CK934342

Overview
NameCK934342
Unique NameCK934342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934342_ssr33 microsatellite CK934342_ssr33:33..58. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9537 contig Csv1_Contig9537:1..888. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934342 vs. ExPASy Swiss-Prot
Match: HOX18_ORYSJ (Homeobox-leucine zipper protein HOX18 OS=Oryza sativa subsp. japonica GN=HOX18 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 5.056e-28
Identity = 62/101 (61.39%), Postives = 76/101 (75.25%), Query Frame = 3
Query:  555 GISDDEDGDTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRAL 857
            G S    G  +RKKL+L+K+QS +LE+SF+ HN L+            L+PRQVEVWFQNRRARTKLKQTEVDCEFLKRCCE+LTEEN++L+ E+ ELR L
Sbjct:  103 GGSGGGGGGGTRKKLQLTKEQSTLLEDSFRVHNILSHAQKHELARQLKLKPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCESLTEENKQLKHELMELRRL 203          
BLAST of CK934342 vs. ExPASy Swiss-Prot
Match: HOX26_ORYSJ (Putative homeobox-leucine zipper protein HOX26 OS=Oryza sativa subsp. japonica GN=HOX26 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.067e-25
Identity = 63/143 (44.06%), Postives = 82/143 (57.34%), Query Frame = 3
Query:  495 KRSEREPNGDELEMERACS-----RGISDDEDGD-------------TSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSP 869
            +R E E         R+C      RG  DD+DGD              SRKKLRL+ +Q+ +LE+SF+ HN L+           GL  RQVEVWFQNRRARTKLKQTE DC+ L+R C++L  +N RL++++ ELR    SP
Sbjct:   67 QRGEAEAEATTTRQRRSCKKGRRGRGDDDDDDGDRRSPSGGGGDEEGASRKKLRLTGEQATLLEDSFRAHNILSHAEKQELAGKLGLSARQVEVWFQNRRARTKLKQTEADCDLLRRWCDHLAADNARLRRDLAELRRSSSSP 209          
BLAST of CK934342 vs. ExPASy Swiss-Prot
Match: ATHBX_ARATH (Homeobox-leucine zipper protein ATHB-X OS=Arabidopsis thaliana GN=ATHB-X PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.391e-24
Identity = 59/101 (58.42%), Postives = 72/101 (71.29%), Query Frame = 3
Query:  564 DDEDGDTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLS 866
            D   G   RKKLRL+K+QS +LEESF +++TL P           L  RQVEVWFQNRRAR+KLK TE++CE+LKR   +L E+NRRLQ EV+ELRALK S
Sbjct:   60 DSNSGGRRRKKLRLTKEQSHLLEESFIQNHTLTPKQKKDLATFLKLSQRQVEVWFQNRRARSKLKHTEMECEYLKRWFGSLKEQNRRLQIEVEELRALKPS 160          
BLAST of CK934342 vs. ExPASy Swiss-Prot
Match: ATB23_ARATH (Homeobox-leucine zipper protein ATHB-23 OS=Arabidopsis thaliana GN=ATHB-23 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.579e-13
Identity = 41/96 (42.71%), Postives = 56/96 (58.33%), Query Frame = 3
Query:  567 DEDGDTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRA 854
            D+      KK RL+ +Q   LE+ F+  N L            GL+PRQ+ +WFQNRRAR+K KQ E D + LKR  E+L +EN  LQ + Q+L+A
Sbjct:   63 DDGSKMGEKKRRLNMEQLKALEKDFELGNKLESDRKLELARALGLQPRQIAIWFQNRRARSKTKQLEKDYDMLKRQFESLRDENEVLQTQNQKLQA 158          
BLAST of CK934342 vs. ExPASy Swiss-Prot
Match: ATB13_ARATH (Homeobox-leucine zipper protein ATHB-13 OS=Arabidopsis thaliana GN=ATHB-13 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 4.594e-13
Identity = 49/126 (38.89%), Postives = 64/126 (50.79%), Query Frame = 3
Query:  492 GKRSERE-----PNGDELEMERACSRGISDDEDGDTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRA 854
            GKRS  E       G+ +  E   S     D+      KK RL+ +Q   LE++F+  N L P          GL+PRQ+ +WFQNRRAR K KQ E D + LKR  + L  EN  LQ   Q+L+A
Sbjct:   52 GKRSPMEGCCDLETGNNMNGEEDYS-----DDGSQMGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDTLKRQFDTLKAENDLLQTHNQKLQA 172          
BLAST of CK934342 vs. ExPASy Swiss-Prot
Match: HOX5_ORYSJ (Homeobox-leucine zipper protein HOX5 OS=Oryza sativa subsp. japonica GN=HOX5 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.978e-12
Identity = 41/98 (41.84%), Postives = 52/98 (53.06%), Query Frame = 3
Query:  573 DGDTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLS 866
            D     KK RL+ +Q  +LE SF+E N L P          G+ PRQV VWFQNRRAR K KQ E D + LK   + L  ++  L  +   LRA  +S
Sbjct:   80 DEQAPEKKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLEHDFDRLKAAYDALAADHHALLSDNDRLRAQVIS 177          
BLAST of CK934342 vs. ExPASy Swiss-Prot
Match: HOX5_ORYSI (Homeobox-leucine zipper protein HOX5 OS=Oryza sativa subsp. indica GN=HOX5 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.978e-12
Identity = 41/98 (41.84%), Postives = 52/98 (53.06%), Query Frame = 3
Query:  573 DGDTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLS 866
            D     KK RL+ +Q  +LE SF+E N L P          G+ PRQV VWFQNRRAR K KQ E D + LK   + L  ++  L  +   LRA  +S
Sbjct:   80 DEQAPEKKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLEHDFDRLKAAYDALAADHHALLSDNDRLRAQVIS 177          
BLAST of CK934342 vs. ExPASy Swiss-Prot
Match: HOX16_ORYSJ (Homeobox-leucine zipper protein HOX16 OS=Oryza sativa subsp. japonica GN=HOX16 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.132e-11
Identity = 42/99 (42.42%), Postives = 52/99 (52.53%), Query Frame = 3
Query:  573 DGDTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCC-------ENLTEENRRLQKEVQEL 848
            D     KK RL+ +Q  +LE SF+E N L P          GL+PRQV VWFQNRRAR K KQ E D + LK          + L ++N RL  +V  L
Sbjct:   71 DEQLPEKKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKQLERDFDRLKASFDALRADHDALLQDNHRLHSQVMSL 169          
BLAST of CK934342 vs. ExPASy Swiss-Prot
Match: HOX16_ORYSI (Homeobox-leucine zipper protein HOX16 OS=Oryza sativa subsp. indica GN=HOX16 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.132e-11
Identity = 42/99 (42.42%), Postives = 52/99 (52.53%), Query Frame = 3
Query:  573 DGDTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCC-------ENLTEENRRLQKEVQEL 848
            D     KK RL+ +Q  +LE SF+E N L P          GL+PRQV VWFQNRRAR K KQ E D + LK          + L ++N RL  +V  L
Sbjct:   73 DEQLPEKKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKQLERDFDRLKASFDALRADHDALLQDNHRLHSQVMSL 171          
BLAST of CK934342 vs. ExPASy Swiss-Prot
Match: HOX21_ORYSJ (Homeobox-leucine zipper protein HOX21 OS=Oryza sativa subsp. japonica GN=HOX21 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.478e-11
Identity = 39/96 (40.62%), Postives = 53/96 (55.21%), Query Frame = 3
Query:  567 DEDGDTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRA 854
            D+      KK RL+ +Q   LE++F+  N L P          GL+PRQV +WFQNRRAR K KQ E D + LKR  + +  EN  L    ++L+A
Sbjct:  122 DDGSQAGEKKRRLNVEQVRTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDALKRQLDAVKAENDALLNHNKKLQA 217          
The following BLAST results are available for this feature:
BLAST of CK934342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
HOX18_ORYSJ5.056e-2861.39Homeobox-leucine zipper protein HOX18 OS=Oryza sat... [more]
HOX26_ORYSJ3.067e-2544.06Putative homeobox-leucine zipper protein HOX26 OS=... [more]
ATHBX_ARATH3.391e-2458.42Homeobox-leucine zipper protein ATHB-X OS=Arabidop... [more]
ATB23_ARATH1.579e-1342.71Homeobox-leucine zipper protein ATHB-23 OS=Arabido... [more]
ATB13_ARATH4.594e-1338.89Homeobox-leucine zipper protein ATHB-13 OS=Arabido... [more]
HOX5_ORYSJ2.978e-1241.84Homeobox-leucine zipper protein HOX5 OS=Oryza sati... [more]
HOX5_ORYSI2.978e-1241.84Homeobox-leucine zipper protein HOX5 OS=Oryza sati... [more]
HOX16_ORYSJ1.132e-1142.42Homeobox-leucine zipper protein HOX16 OS=Oryza sat... [more]
HOX16_ORYSI1.132e-1142.42Homeobox-leucine zipper protein HOX16 OS=Oryza sat... [more]
HOX21_ORYSJ1.478e-1140.63Homeobox-leucine zipper protein HOX21 OS=Oryza sat... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004260_C09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIIF_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934342 ID=CK934342; Name=CK934342; organism=Citrus sinensis; type=EST; length=890bp
GGGGATTGATTAGCTATCGACTCTTCCTCTTCCTCTCTCTCTCTCTCTCT
CTCTCTCTCCGGAGGCACAGAATTTCTCTTGTTACTCGAATAAAGAGCCG
TTTGAGCAAGAACAAGAACACTTCAAATACTATACAAATACGTCAAATAA
TTTAAAGCTAGAGCTGTTTGAGCAAGAACAAGAAAACAGCCATGGCTGAG
AAAGATGATCTGGGTTTGAGTCTTAGCTTGAGCTTTCCTCAAAATCACCA
TTCTTTACAGCTAAATCTCATGCCTTCTTCTGCTTGTTCCACTTCTCCTT
CTGGTTTCAGTCTCCAAAAAACCCCTTGGAACGAGGCCTTATTCCCACCT
TCAGATCCAAACTCTGAGTCTTGTCGCGCCGAGACCCGATCATTTCTTAG
AGGAATCGACGTGAATCGATTGCCGTCACATGCAGATAACGAAGAAGAAG
TGGGCGTCTCATCTCCTAACAGCACGATTTCGAGCGTTAGCGGCAAGAGA
AGCGAGCGGGAACCTAATGGAGATGAGCTCGAAATGGAGAGAGCTTGCTC
CCGTGGTATCAGCGACGATGAAGATGGTGACACTTCAAGAAAGAAGCTGA
GACTTTCTAAAGATCAGTCAGCCATTCTTGAAGAGAGCTTCAAAGAGCAC
AACACTCTCAACCCAAAGCAAAAGTTGGCGTTGGCAAAGCAGCTTGGTCT
CAGACCTAGACAGGTGGAAGTGTGGTTCCAGAACAGAAGGGCAAGGACCA
AATTGAAGCAAACTGAGGTTGACTGCGAATTCTTGAAGAGATGCTGTGAG
AATCTGACGGAGGAGAACAGGCGGTTGCAGAAAGAAGTTCAGGAGCTGAG
AGCACTGAAGCTTTCCCCGCAGTTCTACATGCAAATGACC
back to top