CK934347

Overview
NameCK934347
Unique NameCK934347
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7887 contig Csv1_Contig7887:101..782. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934347 vs. ExPASy Swiss-Prot
Match: FADA_SERP5 (3-ketoacyl-CoA thiolase OS=Serratia proteamaculans (strain 568) GN=fadA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.557e-12
Identity = 44/120 (36.67%), Postives = 65/120 (54.17%), Query Frame = 2
Query:  212 DDVVIVAAYRTAICKGKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESM 568
            ++VVIV A RT + + K G F+   A+DL A +++AV+ +   L+ +E+ DI  G V           R A+  A  P +VP  TVNR C S +QA+ D A AI  G   + +  G+E M
Sbjct:    2 ENVVIVDAVRTPMGRSKGGAFRQVRAEDLSAHLMRAVLSRNPSLDAAEIDDIYWGCVQQTLEQGFNIARNASLLAEIPHSVPAVTVNRLCGSSMQALHDAARAIMVGDAHVSLIGGVEHM 121          
BLAST of CK934347 vs. ExPASy Swiss-Prot
Match: FADA_PSYCK (3-ketoacyl-CoA thiolase OS=Psychrobacter cryohalolentis (strain K5) GN=fadA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.557e-12
Identity = 48/151 (31.79%), Postives = 74/151 (49.01%), Query Frame = 2
Query:  215 DVVIVAAYRTAICKGKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSE 667
            DVVIV   R+A+ K K G F+   AD + A +++A++E+   +P +V DI+ G V           R     AG P+T   +T+NR C S +QA+   A  I  G  D+ I  G+E M    + ++  V+   E           MG+T+E
Sbjct:    8 DVVIVDGVRSAMGKTKNGMFRHVRADSMSAELVRALVERNDFDPRDVEDIIWGCVNQTLEQGLNIGRNIGLLAGIPKTAGGQTINRLCGSSMQALHTAAAQIMTGQGDVFIIGGVEHM--GHVGMMHGVDLNPEASKHYAKASNMMGLTAE 156          
BLAST of CK934347 vs. ExPASy Swiss-Prot
Match: FADA_PSYA2 (3-ketoacyl-CoA thiolase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=fadA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.557e-12
Identity = 43/118 (36.44%), Postives = 62/118 (52.54%), Query Frame = 2
Query:  215 DVVIVAAYRTAICKGKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESM 568
            DVVIV   R+A+ K K G F+   AD + A +++A++E+   +P +V DI+ G V           R     AG P+T   +TVNR C S +QA+   A  I  G  D+ I  G+E M
Sbjct:    8 DVVIVDGVRSAMGKTKNGMFRHVRADSMSAELVRALVERNDFDPRDVEDIIWGCVNQTLEQGLNIGRNIGLLAGIPKTAGGQTVNRLCGSSMQALHTAAAQIMTGQGDVFIIGGVEHM 125          
BLAST of CK934347 vs. ExPASy Swiss-Prot
Match: FADA_PHOPR (3-ketoacyl-CoA thiolase OS=Photobacterium profundum GN=fadA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.557e-12
Identity = 44/120 (36.67%), Postives = 64/120 (53.33%), Query Frame = 2
Query:  212 DDVVIVAAYRTAICKGKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESM 568
            ++VVIV   RT + + K G F++  A+DL A ++K +I +  +L+P+ + DI  G V           R A+  AG P TV   TVNR C S +QA+ D   AI  G  +  I  G+E M
Sbjct:    2 NNVVIVDCIRTPMGRSKAGAFRNVRAEDLSAHLMKGLISRNPQLDPNSIEDIYWGCVQQTLEQGFNVARNASLLAGIPHTVAATTVNRLCGSSMQALHDATRAIMVGDAETCIIGGVEHM 121          
BLAST of CK934347 vs. ExPASy Swiss-Prot
Match: FADA_ACIBT (3-ketoacyl-CoA thiolase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=fadA PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.557e-12
Identity = 44/118 (37.29%), Postives = 63/118 (53.39%), Query Frame = 2
Query:  215 DVVIVAAYRTAICKGKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESM 568
            DVVIV   R+A+ K K G F++  AD L A +++A+I + + + +EV D++ G V           R     AG P+TV  +TVNR C S +QA+   A  I     DI I  G+E M
Sbjct:    8 DVVIVDGVRSAMGKSKNGMFRNVRADSLSAELVRALIARNQFDVNEVEDLIWGCVNQTLEQGMNIGRNIGLLAGLPKTVAGQTVNRLCGSSMQAIHTAAAQIATNQGDIFIIGGVEHM 125          
BLAST of CK934347 vs. ExPASy Swiss-Prot
Match: CATF_ACIAD (Beta-ketoadipyl-CoA thiolase OS=Acinetobacter sp. (strain ADP1) GN=catF PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.557e-12
Identity = 49/117 (41.88%), Postives = 63/117 (53.85%), Query Frame = 2
Query:  224 IVAAYRTAICKGKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT 571
            IV A RT   +   GG     ADDL A  + A+IE+   +N ++V D++ G     G       RM+A  AG P  VP  TVNR C S L A+A  A AIKAG   + IA G+ESM+
Sbjct:    6 IVDAIRTPFGR-YAGGLAAVRADDLGAIPIAALIERNPSVNWAQVDDVIYGCANQAGEDNRNVGRMSALLAGLPVEVPATTVNRLCGSSLDAIAMAARAIKAGEAHLIIAGGVESMS 121          
BLAST of CK934347 vs. ExPASy Swiss-Prot
Match: THIL_RHIME (Acetyl-CoA acetyltransferase OS=Rhizobium meliloti GN=phbA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.257e-12
Identity = 57/163 (34.97%), Postives = 85/163 (52.15%), Query Frame = 2
Query:  218 VVIVAAYRTAICKGKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTV--NSISVVG--QVNPKVEIFTQARDCLLP------MGITSENVA 676
            +VI +A RTA+     G F +TLA +L A  +KAV+E+  +   EV ++++G VL P        R AA  AG P+      +N+ C SGL+AVA     I  G   + +A G+ESM++  +   + G  ++     I T  +D L        MGIT+ENVA
Sbjct:    6 IVIASAARTAV-GSFNGAFGNTLAHELGAAAIKAVLERAGVEAGEVDEVILGQVL-PAGEGQNPARQAAMKAGLPQEKTAWGMNQLCGSGLRAVALGMQQIATGDAKVIVAGGMESMSMAPHCAHLRGGVKMGDYKMIDTMIKDGLTDAFYGYHMGITAENVA 166          
BLAST of CK934347 vs. ExPASy Swiss-Prot
Match: PAAJ_ECOLI (Beta-ketoadipyl-CoA thiolase OS=Escherichia coli (strain K12) GN=paaJ PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.257e-12
Identity = 44/116 (37.93%), Postives = 60/116 (51.72%), Query Frame = 2
Query:  248 ICKGKR-------GGFKDTLADDLLA-PVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT 571
            IC G R       G      ADDL A P+ + ++   RL+   + D+++G     G       RMA   AG P++V   T+NR C SGL A+   A AIKAG  D+ IA G+ESM+
Sbjct:    6 ICDGIRTPIGRYGGALSSVRADDLAAIPLRELLVRNPRLDAECIDDVILGCANQAGEDNRNVARMATLLAGLPQSVSGTTINRLCGSGLDALGFAARAIKAGDGDLLIAGGVESMS 121          
BLAST of CK934347 vs. ExPASy Swiss-Prot
Match: FADA_ACIBY (3-ketoacyl-CoA thiolase OS=Acinetobacter baumannii (strain AYE) GN=fadA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.257e-12
Identity = 43/118 (36.44%), Postives = 63/118 (53.39%), Query Frame = 2
Query:  215 DVVIVAAYRTAICKGKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESM 568
            DVVIV   R+A+ K K G F++  AD L A +++A++ + + + +EV D++ G V           R     AG P+TV  +TVNR C S +QA+   A  I     DI I  G+E M
Sbjct:    8 DVVIVDGVRSAMGKSKNGMFRNVRADSLSAELVRALVARNQFDVNEVEDLIWGCVNQTLEQGMNIGRNIGLLAGLPKTVAGQTVNRLCGSSMQAIHTAAAQIATNQGDIFIIGGVEHM 125          
BLAST of CK934347 vs. ExPASy Swiss-Prot
Match: FADA_ACIBS (3-ketoacyl-CoA thiolase OS=Acinetobacter baumannii (strain SDF) GN=fadA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.257e-12
Identity = 43/118 (36.44%), Postives = 63/118 (53.39%), Query Frame = 2
Query:  215 DVVIVAAYRTAICKGKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESM 568
            DVVIV   R+A+ K K G F++  AD L A +++A++ + + + +EV D++ G V           R     AG P+TV  +TVNR C S +QA+   A  I     DI I  G+E M
Sbjct:    8 DVVIVDGVRSAMGKSKNGMFRNVRADSLSAELVRALVARNQFDVNEVEDLIWGCVNQTLEQGMNIGRNIGLLAGLPKTVAGQTVNRLCGSSMQAIHTAAAQIATNQGDIFIIGGVEHM 125          
The following BLAST results are available for this feature:
BLAST of CK934347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
FADA_SERP55.557e-1236.673-ketoacyl-CoA thiolase OS=Serratia proteamaculans... [more]
FADA_PSYCK5.557e-1231.793-ketoacyl-CoA thiolase OS=Psychrobacter cryohalol... [more]
FADA_PSYA25.557e-1236.443-ketoacyl-CoA thiolase OS=Psychrobacter arcticus ... [more]
FADA_PHOPR5.557e-1236.673-ketoacyl-CoA thiolase OS=Photobacterium profundu... [more]
FADA_ACIBT5.557e-1237.293-ketoacyl-CoA thiolase OS=Acinetobacter baumannii... [more]
CATF_ACIAD5.557e-1241.88Beta-ketoadipyl-CoA thiolase OS=Acinetobacter sp. ... [more]
THIL_RHIME7.257e-1234.97Acetyl-CoA acetyltransferase OS=Rhizobium meliloti... [more]
PAAJ_ECOLI7.257e-1237.93Beta-ketoadipyl-CoA thiolase OS=Escherichia coli (... [more]
FADA_ACIBY7.257e-1236.443-ketoacyl-CoA thiolase OS=Acinetobacter baumannii... [more]
FADA_ACIBS7.257e-1236.443-ketoacyl-CoA thiolase OS=Acinetobacter baumannii... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004260_B08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIIF_B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934347 ID=CK934347; Name=CK934347; organism=Citrus sinensis; type=EST; length=682bp
CAAGTCATCCNNNGGTTCTCGATTCATCAGAACTCAAAAGCTTTCCATTG
ACACCTGAGAGTGAGAGATGGAGAAAGCTCTTCACAGACAGAGAATTCTG
CTTCAACATCTTCAACCTTCTTCTTCCCAAACCAGTGACTCGCCGGCTAT
TTCTGCTTCGATTTGTTCGGCTGGTGAGGCTGCAGGGTACCATAGGAAGC
CTGCTTTTGATGATGATGTCGTCATTGTGGCTGCATACCGTACTGCAATT
TGCAAGGGGAAACGGGGAGGCTTCAAGGATACTCTTGCCGATGATCTGCT
TGCACCTGTTCTAAAGGCAGTGATAGAGAAAACGAGGTTGAATCCCAGTG
AAGTAGGGGATATAGTTGTTGGTACAGTCTTGGCACCCGGCTCAACAAGA
GCCATGGAGTGTAGGATGGCAGCGTTCTATGCTGGTTTCCCTGAAACGGT
GCCCCTCAGAACTGTCAACAGGCAGTGTTCATCTGGCTTGCAGGCGGTTG
CTGATGTTGCAACAGCTATAAAAGCTGGATTGTATGACATTGGTATTGCT
GCTGGATTGGAAAGCATGACAGTGAATTCTATTAGCGTTGTTGGCCAAGT
TAACCCCAAAGTGGAGATCTTTACTCAAGCTCGGGACTGTCTGCTTCCTA
TGGGTATCACTTCTGAAAATGTTGCACANNGA
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