CK934315

Overview
NameCK934315
Unique NameCK934315
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length416
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:668..1083. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934315 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.148e-28
Identity = 57/71 (80.28%), Postives = 63/71 (88.73%), Query Frame = 1
Query:    4 SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 216
            +FDPLGLADDP+ FAELKVKEIKNGRLAMF+  GFFVQAIVTGKGP+ENL DHLA+P  NNA+AYAT F P
Sbjct:  202 AFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENNAFAYATKFTP 272          
BLAST of CK934315 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.723e-28
Identity = 58/71 (81.69%), Postives = 64/71 (90.14%), Query Frame = 1
Query:    4 SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 216
            SFDPLGLADDP+ FAELKVKEIKNGRLA FSMFGFFVQAIVTGKGP++NL DHLA+P  NNA+A+AT F P
Sbjct:  181 SFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAFAFATKFTP 251          
BLAST of CK934315 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.498e-27
Identity = 58/73 (79.45%), Postives = 62/73 (84.93%), Query Frame = 1
Query:    1 GSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 219
            G FDPLGLADDP+ FAELKVKEIKNGRLAMFS  GFFVQAIVTGKGP++NL DHLADP  N A+A AT F PG
Sbjct:  180 GPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFASATKFTPG 252          
BLAST of CK934315 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.391e-25
Identity = 58/73 (79.45%), Postives = 62/73 (84.93%), Query Frame = 1
Query:    1 GSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 219
            GSFD LGLA+D EAFAELKVKE+KNGRLAMFSMFGFFVQAIV+ K  LENLADHL   VNNNA +  TNFVPG
Sbjct:  195 GSFDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNVTNFVPG 267          
BLAST of CK934315 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.040e-20
Identity = 47/62 (75.81%), Postives = 52/62 (83.87%), Query Frame = 1
Query:    1 GSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 186
            G FDPLGLA DPE  A LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  204 GPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNN 265          
BLAST of CK934315 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.160e-20
Identity = 48/73 (65.75%), Postives = 53/73 (72.60%), Query Frame = 1
Query:    1 GSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP-VNNNAWAYATNFVP 216
            G FDPLGLADDP+ F ELKVKEIKNGRLAM  M GF+ QAIVTG+GP+EN   HL DP  +N   A  T F P
Sbjct:   49 GPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTALVTQFAP 121          
BLAST of CK934315 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.405e-17
Identity = 39/60 (65.00%), Postives = 49/60 (81.67%), Query Frame = 1
Query:    7 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 186
            F+PLG   D ++  ELK+KEIKNGRLAM ++ G+F+QA+VTG GP +NL DHLADPVNNN
Sbjct:  206 FNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 265          
BLAST of CK934315 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.189e-16
Identity = 36/60 (60.00%), Postives = 48/60 (80.00%), Query Frame = 1
Query:    7 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 186
            F+PLG   D ++  ELK+KE+KNGRLAM ++ G+F+Q +VTG GP +NL DH+ADPVNNN
Sbjct:  208 FNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNN 267          
BLAST of CK934315 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.315e-15
Identity = 41/63 (65.08%), Postives = 47/63 (74.60%), Query Frame = 1
Query:    1 GSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 186
            G+FDPLG + DP  F ELK+KEIKNGRLAM +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:  170 GAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 232          
BLAST of CK934315 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.315e-15
Identity = 41/63 (65.08%), Postives = 48/63 (76.19%), Query Frame = 1
Query:    1 GSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 186
            G+FDPLG + DP  F ELKVKEIKNGRLA+ ++ GF V Q+   G GPLENLA HLADP +NN
Sbjct:  171 GAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNN 233          
The following BLAST results are available for this feature:
BLAST of CK934315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB2_DUNSA5.148e-2880.28Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLRE6.723e-2881.69Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNTE1.498e-2779.45Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_MALDO2.391e-2579.45Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB26_ARATH1.040e-2075.81Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB21_EUGGR5.160e-2065.75Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB13_SOLLC1.405e-1765.00Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA1.189e-1660.00Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB121_HORVU1.315e-1565.08Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB11_SOLLC1.315e-1565.08Chlorophyll a-b binding protein 6A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004260_F10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIIF_F10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934315 ID=CK934315; Name=CK934315; organism=Citrus sinensis; type=EST; length=416bp
GGGAGCTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGA
GCTCAAGGTTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGT
TTGGTTTCTTCGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAAC
TTGGCCGACCACTTGGCTGACCCTGTCAATAACAATGCCTGGGCCTACGC
CACCAACTTTGTCCCCGGAAAGTGAGCTTCGGTTGATAAGAGTTTTTCTC
TTTTCGGTTTCTTGGATATCATGTAAATCTGTTGTGAGCTCATGGAAGCT
TTAATTTGAGTTGTGATTATTTATAAAATGCTTCAATTTGATCTAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAAAAAAAAA
AAAAAAAAAAAAAAAA
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