CK934347

Overview
NameCK934347
Unique NameCK934347
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934347 vs. ExPASy Swiss-Prot
Match: FADA_ACIBC (3-ketoacyl-CoA thiolase OS=Acinetobacter baumannii (strain ACICU) GN=fadA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.257e-12
Identity = 43/118 (36.44%), Postives = 63/118 (53.39%), Query Frame = 2
Query:  215 DVVIVAAYRTAICKGKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESM 568
            DVVIV   R+A+ K K G F++  AD L A +++A++ + + + +EV D++ G V           R     AG P+TV  +TVNR C S +QA+   A  I     DI I  G+E M
Sbjct:    8 DVVIVDGVRSAMGKSKNGMFRNVRADSLSAELVRALVARNQFDVNEVEDLIWGCVNQTLEQGMNIGRNIGLLAGLPKTVAGQTVNRLCGSSMQAIHTAAAQIATNQGDIFIIGGVEHM 125          
BLAST of CK934347 vs. ExPASy Swiss-Prot
Match: FADA_ACIB5 (3-ketoacyl-CoA thiolase OS=Acinetobacter baumannii (strain AB0057) GN=fadA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.257e-12
Identity = 43/118 (36.44%), Postives = 63/118 (53.39%), Query Frame = 2
Query:  215 DVVIVAAYRTAICKGKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESM 568
            DVVIV   R+A+ K K G F++  AD L A +++A++ + + + +EV D++ G V           R     AG P+TV  +TVNR C S +QA+   A  I     DI I  G+E M
Sbjct:    8 DVVIVDGVRSAMGKSKNGMFRNVRADSLSAELVRALVARNQFDVNEVEDLIWGCVNQTLEQGMNIGRNIGLLAGLPKTVAGQTVNRLCGSSMQAIHTAAAQIATNQGDIFIIGGVEHM 125          
BLAST of CK934347 vs. ExPASy Swiss-Prot
Match: FADA_ACIB3 (3-ketoacyl-CoA thiolase OS=Acinetobacter baumannii (strain AB307-0294) GN=fadA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.257e-12
Identity = 43/118 (36.44%), Postives = 63/118 (53.39%), Query Frame = 2
Query:  215 DVVIVAAYRTAICKGKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESM 568
            DVVIV   R+A+ K K G F++  AD L A +++A++ + + + +EV D++ G V           R     AG P+TV  +TVNR C S +QA+   A  I     DI I  G+E M
Sbjct:    8 DVVIVDGVRSAMGKSKNGMFRNVRADSLSAELVRALVARNQFDVNEVEDLIWGCVNQTLEQGMNIGRNIGLLAGLPKTVAGQTVNRLCGSSMQAIHTAAAQIATNQGDIFIIGGVEHM 125          
BLAST of CK934347 vs. ExPASy Swiss-Prot
Match: PAAJ_ECOLX (Beta-ketoadipyl-CoA thiolase OS=Escherichia coli GN=paaJ PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.479e-12
Identity = 44/116 (37.93%), Postives = 60/116 (51.72%), Query Frame = 2
Query:  248 ICKGKR-------GGFKDTLADDLLA-PVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT 571
            IC G R       G      ADDL A P+ + ++   RL+   + D+++G     G       RMA   AG P++V   T+NR C SGL A+   A AIKAG  D+ IA G+ESM+
Sbjct:    6 ICDGIRTPIGRYGGALSGVRADDLAAIPLRELLVRNPRLDAECIDDVILGCANQAGEDNRNVARMATLLAGLPQSVSGTTINRLCGSGLDALGFAARAIKAGDGDLLIAGGVESMS 121          
BLAST of CK934347 vs. ExPASy Swiss-Prot
Match: FADA_YERE8 (3-ketoacyl-CoA thiolase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=fadA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.479e-12
Identity = 43/120 (35.83%), Postives = 64/120 (53.33%), Query Frame = 2
Query:  212 DDVVIVAAYRTAICKGKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESM 568
            ++VVI+ A RT + + K G F+   A+DL A +++ V+ +   LN +E+ DI  G V           R A+  A  P +VP  TVNR C S +QA+ D A AI  G   + +  G+E M
Sbjct:    2 ENVVIIDAVRTPMGRSKGGAFRQVRAEDLSAHLMREVLSRNPELNAAEIDDIYWGCVQQTLEQGFNIARNASLLAEIPHSVPAVTVNRLCGSSMQALHDGARAIMVGDAQVSLIGGVEHM 121          
BLAST of CK934347 vs. ExPASy Swiss-Prot
Match: FADA_VIBPA (3-ketoacyl-CoA thiolase OS=Vibrio parahaemolyticus GN=fadA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.479e-12
Identity = 44/119 (36.97%), Postives = 64/119 (53.78%), Query Frame = 2
Query:  215 DVVIVAAYRTAICKGKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESM 568
            +VV+V   RT + + K G F+ T A+DL A ++K ++ +  ++NPSE+ DI  G V           R AA  AG P  +   TVNR C S +QA+ D   AI  G  +I +  G+E M
Sbjct:    7 NVVVVDCLRTPMGRSKGGAFRHTRAEDLSAHLMKGILARNPQVNPSEIEDIYWGCVQQTLEQGFNIARNAALLAGLPIEIGAVTVNRLCGSSMQALHDGTRAIMTGDAEICLIGGVEHM 125          
BLAST of CK934347 vs. ExPASy Swiss-Prot
Match: FADA_VIBF1 (3-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=fadA PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 9.479e-12
Identity = 42/119 (35.29%), Postives = 67/119 (56.30%), Query Frame = 2
Query:  215 DVVIVAAYRTAICKGKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESM 568
            +VVIV   RT + + K G F+ T A+DL A ++K ++++   ++P+++ DI  G V           R +A  AG P+++   TVNR C S +QA+ D + AI  G  +I I  G+E M
Sbjct:    3 NVVIVDCIRTPMGRSKNGVFRHTRAEDLSAHLMKGLLKRNPSVDPNDIEDIYWGCVQQTLEQGFNIARNSALLAGLPQSIAATTVNRLCGSSMQALHDASRAIMVGDAEICIIGGVEHM 121          
BLAST of CK934347 vs. ExPASy Swiss-Prot
Match: FADA_PSEFR (3-ketoacyl-CoA thiolase OS=Pseudomonas fragi GN=fadA PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 9.479e-12
Identity = 48/152 (31.58%), Postives = 79/152 (51.97%), Query Frame = 2
Query:  215 DVVIVAAYRTAICKGKRGGFKDTLADDLLAPVLKAVIEK-TRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSE 667
            DVVIV   RT + + K G  ++T A+D+ A ++  V+E+ ++++P EV D++ G V           RMA+     P T   +TV+R C S + A+   A AI  G  D+ +  G+E M    +S++  V+P   +   A      MG+T+E
Sbjct:    7 DVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKVLERNSKVDPGEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHM--GHVSMMHGVDPNPHMSLYAAKASGMMGLTAE 156          
BLAST of CK934347 vs. ExPASy Swiss-Prot
Match: FADA_ERWCT (3-ketoacyl-CoA thiolase OS=Erwinia carotovora subsp. atroseptica GN=fadA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.479e-12
Identity = 44/120 (36.67%), Postives = 65/120 (54.17%), Query Frame = 2
Query:  212 DDVVIVAAYRTAICKGKRGGFKDTLADDLLAPVLKAVIEK-TRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESM 568
            + VVIV A RT + + K G F+   A+DL A ++++++ + T L+  E+ DI  G V           R AA  A  P +VP  TVNR C S +QA+ D A AI  G  ++ +  G+E M
Sbjct:    2 EKVVIVDAVRTPMGRSKGGAFRQVRAEDLSAHLMRSLLSRNTALDAREIDDIYWGCVQQALEQGFNVARNAALLAEIPVSVPATTVNRLCGSSMQALHDAARAIMVGDANVCLIGGVEHM 121          
BLAST of CK934347 vs. ExPASy Swiss-Prot
Match: PCAF_PSEPU (Beta-ketoadipyl-CoA thiolase OS=Pseudomonas putida GN=pcaF PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.238e-11
Identity = 49/124 (39.52%), Postives = 66/124 (53.23%), Query Frame = 2
Query:  215 DVVIVAAYRTAICKGKRGG-FKDTLADDLLAPVLKAVIEKTRLNPS----EVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT 571
            DV I  A RT I  G+ GG      ADDL A  LKA+IE    NP+    +V ++  G     G       RMA   AG PE++P  T+NR C+SG+ A+     AI +G  ++ IA G+ESM+
Sbjct:    3 DVFICDAIRTPI--GRFGGALAGVRADDLAAVPLKALIEP---NPAVQWDQVDEVFFGCANQAGEDNRNVARMALLLAGLPESIPGVTLNRLCASGMDAIGTAFRAIASGEMELAIAGGVESMS 121          
The following BLAST results are available for this feature:
BLAST of CK934347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
FADA_ACIBC7.257e-1236.443-ketoacyl-CoA thiolase OS=Acinetobacter baumannii... [more]
FADA_ACIB57.257e-1236.443-ketoacyl-CoA thiolase OS=Acinetobacter baumannii... [more]
FADA_ACIB37.257e-1236.443-ketoacyl-CoA thiolase OS=Acinetobacter baumannii... [more]
PAAJ_ECOLX9.479e-1237.93Beta-ketoadipyl-CoA thiolase OS=Escherichia coli G... [more]
FADA_YERE89.479e-1235.833-ketoacyl-CoA thiolase OS=Yersinia enterocolitica... [more]
FADA_VIBPA9.479e-1236.973-ketoacyl-CoA thiolase OS=Vibrio parahaemolyticus... [more]
FADA_VIBF19.479e-1235.293-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain... [more]
FADA_PSEFR9.479e-1231.583-ketoacyl-CoA thiolase OS=Pseudomonas fragi GN=fa... [more]
FADA_ERWCT9.479e-1236.673-ketoacyl-CoA thiolase OS=Erwinia carotovora subs... [more]
PCAF_PSEPU1.238e-1139.52Beta-ketoadipyl-CoA thiolase OS=Pseudomonas putida... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004260_B08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIIF_B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934347 ID=CK934347; Name=CK934347; organism=Citrus sinensis; type=EST; length=682bp
CAAGTCATCCNNNGGTTCTCGATTCATCAGAACTCAAAAGCTTTCCATTG
ACACCTGAGAGTGAGAGATGGAGAAAGCTCTTCACAGACAGAGAATTCTG
CTTCAACATCTTCAACCTTCTTCTTCCCAAACCAGTGACTCGCCGGCTAT
TTCTGCTTCGATTTGTTCGGCTGGTGAGGCTGCAGGGTACCATAGGAAGC
CTGCTTTTGATGATGATGTCGTCATTGTGGCTGCATACCGTACTGCAATT
TGCAAGGGGAAACGGGGAGGCTTCAAGGATACTCTTGCCGATGATCTGCT
TGCACCTGTTCTAAAGGCAGTGATAGAGAAAACGAGGTTGAATCCCAGTG
AAGTAGGGGATATAGTTGTTGGTACAGTCTTGGCACCCGGCTCAACAAGA
GCCATGGAGTGTAGGATGGCAGCGTTCTATGCTGGTTTCCCTGAAACGGT
GCCCCTCAGAACTGTCAACAGGCAGTGTTCATCTGGCTTGCAGGCGGTTG
CTGATGTTGCAACAGCTATAAAAGCTGGATTGTATGACATTGGTATTGCT
GCTGGATTGGAAAGCATGACAGTGAATTCTATTAGCGTTGTTGGCCAAGT
TAACCCCAAAGTGGAGATCTTTACTCAAGCTCGGGACTGTCTGCTTCCTA
TGGGTATCACTTCTGAAAATGTTGCACANNGA
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