CK934325

Overview
NameCK934325
Unique NameCK934325
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934325 vs. ExPASy Swiss-Prot
Match: IAA20_ARATH (Auxin-responsive protein IAA20 OS=Arabidopsis thaliana GN=IAA20 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 8.509e-17
Identity = 42/100 (42.00%), Postives = 61/100 (61.00%), Query Frame = 2
Query:  386 QAKTSESELCRGMYVKVSMDGAPYLRKIDLKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWMLVGDVPWDMFITTCKRLRIMRGS 685
            + + +E       YVKV+M+G P  RKIDL     Y +L+  L+ MF  +I    E +  N   +  TY DK+GDWM+VGDVPW+MF++T +RL+I R +
Sbjct:   73 EEEENECNSVGSFYVKVNMEGVPIGRKIDLMSLNGYRDLIRTLDFMFNASILWAEEEDMCNEKSHVLTYADKEGDWMMVGDVPWEMFLSTVRRLKISRAN 172          
BLAST of CK934325 vs. ExPASy Swiss-Prot
Match: IAA30_ARATH (Auxin-responsive protein IAA30 OS=Arabidopsis thaliana GN=IAA30 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.111e-16
Identity = 46/133 (34.59%), Postives = 71/133 (53.38%), Query Frame = 2
Query:  281 FNAGDDDERDSAPPAKAQVVGWPPIRSYRKNTLQVQAKTSESELCRGMYVKVSMDGAPYLRKIDLKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWMLVGDVPWDMFITTCKRLRIMR 679
            +N GD+ E D    A+  ++               + + +E       YVKV+M+G P  RKIDL     Y +L+  L+ MF  +I    E +  +   +  TY DK+GDWM+VGDVPW+MF+++ +RL+I R
Sbjct:   49 YNGGDNHEYDGVGAAEEMMI-------------MEEEEQNECNSVGSFYVKVNMEGVPIGRKIDLLSLNGYHDLITTLDYMFNASILWAEEEDMCSEKSHVLTYADKEGDWMMVGDVPWEMFLSSVRRLKISR 168          
BLAST of CK934325 vs. ExPASy Swiss-Prot
Match: IAA25_ORYSJ (Auxin-responsive protein IAA25 OS=Oryza sativa subsp. japonica GN=IAA25 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.451e-16
Identity = 54/154 (35.06%), Postives = 81/154 (52.60%), Query Frame = 2
Query:  302 ERDSAPPAKAQVVGWPPIRSYRKNTLQVQAKTSES-----ELCRG-----------------MYVKVSMDGAPYLRKIDLKVYTCYPELLNALENMFQ--LTIG------KYSEREGYNGSDYAPTYEDKDGDWMLVGDVPWDMFITTCKRLRI 673
            +R++   + AQ+VGWPP+R++RKN    +   ++      +LC                   M+VKV+++G    RKIDLK +  Y  L  AL++MF   L+ G      +  + E  +   Y   YED +GD MLVGDVPW++FI + KRL I
Sbjct:   82 QRENRAASSAQLVGWPPVRAFRKNLSTPKPADADDLMNKVKLCSDEGHGSRCAAQERRSSSTMFVKVNLEGYAVGRKIDLKAHRSYDSLSQALQSMFHGFLSDGIATRDNELQQMEEGSKKRYVLVYEDNEGDRMLVGDVPWELFIASVKRLYI 235          
BLAST of CK934325 vs. ExPASy Swiss-Prot
Match: IAA9_ORYSJ (Auxin-responsive protein IAA9 OS=Oryza sativa subsp. japonica GN=IAA9 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.515e-16
Identity = 56/136 (41.18%), Postives = 68/136 (50.00%), Query Frame = 2
Query:  284 NAGDDDERDSAPPAKAQVVGWPPIRSYRKNTLQVQAKTSESELCRGM-YVKVSMDGAPYLRKIDLKVYTCYPELLNALENMFQLTI--GKYSEREGYNGSDYAP--TYEDKDGDWMLVGDVPWDMFITTCKRLRIM 676
            N  DDD R      K  VVGWPP+ S R+              C G  YVKV  +G    RK+DL +++ Y EL   L  MF      G+       +G    P  TYED DGDWMLVGDVPWD F  + KRL+I+
Sbjct:   63 NTSDDDCRRR----KKTVVGWPPVSSARR-------------ACGGANYVKVKKEGDAIGRKVDLALHSSYDELAATLARMFPTNDHQGEKKMANDDHGDAAGPVVTYEDGDGDWMLVGDVPWDDFARSVKRLKIL 181          
BLAST of CK934325 vs. ExPASy Swiss-Prot
Match: IAA8_ORYSJ (Auxin-responsive protein IAA8 OS=Oryza sativa subsp. japonica GN=IAA8 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.742e-14
Identity = 40/104 (38.46%), Postives = 60/104 (57.69%), Query Frame = 2
Query:  416 RGMYVKVSMDGAPYLRKIDLKVYTCYPELLNALENMFQLTIGKYSEREGY-------NGSDYAPTYEDKDGDWMLVGDVPWDMFITTCKRLRIMRGSEAKGLAC 706
            R ++VKV M+G P  RK+DL     Y  L+  L +MF+ +I  +     +       N   +  TYED++GDWM+ GDVPW++F+T+ KRLRI R  +    +C
Sbjct:  102 RSLFVKVYMEGVPIGRKLDLLPLDGYKGLVARLASMFRASITYHHCHRQFAVVGMKTNKVHHVLTYEDQEGDWMMAGDVPWELFLTSVKRLRIARADDKYCYSC 205          
BLAST of CK934325 vs. ExPASy Swiss-Prot
Match: IAA22_ORYSJ (Auxin-responsive protein IAA22 OS=Oryza sativa subsp. japonica GN=IAA22 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.707e-13
Identity = 51/148 (34.46%), Postives = 72/148 (48.65%), Query Frame = 2
Query:  287 AGDDDERDSAPPAKAQVVGWPPIRSYRKN----------TLQVQAK------------TSESELCRGMYVKVSMDGAPYLRKIDLKVYTCYPELLNALENMFQ--LTIG------KYSEREGYNGSDYAPTYEDKDGDWMLVGDVPWD 640
            AG ++  ++   + AQ+VGWPP+R++RKN           L  + K              E      M+VKV+++G    RKIDLK +  Y  L  AL++MF   L+ G      +    E  +   Y   YED +GD MLVGDVPWD
Sbjct:   25 AGWNESGENRAASSAQLVGWPPVRTFRKNLSTPKPADADDLMNKMKPCSDEGHGSRDAAQERRPSSTMFVKVNLEGYAVGRKIDLKAHRSYDSLSQALQSMFHGFLSDGIATRDNELQRMEEGSKKRYVLVYEDNEGDRMLVGDVPWD 172          
BLAST of CK934325 vs. ExPASy Swiss-Prot
Match: IAA29_ARATH (Auxin-responsive protein IAA29 OS=Arabidopsis thaliana GN=IAA29 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.271e-12
Identity = 55/175 (31.43%), Postives = 78/175 (44.57%), Query Frame = 2
Query:  293 DDDERDSAPPAKAQVVGWPPIR-------SYRKN----------------------------TLQVQAKTSESELCRG-MYVKVSMDGAPYLRKIDLKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWMLVGDVPWDMFITTCKRLRIMRGSEAKGLACV 709
            DD+E +S      +VVGWPP++       SY                               T  V + +S S   R  MYVKV MDG    RK+D+K++  Y  L N+L  MF  T  +  +RE  N   Y  T++ K+GDW+L GDV W +F  +  R+ I+R        C+
Sbjct:   87 DDEEENS------EVVGWPPVKTCMIKYGSYHHRHIRNHHHCPYHHRGRRITAMNNNISNPTTATVGSSSSSSISSRSSMYVKVKMDGVAIARKVDIKLFNSYESLTNSLITMF--TEYEDCDREDTN---YTFTFQGKEGDWLLRGDVTWKIFAESVHRISIIRDRPCAYTRCL 250          
The following BLAST results are available for this feature:
BLAST of CK934325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
IAA20_ARATH8.509e-1742.00Auxin-responsive protein IAA20 OS=Arabidopsis thal... [more]
IAA30_ARATH1.111e-1634.59Auxin-responsive protein IAA30 OS=Arabidopsis thal... [more]
IAA25_ORYSJ1.451e-1635.06Auxin-responsive protein IAA25 OS=Oryza sativa sub... [more]
IAA9_ORYSJ5.515e-1641.18Auxin-responsive protein IAA9 OS=Oryza sativa subs... [more]
IAA8_ORYSJ6.742e-1438.46Auxin-responsive protein IAA8 OS=Oryza sativa subs... [more]
IAA22_ORYSJ5.707e-1334.46Auxin-responsive protein IAA22 OS=Oryza sativa sub... [more]
IAA29_ARATH1.271e-1231.43Auxin-responsive protein IAA29 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004260_E06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIIF_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934325 ID=CK934325; Name=CK934325; organism=Citrus sinensis; type=EST; length=735bp
GGGGATCAACTAACAGTTTCCAATCTCATTCAAAATTTGATTGAGTACAC
AAAATTAAAGTATATACATCATAATCCATAACAGAAAATTAAGAAGAAAA
AGTTTCAGCGAATTTGTTAGTGTAGCAATGGAGAGGTTGTTAAGTTTCGA
GAGTGACCATTTGAAGGCAACTGAGCTGCGATTAGGGTTGCCCGGAAGCG
ACAAGCCTAGTGTTAGAGCCAACAATAATAAGCGAGCTTCATCTGAGATT
TCTCAGGAGTCTAAGAGCAATTCTTGTGCTTTTAATGCTGGAGACGATGA
TGAAAGGGACAGTGCTCCTCCTGCCAAGGCACAAGTGGTGGGTTGGCCTC
CGATTCGATCATATCGCAAGAACACGTTGCAAGTACAAGCAAAGACAAGT
GAGAGTGAATTATGTCGGGGAATGTACGTTAAAGTAAGCATGGATGGAGC
TCCTTATCTGAGAAAGATAGATCTCAAGGTTTACACGTGCTATCCGGAGC
TGCTTAATGCCTTGGAAAATATGTTCCAGTTAACAATTGGCAAATATTCA
GAGAGGGAAGGCTACAATGGATCTGATTATGCCCCAACATACGAGGATAA
AGATGGTGATTGGATGCTCGTTGGCGATGTTCCGTGGGATATGTTTATTA
CCACTTGCAAGAGACTAAGAATCATGAGAGGGTCAGAAGCCAAAGGCTTA
GCCTGTGTATGAAATGAAATATGAACCCACCGAGT
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