD+G +  DGY  I DRSK++I                   P V +A VV       GE P  FV +K+      TEKE++++   K+ +Y      + F+  +PK++TGK+ +  L++
Sbjct:  332 DLIKERFKGRLVIKQGYGATELSPCCFVTPNGLVKSGSSGTLLPNLLAKIISSETGENLGMGEKGEICIKGPNVMLGYYNNEKATNEVIDKDGFLKTGDIGYVDEDGYFFIIDRSKELIKCKGFQVPPAELEALLLSHPKVADACVVGLSKGDMGEVPRGFVVIKQNESL--TEKELLDWAHPKIANYKHFRGGIFFIPAIPKSATGKLLRKNLKD 545          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: 4CLL7_ORYSJ (4-coumarate--CoA ligase-like 7 OS=Oryza sativa subsp. japonica GN=4CLL7 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.578e-15
Identity = 62/219 (28.31%), Postives = 100/219 (45.66%), Query Frame = 3
Query:   12 GYGLTETGGIVVSCAWKRNWNLLPAAEKAKLRARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENM 668
            GYG TE GGI          + + + E+       G + T   EV ++D  +G          GE+ +RG  +M GY+ D          +GW  TGD+  +  DG+L + DR K++I                   P + +AAV+  P E  G+ P A V  + GSK   TE E++     ++  Y   + V+F+D +PK+ +GKI +   RE+  ++
Sbjct:  350 GYGSTEAGGI----------SRMISQEECNHIGSAG-RVTENVEVKIVDHVTGKPLP--AGQQGELWVRGPAVMTGYVGDNEANATTFNSEGWLKTGDLCYIDQDGFLFVVDRLKELIKYKAYQVPPAELELVLHSLPQIVDAAVMPYPHEEAGQIPVALVVKQPGSKL--TEAEVMYNVAKQVAPYKKIRKVLFVDSIPKSPSGKILR---RELVNHL 550          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: 4CLL3_ORYSJ (4-coumarate--CoA ligase-like 3 OS=Oryza sativa subsp. japonica GN=4CLL3 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.578e-15
Identity = 52/150 (34.67%), Postives = 72/150 (48.00%), Query Frame = 3
Query:  201 GEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLR 650
            GE+ L G  IM GYL D      C   DGW  TGD+     DGYL I  R KD I                   P + + AV +  DE  GE P AFV  + GS    + K+++EY   ++  Y   + VVF++ +PK+  GK+ + +LR
Sbjct:  427 GELWLHGPGIMKGYLSDDDDA--CTRKDGWLRTGDIAYFDLDGYLYIVGRLKDTIKYKGFQIAPGDLEEVLIHHPEILDVAVTSAEDEEAGEIPVAFVVRRSGSNL--SCKQVMEYVAKQVAPYKRVRKVVFVEAIPKSPAGKVLRRLLR 572          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: MENE_STAAU (2-succinylbenzoate--CoA ligase OS=Staphylococcus aureus GN=menE PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.251e-14
Identity = 52/149 (34.90%), Postives = 77/149 (51.68%), Query Frame = 3
Query:  201 GEIVLRGGCIMLGYL--KDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETP-CAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQK 638
            GE++++G  +M  YL   D  GT     ++G+F TGD+  +  +GY+ I DR KD+II                  P +++A  V  PD+ WG+ P   FVS  + SK+     ++I Y    L  Y VPK    +D LP TSTGK+Q+
Sbjct:  347 GELMIKGANVMNVYLYPTDLTGT----FENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDISKA-----QLIAYLSQHLAKYKVPKHFEKVDTLPYTSTGKLQR 486          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: MENE_STAAT (2-succinylbenzoate--CoA ligase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=menE PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.251e-14
Identity = 52/149 (34.90%), Postives = 77/149 (51.68%), Query Frame = 3
Query:  201 GEIVLRGGCIMLGYL--KDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETP-CAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQK 638
            GE++++G  +M  YL   D  GT     ++G+F TGD+  +  +GY+ I DR KD+II                  P +++A  V  PD+ WG+ P   FVS  + SK+     ++I Y    L  Y VPK    +D LP TSTGK+Q+
Sbjct:  347 GELMIKGANVMNVYLYPTDLTGT----FENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDISKA-----QLIAYLSQHLAKYKVPKHFEKVDTLPYTSTGKLQR 486          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: MENE_STAAE (2-succinylbenzoate--CoA ligase OS=Staphylococcus aureus (strain Newman) GN=menE PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.251e-14
Identity = 52/149 (34.90%), Postives = 77/149 (51.68%), Query Frame = 3
Query:  201 GEIVLRGGCIMLGYL--KDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETP-CAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQK 638
            GE++++G  +M  YL   D  GT     ++G+F TGD+  +  +GY+ I DR KD+II                  P +++A  V  PD+ WG+ P   FVS  + SK+     ++I Y    L  Y VPK    +D LP TSTGK+Q+
Sbjct:  347 GELMIKGANVMNVYLYPTDLTGT----FENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDISKA-----QLIAYLSQHLAKYKVPKHFEKVDTLPYTSTGKLQR 486          
The following BLAST results are available for this feature:
BLAST of CK934313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
MENE_STAAR3.292e-1533.782-succinylbenzoate--CoA ligase OS=Staphylococcus a... [more]
4CLL4_ARATH3.292e-1527.784-coumarate--CoA ligase-like 4 OS=Arabidopsis thal... [more]
ACSM4_MOUSE4.299e-1531.70Acyl-coenzyme A synthetase ACSM4, mitochondrial OS... [more]
4CLL8_ARATH7.333e-1528.164-coumarate--CoA ligase-like 8 OS=Arabidopsis thal... [more]
4CL3_DICDI7.333e-1527.31Probable 4-coumarate--CoA ligase 3 OS=Dictyosteliu... [more]
4CLL7_ORYSJ9.578e-1528.314-coumarate--CoA ligase-like 7 OS=Oryza sativa sub... [more]
4CLL3_ORYSJ9.578e-1534.674-coumarate--CoA ligase-like 3 OS=Oryza sativa sub... [more]
MENE_STAAU1.251e-1434.902-succinylbenzoate--CoA ligase OS=Staphylococcus a... [more]
MENE_STAAT1.251e-1434.902-succinylbenzoate--CoA ligase OS=Staphylococcus a... [more]
MENE_STAAE1.251e-1434.902-succinylbenzoate--CoA ligase OS=Staphylococcus a... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004260_F09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIIF_F09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934313 ID=CK934313; Name=CK934313; organism=Citrus sinensis; type=EST; length=818bp
GGGGGAGTCACGGATATGGGTTGACCGAAACGGGAGGAATCGTGGTGTCG
TGTGCATGGAAAAGGAACTGGAACCTGTTGCCAGCAGCGGAGAAAGCTAA
GCTTAGGGCTAGACAAGGAGTCAAAACGACAGCGTTGACGGAAGTTGACG
TGCTGGATCCGAAGTCGGGAGTGAGTGCAAAACGTGACGGGTCAACGCTG
GGTGAGATTGTACTGAGAGGAGGATGCATAATGCTGGGTTATCTTAAAGA
TCCTATTGGGACCCGTAAGTGCATGACGGATGATGGCTGGTTCTACACCG
GAGACGTTGGGGTGATGCACAGTGATGGGTACTTAGAGATAAAGGATAGA
TCAAAGGATGTTATAATCAGCGGGGGAGAGAACCTGAGCAGCGTGGAGGT
TGAGTCAGTGCTGTATTCGAACCCGGCAGTTAACGAGGCGGCAGTGGTGG
CTCGGCCGGACGAGTTCTGGGGCGAGACGCCTTGTGCATTTGTCAGTTTG
AAGGAGGGGTCGAAAAGTAAACCAACCGAAAAAGAGATGATAGAGTATTG
CAGGGGTAAGTTGCCCCACTACATGGTGCCCAAAACTGTGGTGTTTATGG
ATGAATTGCCCAAGACTTCTACCGGTAAGATTCAAAAGTTTGTGCTCAGA
GAGATTGCTGAGAACATGGGCTCCTCCTCCTCGCCTCTCTCCAGATCATT
GACCAGTCGAATGTAGTAATATTAAACTCGAATCGATCGACGAACTGNCA
GTTAGCATTATTTGCTCCTCCAATAAAATTNNNNNTCCAATCGTAATTAA
AAAAAAAAAAAAAAAAAA
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