CK934336

Overview
NameCK934336
Unique NameCK934336
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length549
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934336_ssr78 microsatellite CK934336_ssr78:78..89. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3493 contig Csv1_Contig3493:87..635. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK934336 vs. ExPASy Swiss-Prot
Match: SUMO1_DANRE (Small ubiquitin-related modifier 1 OS=Danio rerio GN=sumo1 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.704e-14
Identity = 38/77 (49.35%), Postives = 51/77 (66.23%), Query Frame = 3 
Query:  132 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMGDGDEIDAMLHQTGG 362
            +I LKV GQD +E+ F++K +T LKKL  +Y  RQ V +NS+ FLF+G+R+    TP EL M D D I+    QTGG
Sbjct:   20 YIKLKVIGQDNSEIHFKVKMTTHLKKLKESYSQRQGVPVNSLRFLFEGQRITDNLTPKELGMEDEDVIEVYQEQTGG 96
[Close]
BLAST of CK934336 vs. ExPASy Swiss-Prot
Match: SUMO1_ONCMY (Small ubiquitin-related modifier 1 OS=Oncorhynchus mykiss GN=sumo1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.907e-14
Identity = 40/95 (42.11%), Postives = 56/95 (58.95%), Query Frame = 3 
Query:   99 EEDKKPVDQSA-------HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMGDGDEIDAMLHQTGG 362
            + D KP  Q         +I LKV GQD +E+ F++K +T LKKL  +Y  RQ V ++++ FLF+G+R+    TP EL M D D I+    QTGG
Sbjct:    3 DTDTKPSGQDGGDQKDGEYIKLKVIGQDNSEIHFKVKMTTHLKKLKESYSQRQGVHMSTLRFLFEGQRISDNHTPKELGMEDEDVIEVYQEQTGG 97
The following BLAST results are available for this feature:
BLAST of CK934336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
SUMO1_DANRE1.704e-1449.35Small ubiquitin-related modifier 1 OS=Danio rerio ... [more]
SUMO1_ONCMY2.907e-1442.11Small ubiquitin-related modifier 1 OS=Oncorhynchus... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004260_D08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIIF_D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934336 ID=CK934336; Name=CK934336; organism=Citrus sinensis; type=EST; length=549bp
GGGGCTAACCAGAGGCGCAGAAACAAAGAGAGGGTAAAATTCAATTCTAA
GAACCTGTGAGGATGTCAGCGACCGGTGGCGGCGGCGGCGGTGGTCAGGA
GGAGGACAAGAAGCCCGTCGATCAGTCGGCGCACATTAACCTCAAAGTCA
AGGGCCAGGATGGCAATGAGGTGTTTTTTAGAATTAAGCGAAGCACCCAG
TTGAAAAAACTCATGAATGCCTACTGTGATCGGCAGTCGGTGGAGTTAAA
CTCTATTGCTTTCTTGTTTGATGGGCGGAGACTCCGAGGAGAGCAGACTC
CAGATGAGCTTGAGATGGGGGATGGAGATGAAATTGATGCAATGCTGCAT
CAGACTGGAGGTGCGCTTGGAAGCGGTTAGCTGCAGTTTGAAATATTTTG
AGCATCGCTGGCGGACTTGATGTTTGAGTTTTTTAAATTAGCCTATATCT
ATGGAAATATTACTGTAAATGATGACTTGGATCTTATAATTAACTTGAAT
TTAAGTCATGGTTTATTACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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