CK934336

Overview
NameCK934336
Unique NameCK934336
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length549
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934336_ssr78 microsatellite CK934336_ssr78:78..89. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3493 contig Csv1_Contig3493:87..635. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934336 vs. ExPASy Swiss-Prot
Match: SUMO2_MACFA (Small ubiquitin-related modifier 2 OS=Macaca fascicularis GN=SUMO2 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.655e-18
Identity = 46/91 (50.55%), Postives = 57/91 (62.64%), Query Frame = 3
Query:  105 DKKP-----VDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMGDGDEIDAMLHQTGG 362
            D+KP      + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEM D D ID    QTGG
Sbjct:    3 DEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93          
BLAST of CK934336 vs. ExPASy Swiss-Prot
Match: SUMO2_HUMAN (Small ubiquitin-related modifier 2 OS=Homo sapiens GN=SUMO2 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.655e-18
Identity = 46/91 (50.55%), Postives = 57/91 (62.64%), Query Frame = 3
Query:  105 DKKP-----VDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMGDGDEIDAMLHQTGG 362
            D+KP      + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEM D D ID    QTGG
Sbjct:    3 DEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93          
BLAST of CK934336 vs. ExPASy Swiss-Prot
Match: SUMO2_CRIGR (Small ubiquitin-related modifier 2 OS=Cricetulus griseus GN=SUMO2 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.655e-18
Identity = 46/91 (50.55%), Postives = 57/91 (62.64%), Query Frame = 3
Query:  105 DKKP-----VDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMGDGDEIDAMLHQTGG 362
            D+KP      + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEM D D ID    QTGG
Sbjct:    3 DEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93          
BLAST of CK934336 vs. ExPASy Swiss-Prot
Match: SUMO2_CHICK (Small ubiquitin-related modifier 2 OS=Gallus gallus GN=SUMO2 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.655e-18
Identity = 46/91 (50.55%), Postives = 57/91 (62.64%), Query Frame = 3
Query:  105 DKKP-----VDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMGDGDEIDAMLHQTGG 362
            D+KP      + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEM D D ID    QTGG
Sbjct:    3 DEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93          
BLAST of CK934336 vs. ExPASy Swiss-Prot
Match: SUMO2_BOVIN (Small ubiquitin-related modifier 2 OS=Bos taurus GN=SUMO2 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.655e-18
Identity = 46/91 (50.55%), Postives = 57/91 (62.64%), Query Frame = 3
Query:  105 DKKP-----VDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMGDGDEIDAMLHQTGG 362
            D+KP      + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEM D D ID    QTGG
Sbjct:    3 DEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93          
BLAST of CK934336 vs. ExPASy Swiss-Prot
Match: SMO2A_XENLA (Small ubiquitin-related modifier 2-A OS=Xenopus laevis GN=sumo2-A PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.655e-18
Identity = 46/92 (50.00%), Postives = 57/92 (61.96%), Query Frame = 3
Query:  105 DKKP-----VDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMGDGDEIDAMLHQTGGA 365
            D KP      + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEM D D ID    QTGG+
Sbjct:    3 DDKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGS 94          
BLAST of CK934336 vs. ExPASy Swiss-Prot
Match: SUMO3_RAT (Small ubiquitin-related modifier 3 OS=Rattus norvegicus GN=Sumo3 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.261e-17
Identity = 46/90 (51.11%), Postives = 59/90 (65.56%), Query Frame = 3
Query:   96 QEEDKKPVD-QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMGDGDEIDAMLHQTGG 362
            +E+ K+ V  ++ HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEM D D ID    QTGG
Sbjct:    3 EEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 92          
BLAST of CK934336 vs. ExPASy Swiss-Prot
Match: SUMO3_HUMAN (Small ubiquitin-related modifier 3 OS=Homo sapiens GN=SUMO3 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.261e-17
Identity = 46/90 (51.11%), Postives = 59/90 (65.56%), Query Frame = 3
Query:   96 QEEDKKPVD-QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMGDGDEIDAMLHQTGG 362
            +E+ K+ V  ++ HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEM D D ID    QTGG
Sbjct:    3 EEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 92          
BLAST of CK934336 vs. ExPASy Swiss-Prot
Match: SUMO3_CHICK (Small ubiquitin-related modifier 3 OS=Gallus gallus GN=SUMO3 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.261e-17
Identity = 46/90 (51.11%), Postives = 59/90 (65.56%), Query Frame = 3
Query:   96 QEEDKKPVD-QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMGDGDEIDAMLHQTGG 362
            +E+ K+ V  ++ HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEM D D ID    QTGG
Sbjct:    3 EEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINEADTPAQLEMEDEDTIDVFQQQTGG 92          
BLAST of CK934336 vs. ExPASy Swiss-Prot
Match: SUMO2_XENTR (Small ubiquitin-related modifier 2 OS=Xenopus tropicalis GN=sumo2 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.261e-17
Identity = 46/92 (50.00%), Postives = 57/92 (61.96%), Query Frame = 3
Query:  105 DKKP-----VDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMGDGDEIDAMLHQTGGA 365
            D KP      + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEM D D ID    QTGG+
Sbjct:    3 DDKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLNKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGS 94          
The following BLAST results are available for this feature:
BLAST of CK934336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
SUMO2_MACFA9.655e-1850.55Small ubiquitin-related modifier 2 OS=Macaca fasci... [more]
SUMO2_HUMAN9.655e-1850.55Small ubiquitin-related modifier 2 OS=Homo sapiens... [more]
SUMO2_CRIGR9.655e-1850.55Small ubiquitin-related modifier 2 OS=Cricetulus g... [more]
SUMO2_CHICK9.655e-1850.55Small ubiquitin-related modifier 2 OS=Gallus gallu... [more]
SUMO2_BOVIN9.655e-1850.55Small ubiquitin-related modifier 2 OS=Bos taurus G... [more]
SMO2A_XENLA9.655e-1850.00Small ubiquitin-related modifier 2-A OS=Xenopus la... [more]
SUMO3_RAT1.261e-1751.11Small ubiquitin-related modifier 3 OS=Rattus norve... [more]
SUMO3_HUMAN1.261e-1751.11Small ubiquitin-related modifier 3 OS=Homo sapiens... [more]
SUMO3_CHICK1.261e-1751.11Small ubiquitin-related modifier 3 OS=Gallus gallu... [more]
SUMO2_XENTR1.261e-1750.00Small ubiquitin-related modifier 2 OS=Xenopus trop... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004260_D08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIIF_D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934336 ID=CK934336; Name=CK934336; organism=Citrus sinensis; type=EST; length=549bp
GGGGCTAACCAGAGGCGCAGAAACAAAGAGAGGGTAAAATTCAATTCTAA
GAACCTGTGAGGATGTCAGCGACCGGTGGCGGCGGCGGCGGTGGTCAGGA
GGAGGACAAGAAGCCCGTCGATCAGTCGGCGCACATTAACCTCAAAGTCA
AGGGCCAGGATGGCAATGAGGTGTTTTTTAGAATTAAGCGAAGCACCCAG
TTGAAAAAACTCATGAATGCCTACTGTGATCGGCAGTCGGTGGAGTTAAA
CTCTATTGCTTTCTTGTTTGATGGGCGGAGACTCCGAGGAGAGCAGACTC
CAGATGAGCTTGAGATGGGGGATGGAGATGAAATTGATGCAATGCTGCAT
CAGACTGGAGGTGCGCTTGGAAGCGGTTAGCTGCAGTTTGAAATATTTTG
AGCATCGCTGGCGGACTTGATGTTTGAGTTTTTTAAATTAGCCTATATCT
ATGGAAATATTACTGTAAATGATGACTTGGATCTTATAATTAACTTGAAT
TTAAGTCATGGTTTATTACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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