CK934315

Overview
NameCK934315
Unique NameCK934315
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length416
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:668..1083. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK934315 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 4.645e-37
Identity = 72/74 (97.30%), Postives = 74/74 (100.00%), Query Frame = 1 
Query:    1 GSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 222
            GSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  196 GSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 269
[Close]
BLAST of CK934315 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 6.067e-37
Identity = 72/74 (97.30%), Postives = 74/74 (100.00%), Query Frame = 1 
Query:    1 GSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 222
            GSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  201 GSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 274
[Close]
BLAST of CK934315 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 7.923e-37
Identity = 72/74 (97.30%), Postives = 74/74 (100.00%), Query Frame = 1 
Query:    1 GSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 222
            GSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:   43 GSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 116
[Close]
BLAST of CK934315 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 7.923e-37
Identity = 72/74 (97.30%), Postives = 73/74 (98.65%), Query Frame = 1 
Query:    1 GSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 222
            GSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL+NL DHLADPVNNNAWAYATNFVPGK
Sbjct:  194 GSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVNNNAWAYATNFVPGK 267
[Close]
BLAST of CK934315 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 7.923e-37
Identity = 72/74 (97.30%), Postives = 74/74 (100.00%), Query Frame = 1 
Query:    1 GSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 222
            GSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  194 GSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267
[Close]
BLAST of CK934315 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 7.923e-37
Identity = 72/74 (97.30%), Postives = 74/74 (100.00%), Query Frame = 1 
Query:    1 GSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 222
            GSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  193 GSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266
[Close]
BLAST of CK934315 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.035e-36
Identity = 72/74 (97.30%), Postives = 74/74 (100.00%), Query Frame = 1 
Query:    1 GSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 222
            GSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  192 GSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265
[Close]
BLAST of CK934315 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.035e-36
Identity = 72/74 (97.30%), Postives = 74/74 (100.00%), Query Frame = 1 
Query:    1 GSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 222
            GSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  192 GSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265
[Close]
BLAST of CK934315 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.035e-36
Identity = 72/74 (97.30%), Postives = 74/74 (100.00%), Query Frame = 1 
Query:    1 GSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 222
            GSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  192 GSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265
[Close]
BLAST of CK934315 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.035e-36
Identity = 71/74 (95.95%), Postives = 74/74 (100.00%), Query Frame = 1 
Query:    1 GSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 222
            G+FDPLGLADDP+AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  205 GNFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278
The following BLAST results are available for this feature:
BLAST of CK934315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB22_PEA4.645e-3797.30Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB2B_PINSY6.067e-3797.30Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB2D_SOLLC7.923e-3797.30Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB27_TOBAC7.923e-3797.30Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB23_PETSP7.923e-3797.30Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB21_TOBAC7.923e-3797.30Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB2C_SOLLC1.035e-3697.30Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2B_SOLLC1.035e-3697.30Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB2A_SOLLC1.035e-3697.30Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB2A_PINSY1.035e-3695.95Chlorophyll a-b binding protein type 2 member 1A, ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004260_F10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIIF_F10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934315 ID=CK934315; Name=CK934315; organism=Citrus sinensis; type=EST; length=416bp
GGGAGCTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGA
GCTCAAGGTTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGT
TTGGTTTCTTCGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAAC
TTGGCCGACCACTTGGCTGACCCTGTCAATAACAATGCCTGGGCCTACGC
CACCAACTTTGTCCCCGGAAAGTGAGCTTCGGTTGATAAGAGTTTTTCTC
TTTTCGGTTTCTTGGATATCATGTAAATCTGTTGTGAGCTCATGGAAGCT
TTAATTTGAGTTGTGATTATTTATAAAATGCTTCAATTTGATCTAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAAAAAAAAA
AAAAAAAAAAAAAAAA
back to top