CK934336

Overview
NameCK934336
Unique NameCK934336
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length549
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934336_ssr78 microsatellite CK934336_ssr78:78..89. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3493 contig Csv1_Contig3493:87..635. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934336 vs. ExPASy Swiss-Prot
Match: SUMO1_PONAB (Small ubiquitin-related modifier 1 OS=Pongo abelii GN=SUMO1 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.298e-16
Identity = 40/87 (45.98%), Postives = 55/87 (63.22%), Query Frame = 3
Query:  102 EDKKPVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMGDGDEIDAMLHQTGG 362
            ED     +  +I LKV GQD +E+ F++K +T LKKL  +YC RQ V +NS+ FLF+G+R+    TP EL M + D I+    QTGG
Sbjct:   11 EDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97          
BLAST of CK934336 vs. ExPASy Swiss-Prot
Match: SUMO1_PIG (Small ubiquitin-related modifier 1 OS=Sus scrofa GN=SUMO1 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.298e-16
Identity = 40/87 (45.98%), Postives = 55/87 (63.22%), Query Frame = 3
Query:  102 EDKKPVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMGDGDEIDAMLHQTGG 362
            ED     +  +I LKV GQD +E+ F++K +T LKKL  +YC RQ V +NS+ FLF+G+R+    TP EL M + D I+    QTGG
Sbjct:   11 EDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97          
BLAST of CK934336 vs. ExPASy Swiss-Prot
Match: SUMO1_MOUSE (Small ubiquitin-related modifier 1 OS=Mus musculus GN=Sumo1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.298e-16
Identity = 40/87 (45.98%), Postives = 55/87 (63.22%), Query Frame = 3
Query:  102 EDKKPVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMGDGDEIDAMLHQTGG 362
            ED     +  +I LKV GQD +E+ F++K +T LKKL  +YC RQ V +NS+ FLF+G+R+    TP EL M + D I+    QTGG
Sbjct:   11 EDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97          
BLAST of CK934336 vs. ExPASy Swiss-Prot
Match: SUMO1_HUMAN (Small ubiquitin-related modifier 1 OS=Homo sapiens GN=SUMO1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.298e-16
Identity = 40/87 (45.98%), Postives = 55/87 (63.22%), Query Frame = 3
Query:  102 EDKKPVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMGDGDEIDAMLHQTGG 362
            ED     +  +I LKV GQD +E+ F++K +T LKKL  +YC RQ V +NS+ FLF+G+R+    TP EL M + D I+    QTGG
Sbjct:   11 EDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97          
BLAST of CK934336 vs. ExPASy Swiss-Prot
Match: SUMO1_CHICK (Small ubiquitin-related modifier 1 OS=Gallus gallus GN=SUMO1 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.298e-16
Identity = 40/87 (45.98%), Postives = 55/87 (63.22%), Query Frame = 3
Query:  102 EDKKPVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMGDGDEIDAMLHQTGG 362
            ED     +  +I LKV GQD +E+ F++K +T LKKL  +YC RQ V +NS+ FLF+G+R+    TP EL M + D I+    QTGG
Sbjct:   11 EDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRITDNHTPKELGMEEEDVIEVYQEQTGG 97          
BLAST of CK934336 vs. ExPASy Swiss-Prot
Match: SUMO1_BOVIN (Small ubiquitin-related modifier 1 OS=Bos taurus GN=SUMO1 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.298e-16
Identity = 40/87 (45.98%), Postives = 55/87 (63.22%), Query Frame = 3
Query:  102 EDKKPVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMGDGDEIDAMLHQTGG 362
            ED     +  +I LKV GQD +E+ F++K +T LKKL  +YC RQ V +NS+ FLF+G+R+    TP EL M + D I+    QTGG
Sbjct:   11 EDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97          
BLAST of CK934336 vs. ExPASy Swiss-Prot
Match: SUMO1_CERNI (Small ubiquitin-related modifier 1 OS=Cervus nippon GN=SUMO1 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.919e-16
Identity = 40/87 (45.98%), Postives = 55/87 (63.22%), Query Frame = 3
Query:  102 EDKKPVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMGDGDEIDAMLHQTGG 362
            ED     +  +I LKV GQD +E+ F++K +T LKKL  +YC RQ V +NS+ FLF+G+R+    TP EL M + D I+    QTGG
Sbjct:   11 EDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYHEQTGG 97          
BLAST of CK934336 vs. ExPASy Swiss-Prot
Match: SMT3_YEAST (Ubiquitin-like protein SMT3 OS=Saccharomyces cerevisiae GN=SMT3 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.919e-16
Identity = 43/89 (48.31%), Postives = 62/89 (69.66%), Query Frame = 3
Query:  102 EDKKPVDQSAHINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMGDGDEIDAMLHQTGGA 365
            E K  V    HINLKV   DG+ E+FF+IK++T L++LM A+  RQ  E++S+ FL+DG R++ +QTP++L+M D D I+A   Q GGA
Sbjct:   13 EVKPEVKPETHINLKVS--DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGA 99          
BLAST of CK934336 vs. ExPASy Swiss-Prot
Match: SMO1A_XENLA (Small ubiquitin-related modifier 1-A OS=Xenopus laevis GN=sumo1-A PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.629e-15
Identity = 42/86 (48.84%), Postives = 56/86 (65.12%), Query Frame = 3
Query:  105 DKKPVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMGDGDEIDAMLHQTGG 362
            DKK  D   +I LKV GQD +E+ F++K +T LKKL  +Y  RQ V +NS+ FLF+G+R+   QTP EL M + D I+    QTGG
Sbjct:   15 DKK--DGGDYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYRQRQGVPMNSLRFLFEGQRISDHQTPKELGMEEEDVIEVYQEQTGG 98          
BLAST of CK934336 vs. ExPASy Swiss-Prot
Match: SUMO4_HUMAN (Small ubiquitin-related modifier 4 OS=Homo sapiens GN=SUMO4 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 7.650e-15
Identity = 39/81 (48.15%), Postives = 50/81 (61.73%), Query Frame = 3
Query:  120 DQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMGDGDEIDAMLHQTGG 362
            + + HINLKV GQDG+ V F+IKR T L KLM AYC+ + + +  I F F G+ + G   P +LEM D D ID     TGG
Sbjct:   13 ENNNHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCEPRGLSMKQIRFRFGGQPISGTDKPAQLEMEDEDTIDVFQQPTGG 93          
The following BLAST results are available for this feature:
BLAST of CK934336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
SUMO1_PONAB5.298e-1645.98Small ubiquitin-related modifier 1 OS=Pongo abelii... [more]
SUMO1_PIG5.298e-1645.98Small ubiquitin-related modifier 1 OS=Sus scrofa G... [more]
SUMO1_MOUSE5.298e-1645.98Small ubiquitin-related modifier 1 OS=Mus musculus... [more]
SUMO1_HUMAN5.298e-1645.98Small ubiquitin-related modifier 1 OS=Homo sapiens... [more]
SUMO1_CHICK5.298e-1645.98Small ubiquitin-related modifier 1 OS=Gallus gallu... [more]
SUMO1_BOVIN5.298e-1645.98Small ubiquitin-related modifier 1 OS=Bos taurus G... [more]
SUMO1_CERNI6.919e-1645.98Small ubiquitin-related modifier 1 OS=Cervus nippo... [more]
SMT3_YEAST6.919e-1648.31Ubiquitin-like protein SMT3 OS=Saccharomyces cerev... [more]
SMO1A_XENLA2.629e-1548.84Small ubiquitin-related modifier 1-A OS=Xenopus la... [more]
SUMO4_HUMAN7.650e-1548.15Small ubiquitin-related modifier 4 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004260_D08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIIF_D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934336 ID=CK934336; Name=CK934336; organism=Citrus sinensis; type=EST; length=549bp
GGGGCTAACCAGAGGCGCAGAAACAAAGAGAGGGTAAAATTCAATTCTAA
GAACCTGTGAGGATGTCAGCGACCGGTGGCGGCGGCGGCGGTGGTCAGGA
GGAGGACAAGAAGCCCGTCGATCAGTCGGCGCACATTAACCTCAAAGTCA
AGGGCCAGGATGGCAATGAGGTGTTTTTTAGAATTAAGCGAAGCACCCAG
TTGAAAAAACTCATGAATGCCTACTGTGATCGGCAGTCGGTGGAGTTAAA
CTCTATTGCTTTCTTGTTTGATGGGCGGAGACTCCGAGGAGAGCAGACTC
CAGATGAGCTTGAGATGGGGGATGGAGATGAAATTGATGCAATGCTGCAT
CAGACTGGAGGTGCGCTTGGAAGCGGTTAGCTGCAGTTTGAAATATTTTG
AGCATCGCTGGCGGACTTGATGTTTGAGTTTTTTAAATTAGCCTATATCT
ATGGAAATATTACTGTAAATGATGACTTGGATCTTATAATTAACTTGAAT
TTAAGTCATGGTTTATTACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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