CK934347

Overview
NameCK934347
Unique NameCK934347
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7887 contig Csv1_Contig7887:101..782. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934347 vs. ExPASy Swiss-Prot
Match: FADA_SACD2 (3-ketoacyl-CoA thiolase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=fadA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.196e-14
Identity = 50/152 (32.89%), Postives = 78/152 (51.32%), Query Frame = 2
Query:  215 DVVIVAAYRTAICKGKRGGFKDTLADDLLAPVLKAVIEKTR-LNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSE 667
            DVVIV   RT + + K G +++  ADDL A ++  ++ +   L+P+++ D++ G V+  G       R     AG P TVP +TVNR C S + A+   A  I AGL D+ +  G+E M    I +   V+P   +          MG+T+E
Sbjct:    7 DVVIVDYARTPMGRSKNGCYRNVRADDLSADLITGLLARNAALDPAQIDDMIWGCVMQRGEQGFNVARNILLRAGLPHTVPAQTVNRLCGSSMSALHTAAANIMAGLGDVYLVGGVEHM--GHIDMNQHVDPNPALGHSVAQAAGSMGLTAE 156          
BLAST of CK934347 vs. ExPASy Swiss-Prot
Match: THIL_MYCLE (Probable acetyl-CoA acetyltransferase OS=Mycobacterium leprae GN=fadA4 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.727e-13
Identity = 49/117 (41.88%), Postives = 65/117 (55.56%), Query Frame = 2
Query:  221 VIVAAYRTAICKGKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT 571
            VIV   RT I K   G  KD  A DL A  + A ++K  + PS V  +++G VL  G+ + M  R AA  AG    VP  T+N+ C SGL A+A     I+AG +D+ +A G ESMT
Sbjct:    5 VIVTGARTPIGK-LMGSLKDFSASDLGAITIAAALKKANVAPSIVQYVIIGQVLTAGAGQ-MPARQAAVAAGIGWDVPALTINKMCLSGLDAIALADQLIRAGEFDVVVAGGQESMT 119          
BLAST of CK934347 vs. ExPASy Swiss-Prot
Match: ATOB_PSEAE (Acetyl-CoA acetyltransferase OS=Pseudomonas aeruginosa GN=atoB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.727e-13
Identity = 59/169 (34.91%), Postives = 93/169 (55.03%), Query Frame = 2
Query:  215 DVVIVAAYRTAICKGKRGGFKDTLAD----DLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVG-----QVNPKVEIFTQARDCL------LPMGITSENVA 676
            DVVIVAA RTA+     G F+ +LA     +L A V++ ++E+T L+  +V ++++G VL  GS +    R AA  AG P  VP  T+N+ C SGL+A+   A AI+ G  ++ +A G E+M++    + G     ++     + +   D L        MGIT+EN+A
Sbjct:    3 DVVIVAATRTAV-----GSFQGSLAGIPAPELGAAVIRRLLEQTGLDAGQVDEVILGQVLTAGSGQN-PARQAAIKAGLPVGVPAMTLNKVCGSGLKALHLGAQAIRCGDAEVIVAGGQENMSLAPYVMPGARTGLRMGHAKLVDSMIEDGLWDAFNDYHMGITAENLA 165          
BLAST of CK934347 vs. ExPASy Swiss-Prot
Match: FADA_AERHH (3-ketoacyl-CoA thiolase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=fadA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.848e-13
Identity = 47/119 (39.50%), Postives = 67/119 (56.30%), Query Frame = 2
Query:  215 DVVIVAAYRTAICKGKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESM 568
            DVVIV   RT + + K G F++  A+DL A ++K+++ +   L+P+E+ DI  G V           R AA  AG P+ V   TVNR C S +QA+ D + AI+ G  DI I  G+E M
Sbjct:    3 DVVIVDCIRTPMGRSKGGAFRNVRAEDLSAHLMKSILLRNPNLDPNEIEDIYWGCVQQTLEQGFNIARNAALLAGIPKQVGAVTVNRLCGSSMQALHDASRAIQVGDGDIFIIGGVEHM 121          
BLAST of CK934347 vs. ExPASy Swiss-Prot
Match: ATOB_ECOLI (Acetyl-CoA acetyltransferase OS=Escherichia coli (strain K12) GN=atoB PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.026e-13
Identity = 59/164 (35.98%), Postives = 85/164 (51.83%), Query Frame = 2
Query:  221 VIVAAYRTAICKGKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFT-QARDCLL-----------PMGITSENVA 676
            VIV+A RTAI     G    T A DL A V+KA IE+ +++   V ++++G VL  G  +    R A   +G  ETV   TVN+ C SGL++VA  A AI+AG     +A G+E+M++    +  +      +   Q  D +L            MGIT+ENVA
Sbjct:    5 VIVSAVRTAI-GSFNGSLASTSAIDLGATVIKAAIERAKIDSQHVDEVIMGNVLQAGLGQN-PARQALLKSGLAETVCGFTVNKVCGSGLKSVALAAQAIQAGQAQSIVAGGMENMSLAPYLLDAKARSGYRLGDGQVYDVILRDGLMCATHGYHMGITAENVA 166          
BLAST of CK934347 vs. ExPASy Swiss-Prot
Match: THIL_CHRVI (Acetyl-CoA acetyltransferase OS=Chromatium vinosum GN=phbA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.564e-13
Identity = 48/124 (38.71%), Postives = 72/124 (58.06%), Query Frame = 2
Query:  212 DDVVIVAAYRTAICKGKRGGFKDTL-ADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNS 580
            +++VIV A R+AI  G  GG   +L A ++   VLK ++ +T L P ++ ++++G VL  G  +    R    +AG P +VP  T+N+ C SGL+AV     AI  G  DI IA G ESM+ +S
Sbjct:    3 ENIVIVDAGRSAI--GTFGGSLSSLSATEIGTAVLKGLLARTGLAPEQIDEVILGQVLTAGVGQN-PARQTTLHAGLPHSVPAMTINKVCGSGLKAVHLAMQAIACGDADIVIAGGQESMSQSS 123          
BLAST of CK934347 vs. ExPASy Swiss-Prot
Match: FADA_ALISL (3-ketoacyl-CoA thiolase OS=Aliivibrio salmonicida (strain LFI1238) GN=fadA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.120e-12
Identity = 44/119 (36.97%), Postives = 67/119 (56.30%), Query Frame = 2
Query:  215 DVVIVAAYRTAICKGKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESM 568
            +VVIV   RT + + K G F+ T A+DL A ++K ++E+   ++P+++ DI  G V           R A+  AG P+++   TVNR C S +QA+ D + AI  G  DI I  G+E M
Sbjct:    3 NVVIVDCIRTPMGRSKNGVFRHTRAEDLSAHLMKGLLERNPNVDPNQIEDIYWGCVQQTLEQGFNIARNASLLAGLPKSIAATTVNRLCGSSMQALHDASRAIMVGDADICIIGGVEHM 121          
BLAST of CK934347 vs. ExPASy Swiss-Prot
Match: FADA_AERS4 (3-ketoacyl-CoA thiolase OS=Aeromonas salmonicida (strain A449) GN=fadA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.462e-12
Identity = 46/119 (38.66%), Postives = 66/119 (55.46%), Query Frame = 2
Query:  215 DVVIVAAYRTAICKGKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESM 568
            DVVIV   RT + + K G F++  A+DL A ++ +++ +   L+P+E+ DI  G V           R AA  AG P+ V   TVNR C S +QA+ D + AI+ G  DI I  G+E M
Sbjct:    3 DVVIVDCIRTPMGRSKGGAFRNVRAEDLSAHLMSSILLRNPNLDPNEIEDIYWGCVQQTLEQGFNIARNAALLAGIPKQVGAVTVNRLCGSSMQALHDASRAIQVGDGDIFIIGGVEHM 121          
BLAST of CK934347 vs. ExPASy Swiss-Prot
Match: FADA_VIBVY (3-ketoacyl-CoA thiolase OS=Vibrio vulnificus (strain YJ016) GN=fadA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.910e-12
Identity = 46/119 (38.66%), Postives = 65/119 (54.62%), Query Frame = 2
Query:  215 DVVIVAAYRTAICKGKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESM 568
            +VVIV   RT + + K G F+ T A+DL A ++K ++ +  ++NPSE+ DI  G V           R AA  AG P  +   TVNR C S +QA+ D A AI  G  +I +  G+E M
Sbjct:    3 NVVIVDCLRTPMGRSKGGAFRHTRAEDLSAHLMKGILARNPQVNPSEIEDIYWGCVQQTLEQGFNVARNAALLAGLPIEIGAVTVNRLCGSSMQALHDGARAIMTGDAEICLIGGVEHM 121          
BLAST of CK934347 vs. ExPASy Swiss-Prot
Match: FADA_VIBVU (3-ketoacyl-CoA thiolase OS=Vibrio vulnificus GN=fadA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.910e-12
Identity = 46/119 (38.66%), Postives = 65/119 (54.62%), Query Frame = 2
Query:  215 DVVIVAAYRTAICKGKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESM 568
            +VVIV   RT + + K G F+ T A+DL A ++K ++ +  ++NPSE+ DI  G V           R AA  AG P  +   TVNR C S +QA+ D A AI  G  +I +  G+E M
Sbjct:    3 NVVIVDCLRTPMGRSKGGAFRHTRAEDLSAHLMKGILARNPQVNPSEIEDIYWGCVQQTLEQGFNVARNAALLAGLPIEIGAVTVNRLCGSSMQALHDGARAIMTGDAEICLIGGVEHM 121          
The following BLAST results are available for this feature:
BLAST of CK934347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
FADA_SACD21.196e-1432.893-ketoacyl-CoA thiolase OS=Saccharophagus degradan... [more]
THIL_MYCLE1.727e-1341.88Probable acetyl-CoA acetyltransferase OS=Mycobacte... [more]
ATOB_PSEAE1.727e-1334.91Acetyl-CoA acetyltransferase OS=Pseudomonas aerugi... [more]
FADA_AERHH3.848e-1339.503-ketoacyl-CoA thiolase OS=Aeromonas hydrophila su... [more]
ATOB_ECOLI5.026e-1335.98Acetyl-CoA acetyltransferase OS=Escherichia coli (... [more]
THIL_CHRVI6.564e-1338.71Acetyl-CoA acetyltransferase OS=Chromatium vinosum... [more]
FADA_ALISL1.120e-1236.973-ketoacyl-CoA thiolase OS=Aliivibrio salmonicida ... [more]
FADA_AERS41.462e-1238.663-ketoacyl-CoA thiolase OS=Aeromonas salmonicida (... [more]
FADA_VIBVY1.910e-1238.663-ketoacyl-CoA thiolase OS=Vibrio vulnificus (stra... [more]
FADA_VIBVU1.910e-1238.663-ketoacyl-CoA thiolase OS=Vibrio vulnificus GN=fa... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004260_B08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIIF_B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934347 ID=CK934347; Name=CK934347; organism=Citrus sinensis; type=EST; length=682bp
CAAGTCATCCNNNGGTTCTCGATTCATCAGAACTCAAAAGCTTTCCATTG
ACACCTGAGAGTGAGAGATGGAGAAAGCTCTTCACAGACAGAGAATTCTG
CTTCAACATCTTCAACCTTCTTCTTCCCAAACCAGTGACTCGCCGGCTAT
TTCTGCTTCGATTTGTTCGGCTGGTGAGGCTGCAGGGTACCATAGGAAGC
CTGCTTTTGATGATGATGTCGTCATTGTGGCTGCATACCGTACTGCAATT
TGCAAGGGGAAACGGGGAGGCTTCAAGGATACTCTTGCCGATGATCTGCT
TGCACCTGTTCTAAAGGCAGTGATAGAGAAAACGAGGTTGAATCCCAGTG
AAGTAGGGGATATAGTTGTTGGTACAGTCTTGGCACCCGGCTCAACAAGA
GCCATGGAGTGTAGGATGGCAGCGTTCTATGCTGGTTTCCCTGAAACGGT
GCCCCTCAGAACTGTCAACAGGCAGTGTTCATCTGGCTTGCAGGCGGTTG
CTGATGTTGCAACAGCTATAAAAGCTGGATTGTATGACATTGGTATTGCT
GCTGGATTGGAAAGCATGACAGTGAATTCTATTAGCGTTGTTGGCCAAGT
TAACCCCAAAGTGGAGATCTTTACTCAAGCTCGGGACTGTCTGCTTCCTA
TGGGTATCACTTCTGAAAATGTTGCACANNGA
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