CK934346

Overview
NameCK934346
Unique NameCK934346
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6080 contig Csv1_Contig6080:61..676. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934346 vs. ExPASy Swiss-Prot
Match: RL31_HELVI (60S ribosomal protein L31 OS=Heliothis virescens GN=RpL31 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.465e-26
Identity = 60/116 (51.72%), Postives = 76/116 (65.52%), Query Frame = 3
Query:   69 EKAGKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVID 416
            E+ GK    EVVTREYT+NLHKRLHG  FKK+AP+AIKEIRKFA+K MGT DVRVD +LNK +WS                  ND+ED+  + ++LVT   +P   +KGL T+ +D
Sbjct:    7 ERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDVRVDTRLNKFLWSKGVRNVPFRVRVRLSRRRNDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 120          
BLAST of CK934346 vs. ExPASy Swiss-Prot
Match: RL31_ICTPU (60S ribosomal protein L31 OS=Ictalurus punctatus GN=rpl31 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.148e-25
Identity = 58/117 (49.57%), Postives = 75/117 (64.10%), Query Frame = 3
Query:   69 EKAGKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDE 419
            +K G+    EVVTREYTIN+HKR+HG +FKK+AP+AIKEIRKFA K MGT DVR+D +LNK VW+                  N++ED+  + Y+LVT   +P    KGL T  +DE
Sbjct:   10 KKKGRSAINEVVTREYTINVHKRIHGISFKKRAPRAIKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGVRNVPYRMRVRLSRKRNEDEDSPNKLYTLVTY--VPVTTYKGLQTVNVDE 124          
BLAST of CK934346 vs. ExPASy Swiss-Prot
Match: RL31_PAROL (60S ribosomal protein L31 OS=Paralichthys olivaceus GN=rpl31 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.219e-24
Identity = 59/117 (50.43%), Postives = 74/117 (63.25%), Query Frame = 3
Query:   69 EKAGKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDE 419
            +K G+    EVVTREYTIN+HKR+HG  FKK+AP+AIKEIRKFA K MGT DVR+D +LNK VWS                  N++ED+  + Y+LVT   +P    KGL T  +DE
Sbjct:    9 KKKGRSAINEVVTREYTINVHKRIHGVGFKKRAPRAIKEIRKFAVKEMGTPDVRIDTRLNKAVWSKGVRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTY--VPVTTCKGLQTVNVDE 123          
BLAST of CK934346 vs. ExPASy Swiss-Prot
Match: RL31_RAT (60S ribosomal protein L31 OS=Rattus norvegicus GN=Rpl31 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.903e-24
Identity = 56/117 (47.86%), Postives = 73/117 (62.39%), Query Frame = 3
Query:   69 EKAGKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDE 419
            +K G+    EVVTREYTIN+HKR+HG  FKK+AP+A+KEIRKFA K MGT DVR+D +LNK VW+                  N++ED+  + Y+LVT   +P    K L T  +DE
Sbjct:   10 KKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTY--VPVTTFKNLQTVNVDE 124          
BLAST of CK934346 vs. ExPASy Swiss-Prot
Match: RL31_PIG (60S ribosomal protein L31 OS=Sus scrofa GN=RPL31 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.903e-24
Identity = 56/117 (47.86%), Postives = 73/117 (62.39%), Query Frame = 3
Query:   69 EKAGKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDE 419
            +K G+    EVVTREYTIN+HKR+HG  FKK+AP+A+KEIRKFA K MGT DVR+D +LNK VW+                  N++ED+  + Y+LVT   +P    K L T  +DE
Sbjct:   10 KKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTY--VPVTTFKNLQTVNVDE 124          
BLAST of CK934346 vs. ExPASy Swiss-Prot
Match: RL31_MOUSE (60S ribosomal protein L31 OS=Mus musculus GN=Rpl31 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.903e-24
Identity = 56/117 (47.86%), Postives = 73/117 (62.39%), Query Frame = 3
Query:   69 EKAGKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDE 419
            +K G+    EVVTREYTIN+HKR+HG  FKK+AP+A+KEIRKFA K MGT DVR+D +LNK VW+                  N++ED+  + Y+LVT   +P    K L T  +DE
Sbjct:   10 KKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTY--VPVTTFKNLQTVNVDE 124          
BLAST of CK934346 vs. ExPASy Swiss-Prot
Match: RL31_MARMO (60S ribosomal protein L31 OS=Marmota monax GN=RPL31 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.903e-24
Identity = 56/117 (47.86%), Postives = 73/117 (62.39%), Query Frame = 3
Query:   69 EKAGKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDE 419
            +K G+    EVVTREYTIN+HKR+HG  FKK+AP+A+KEIRKFA K MGT DVR+D +LNK VW+                  N++ED+  + Y+LVT   +P    K L T  +DE
Sbjct:   10 KKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTY--VPVTTFKNLQTVNVDE 124          
BLAST of CK934346 vs. ExPASy Swiss-Prot
Match: RL31_HUMAN (60S ribosomal protein L31 OS=Homo sapiens GN=RPL31 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.903e-24
Identity = 56/117 (47.86%), Postives = 73/117 (62.39%), Query Frame = 3
Query:   69 EKAGKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDE 419
            +K G+    EVVTREYTIN+HKR+HG  FKK+AP+A+KEIRKFA K MGT DVR+D +LNK VW+                  N++ED+  + Y+LVT   +P    K L T  +DE
Sbjct:   10 KKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTY--VPVTTFKNLQTVNVDE 124          
BLAST of CK934346 vs. ExPASy Swiss-Prot
Match: RL31_BOVIN (60S ribosomal protein L31 OS=Bos taurus GN=RPL31 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.903e-24
Identity = 56/117 (47.86%), Postives = 73/117 (62.39%), Query Frame = 3
Query:   69 EKAGKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDE 419
            +K G+    EVVTREYTIN+HKR+HG  FKK+AP+A+KEIRKFA K MGT DVR+D +LNK VW+                  N++ED+  + Y+LVT   +P    K L T  +DE
Sbjct:   10 KKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTY--VPVTTFKNLQTVNVDE 124          
BLAST of CK934346 vs. ExPASy Swiss-Prot
Match: RL31_XENLA (60S ribosomal protein L31 OS=Xenopus laevis GN=rpl31 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.761e-23
Identity = 56/117 (47.86%), Postives = 73/117 (62.39%), Query Frame = 3
Query:   69 EKAGKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDE 419
            +K G+    EVVTREYTIN+HKR+HG  FKK+AP+A+KEIRKFA K M T DVR+D +LNK VW+                  N++ED+  + Y+LVT   +P    KGL T  +DE
Sbjct:   10 KKKGRSAINEVVTREYTINIHKRIHGIGFKKRAPRALKEIRKFAVKEMRTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTY--VPVTNYKGLQTVNVDE 124          
The following BLAST results are available for this feature:
BLAST of CK934346 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RL31_HELVI6.465e-2651.7260S ribosomal protein L31 OS=Heliothis virescens G... [more]
RL31_ICTPU7.148e-2549.5760S ribosomal protein L31 OS=Ictalurus punctatus G... [more]
RL31_PAROL1.219e-2450.4360S ribosomal protein L31 OS=Paralichthys olivaceu... [more]
RL31_RAT7.903e-2447.8660S ribosomal protein L31 OS=Rattus norvegicus GN=... [more]
RL31_PIG7.903e-2447.8660S ribosomal protein L31 OS=Sus scrofa GN=RPL31 P... [more]
RL31_MOUSE7.903e-2447.8660S ribosomal protein L31 OS=Mus musculus GN=Rpl31... [more]
RL31_MARMO7.903e-2447.8660S ribosomal protein L31 OS=Marmota monax GN=RPL3... [more]
RL31_HUMAN7.903e-2447.8660S ribosomal protein L31 OS=Homo sapiens GN=RPL31... [more]
RL31_BOVIN7.903e-2447.8660S ribosomal protein L31 OS=Bos taurus GN=RPL31 P... [more]
RL31_XENLA1.761e-2347.8660S ribosomal protein L31 OS=Xenopus laevis GN=rpl... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004260_B07 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIIF_B07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934346 ID=CK934346; Name=CK934346; organism=Citrus sinensis; type=EST; length=670bp
GGGGAGCAGCCGCAGACGCAGAGTGTAGAAGCTCGAGAGCAGAAAAAGAA
GAAGCAACAACAATGGTGGAGAAAGCTGGTAAAGGAAGAAAAGAAGAGGT
CGTCACTCGCGAATATACCATTAATCTCCACAAACGCTTGCATGGCTGCA
CCTTCAAGAAGAAAGCTCCAAAAGCCATAAAGGAAATTAGGAAGTTTGCT
CAAAAAGCCATGGGGACAACTGATGTTAGGGTGGATGTGAAGCTCAACAA
GCAAGTGTGGAGCCGTGGTATCCGTAGTGTACCAAGGAGAATTCGTGTTC
GTGTTGCACGGAAGAGAAACGATGAGGAAGATGCCAAAGAAGAGTTCTAC
TCTCTCGTCACTGTTGCCGAGATCCCTCCAGAAGGACTCAAGGGGCTGGG
CACCAAGGTCATTGATGAGGAAGATTGAAGCAACCTTTCTGTTTAGCTAA
GGAACTCCAAATTTTGGCTATAATTTTATCTTATTTAGTTGCTTTTTTGG
TTTTGGATTTACTTTTTAGAACTGCCTTGGGCCAAAAAAGGTTTCGTGAA
CGTATTGTGATTTATGCATTTACCCTGTTTAAGAAAAAAAAAAAAAAAGC
AAAAAGACAAAAAAAAAAACAAAAACCCAAAAAAAANNNNNNCCAAAAAA
NNNNAAAAAAAAAAAAAAAA
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