CK934339

Overview
NameCK934339
Unique NameCK934339
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1408 contig Csv1_Contig1408:4..848. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934339 vs. ExPASy Swiss-Prot
Match: RTNLN_ARATH (Reticulon-like protein B14 OS=Arabidopsis thaliana GN=RTNLB14 PE=2 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 6.909e-32
Identity = 73/194 (37.63%), Postives = 115/194 (59.28%), Query Frame = 3
Query:  252 RERPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWS--NASTFINESPPEIPVVTLPE---KFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSVVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKVLKKV 818
            R R ++H LG G+ ADI  W+NKK S  +LG  T +W LFE++EY  IT +C I +L + +  +WS   +S  I   PP I  + + E   +F+         +IN  +  L +I+SG+D +     +  LW+LSVVGN+ + +TL YIVFV L T+P++YE+YE+++     K+  ++KK    F+ KV+ K+
Sbjct:   18 RRRSLYHNLGGGRFADIMFWKNKKESGTILGVFTLIWFLFEVVEYPFITFLCQILLLFIFIFLIWSYIGSSQLIQSKPPSINDLRISESNWRFLFN-------KINWFIIKLYDISSGKDFRLLFLAVVSLWILSVVGNYFSSLTLLYIVFVGLETIPMLYEQYEEELTYAASKSGRDMKKLLNKFNSKVINKI 204          
BLAST of CK934339 vs. ExPASy Swiss-Prot
Match: RTNLL_ARATH (Reticulon-like protein B12 OS=Arabidopsis thaliana GN=RTNLB12 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.903e-30
Identity = 63/167 (37.72%), Postives = 100/167 (59.88%), Query Frame = 3
Query:  240 RLFGRERPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINESPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSVVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKI 740
            +LF R+R IH +LG G  AD+ LWR K +S G++    A W++FE   Y + TL+  + +L L++LFLWS +++ +N   P +P   + E    E +  LR  +N+ L V  +IA  RD + +  V   L+LLS++G+  +F TL +   +++ TVP  YE+YED I
Sbjct:    7 KLFNRDRTIHEILGGGIVADVMLWRKKNVSVGIVTVTIASWMVFEAFAYTIFTLISSVLLLLLSILFLWSKSASILNRPSPPLPEFQISEAMAEEASIWLRIHVNKLLQVSHDIAMARDSELYTKVAVSLFLLSLIGSLMDFQTLCHTSVLVVMTVPAFYERYEDYI 173          
BLAST of CK934339 vs. ExPASy Swiss-Prot
Match: RTNLP_ARATH (Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.080e-28
Identity = 59/197 (29.95%), Postives = 106/197 (53.81%), Query Frame = 3
Query:  228 SKVFRLFGRERPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINESPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSVVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKVLKKV 818
            S  +RL GR+  +H  +G GK AD+ LWR + +S GV+  +T  W++FE      +++   + ++ + + F+ +  S F N     +P + L E+ V   A++ R ++N  L +  ++  G D + F  V+  LWLLS +G++ +  TL YI  +L  T+P +Y KY+ K+D         +   Y + DE V+ ++
Sbjct:   20 SSDYRLLGRQITVHQFMGGGKAADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWLLSAIGSYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHYKIVDENVISRL 216          
BLAST of CK934339 vs. ExPASy Swiss-Prot
Match: RTNLK_ARATH (Reticulon-like protein B11 OS=Arabidopsis thaliana GN=RTNLB11 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.300e-27
Identity = 61/160 (38.12%), Postives = 96/160 (60.00%), Query Frame = 3
Query:  264 IHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINESPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSVVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKID 743
            +H  LGAG  AD+ LWRN+  +  +L  +T  W LFE   Y+L++ V ++ +L +A+ FLW+ ++T +N   P +P + +PE+F  + A  LR  IN  L++  +I   R+  + L V   LW +S VG   N +TL YI  +L  + P++YEKY+D ID
Sbjct:   13 VHQSLGAGSVADLLLWRNRTGAVILLISSTGFWFLFERAGYNLLSFVSNVLLLLVAIFFLWAKSATVLNRPLPPVPNMEIPEEFANKAADDLRVWINYVLSIASDITIARNPIRLLQVSLVLWAISYVGTLINSLTLVYIGVLLSLSFPIVYEKYQDHID 172          
BLAST of CK934339 vs. ExPASy Swiss-Prot
Match: RTNLO_ARATH (Reticulon-like protein B15 OS=Arabidopsis thaliana GN=RTNLB15 PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 2.463e-21
Identity = 64/192 (33.33%), Postives = 102/192 (53.12%), Query Frame = 3
Query:  264 IHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSN-ASTFINESPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSVVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKVLKKVLSRIPK 836
            +  +LG G  AD+ LW++K  S   L  AT  W L E +E  L+ L+C I +L + +LFLW+     F    PP    +  P+  +     AL   +   L +L EIA G+D K FL  I  + ++  +G++ + +T+ YI  V   T+PV+Y ++++ IDSF  K + E      VF     K+V+S+IP+
Sbjct:    4 VDQILGDGAVADLCLWKDKINSGITLVMATLFWFLLEFMEARLVPLLCSILLLLMLILFLWAKFGEVFFTRRPPTPEELNQPDSPL----KALFSMMEGHLLMLYEIAYGKDNKTFLKTILYVAIIYNIGSYISLLTILYICLVCSMTIPVVYMQFQELIDSFMGKVSEEKNNLLEVF-----KQVVSKIPR 186          
BLAST of CK934339 vs. ExPASy Swiss-Prot
Match: RTNLM_ARATH (Reticulon-like protein B13 OS=Arabidopsis thaliana GN=RTNLB13 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.678e-18
Identity = 49/172 (28.49%), Postives = 90/172 (52.33%), Query Frame = 3
Query:  297 DIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINESPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSVVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKVLK 812
            DI+LWR KK++   L  +T+ W+L     +  IT+V  I I  ++++FLW +    +++  PE+  + + E+FV+E   + R  +   +  +  + +  +   F   + G W+LS +GN  +F T  +I  V+  TVP ++E+Y D+I         + K  Y    EK+L+
Sbjct:   18 DIYLWRRKKLAFSTLLVSTSTWILLSFYGFTTITIVSWIGIAVVSMIFLWGSLLRLLSKVEPELSGLEVSEEFVVETVRSCRMLMEEMVRWMFRVGAESEWFVFARTVLGFWILSRIGNLLDFHTCLFIGLVMGLTVPKLWEEYGDQIQKHLGSLKDKSKGAYNTTHEKILE 189          
The following BLAST results are available for this feature:
BLAST of CK934339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RTNLN_ARATH6.909e-3237.63Reticulon-like protein B14 OS=Arabidopsis thaliana... [more]
RTNLL_ARATH2.903e-3037.72Reticulon-like protein B12 OS=Arabidopsis thaliana... [more]
RTNLP_ARATH2.080e-2829.95Reticulon-like protein B16 OS=Arabidopsis thaliana... [more]
RTNLK_ARATH2.300e-2738.13Reticulon-like protein B11 OS=Arabidopsis thaliana... [more]
RTNLO_ARATH2.463e-2133.33Reticulon-like protein B15 OS=Arabidopsis thaliana... [more]
RTNLM_ARATH5.678e-1828.49Reticulon-like protein B13 OS=Arabidopsis thaliana... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004260_C06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIIF_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934339 ID=CK934339; Name=CK934339; organism=Citrus sinensis; type=EST; length=845bp
GGGGTTCCCACCGAGTCTCGCTCTCTCTCGTTCTAGAGTCTAGTACATTT
TTCAATTCATTTTCATCGGCGCTTACTCGGCGGCAGAGATCTATGGCGGA
ACATGCACCTGAGCACGAATCATCCGACAAATCACTGGTGGAGAAGATCA
CGGATAAGATCCATGGCCACGACTCCTCGTCATCTGACTCCGATGACGAC
AAGCCGTCGTCTATTGACGCCTTTAAGTCCAAAGTATTCAGGCTCTTCGG
AAGAGAAAGACCTATTCACCATGTCCTCGGAGCTGGAAAACCTGCTGATA
TTTTCCTATGGAGGAACAAGAAAATATCTGCTGGTGTGCTAGGTGGAGCC
ACTGCAATGTGGGTTCTCTTTGAGTTGCTGGAATACCATTTAATCACTTT
GGTCTGCCATATATCGATTCTCTCTCTGGCTGTTCTCTTCCTGTGGTCCA
ATGCATCCACATTTATCAACGAATCACCGCCAGAGATTCCAGTTGTTACA
CTTCCTGAGAAGTTTGTCCTTGAATTCGCCTCTGCCTTGAGGTATGAAAT
CAACCGAGCCTTGGCTGTCCTGCGGGAAATTGCATCTGGAAGGGACTTGA
AGAAGTTTCTTGGTGTCATTGCTGGCTTGTGGCTTTTGTCTGTTGTCGGT
AATTGGTGCAACTTCGTGACATTATTCTACATTGTATTTGTTTTGCTACA
CACCGTGCCCGTGATTTATGAGAAGTACGAGGACAAGATTGATTCATTTG
GTGAGAAGGCAACGATTGAGATCAAGAAGCAATATGCAGTCTTTGATGAA
AAGGTTTTGAAGAAGGTTTTGAGTCGAATTCCCAAAGGTGCATTG
back to top