CK934315

Overview
NameCK934315
Unique NameCK934315
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length416
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:668..1083. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934315 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.035e-36
Identity = 71/74 (95.95%), Postives = 74/74 (100.00%), Query Frame = 1
Query:    1 GSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 222
            GSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHL+DPVNNNAW+YATNFVPGK
Sbjct:  195 GSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWSYATNFVPGK 268          
BLAST of CK934315 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.035e-36
Identity = 72/74 (97.30%), Postives = 74/74 (100.00%), Query Frame = 1
Query:    1 GSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 222
            GSFDPLGLADDPEAFAEL+VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  193 GSFDPLGLADDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266          
BLAST of CK934315 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.352e-36
Identity = 71/74 (95.95%), Postives = 74/74 (100.00%), Query Frame = 1
Query:    1 GSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 222
            GSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQA+VTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  193 GSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQALVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266          
BLAST of CK934315 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.352e-36
Identity = 72/74 (97.30%), Postives = 73/74 (98.65%), Query Frame = 1
Query:    1 GSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 222
            GSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA PVNNNAWAYATNFVPGK
Sbjct:  190 GSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAGPVNNNAWAYATNFVPGK 263          
BLAST of CK934315 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.352e-36
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 1
Query:    1 GSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 219
            GSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWAYATNFVPG
Sbjct:  189 GSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPG 261          
BLAST of CK934315 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.765e-36
Identity = 71/74 (95.95%), Postives = 74/74 (100.00%), Query Frame = 1
Query:    1 GSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 222
            GSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWA+ATNFVPGK
Sbjct:  194 GSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267          
BLAST of CK934315 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.765e-36
Identity = 71/74 (95.95%), Postives = 74/74 (100.00%), Query Frame = 1
Query:    1 GSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 222
            GSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWA+ATNFVPGK
Sbjct:  194 GSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267          
BLAST of CK934315 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.765e-36
Identity = 72/74 (97.30%), Postives = 73/74 (98.65%), Query Frame = 1
Query:    1 GSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 222
            GSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW +ATNFVPGK
Sbjct:  194 GSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFATNFVPGK 267          
BLAST of CK934315 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.765e-36
Identity = 72/74 (97.30%), Postives = 73/74 (98.65%), Query Frame = 1
Query:    1 GSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 222
            GSFDPL LADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA+PVNNNAWAYATNFVPGK
Sbjct:  172 GSFDPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVNNNAWAYATNFVPGK 245          
BLAST of CK934315 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.305e-36
Identity = 70/74 (94.59%), Postives = 74/74 (100.00%), Query Frame = 1
Query:    1 GSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 222
            G+FDPLGLADDPEAFA++KVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  192 GTFDPLGLADDPEAFADVKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265          
The following BLAST results are available for this feature:
BLAST of CK934315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB28_PEA1.035e-3695.95Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB21_PETSP1.035e-3697.30Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB25_NICPL1.352e-3695.95Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB23_SOYBN1.352e-3697.30Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB21_MAIZE1.352e-3697.26Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2F_SOLLC1.765e-3695.95Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC1.765e-3695.95Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2A_SPIOL1.765e-3697.30Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_SOYBN1.765e-3697.30Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB29_MAIZE2.305e-3694.59Chlorophyll a-b binding protein M9, chloroplastic ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004260_F10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIIF_F10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934315 ID=CK934315; Name=CK934315; organism=Citrus sinensis; type=EST; length=416bp
GGGAGCTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGA
GCTCAAGGTTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGT
TTGGTTTCTTCGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAAC
TTGGCCGACCACTTGGCTGACCCTGTCAATAACAATGCCTGGGCCTACGC
CACCAACTTTGTCCCCGGAAAGTGAGCTTCGGTTGATAAGAGTTTTTCTC
TTTTCGGTTTCTTGGATATCATGTAAATCTGTTGTGAGCTCATGGAAGCT
TTAATTTGAGTTGTGATTATTTATAAAATGCTTCAATTTGATCTAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAAAAAAAAA
AAAAAAAAAAAAAAAA
back to top