CK934347

Overview
NameCK934347
Unique NameCK934347
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934347 vs. ExPASy Swiss-Prot
Match: FADA_VIBCH (3-ketoacyl-CoA thiolase OS=Vibrio cholerae GN=fadA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.238e-11
Identity = 44/118 (37.29%), Postives = 62/118 (52.54%), Query Frame = 2
Query:  218 VVIVAAYRTAICKGKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESM 568
            VVIV   RT + + K G F+   A+DL A ++K ++ +  ++NP E+ DI  G V           R AA  AG P  +   TVNR C S +QA+ D A AI  G  +I +  G+E M
Sbjct:    4 VVIVDCLRTPMGRSKGGAFRHQRAEDLSAHLMKGILARNPQVNPKEIEDIYWGCVQQTLEQGFNVARNAALLAGLPIEIGAVTVNRLCGSSMQALHDAARAIMVGDAEICLVGGVEHM 121          
BLAST of CK934347 vs. ExPASy Swiss-Prot
Match: FADA_VIBC3 (3-ketoacyl-CoA thiolase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=fadA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.238e-11
Identity = 44/118 (37.29%), Postives = 62/118 (52.54%), Query Frame = 2
Query:  218 VVIVAAYRTAICKGKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESM 568
            VVIV   RT + + K G F+   A+DL A ++K ++ +  ++NP E+ DI  G V           R AA  AG P  +   TVNR C S +QA+ D A AI  G  +I +  G+E M
Sbjct:    4 VVIVDCLRTPMGRSKGGAFRHQRAEDLSAHLMKGILARNPQVNPKEIEDIYWGCVQQTLEQGFNVARNAALLAGLPIEIGAVTVNRLCGSSMQALHDAARAIMVGDAEICLVGGVEHM 121          
BLAST of CK934347 vs. ExPASy Swiss-Prot
Match: FADA_PSEPF (3-ketoacyl-CoA thiolase OS=Pseudomonas fluorescens (strain Pf0-1) GN=fadA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.238e-11
Identity = 48/152 (31.58%), Postives = 80/152 (52.63%), Query Frame = 2
Query:  215 DVVIVAAYRTAICKGKRGGFKDTLADDLLAPVLKAVIEK-TRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSE 667
            DVVIV   RT + + K G  ++T A+D+ A ++  ++E+ T+++P+EV D++ G V           RMA+     P T   +TV+R C S + A+   A AI  G  D+ +  G+E M    +S++  V+P   +   A      MG+T+E
Sbjct:    7 DVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKLLERNTKVDPAEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAGQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHM--GHVSMMHGVDPNPHMSLYAAKASGMMGLTAE 156          
BLAST of CK934347 vs. ExPASy Swiss-Prot
Match: FADA_PSEE4 (3-ketoacyl-CoA thiolase OS=Pseudomonas entomophila (strain L48) GN=fadA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.238e-11
Identity = 47/152 (30.92%), Postives = 78/152 (51.32%), Query Frame = 2
Query:  215 DVVIVAAYRTAICKGKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSE 667
            DVVIV   RT + + K G  ++T A+D+ A ++  ++E+  +++P EV D++ G V           RMA+     P T   +TV+R C S + A+   A AI  G  D+ +  G+E M    +S++  V+P   +   A      MG+T+E
Sbjct:    7 DVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKLLERNDKIDPKEVEDVIWGCVNQTMEQGWNIARMASLMTPIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVIGGVEHM--GHVSMMHGVDPNPHLSLHAAKASGMMGLTAE 156          
BLAST of CK934347 vs. ExPASy Swiss-Prot
Match: THIL_MYCTU (Probable acetyl-CoA acetyltransferase OS=Mycobacterium tuberculosis GN=fadA4 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.617e-11
Identity = 46/117 (39.32%), Postives = 64/117 (54.70%), Query Frame = 2
Query:  221 VIVAAYRTAICKGKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT 571
            +IVA  RT I K   G  KD  A +L A  +K  +EK  +  S V  +++G VL  G+ + M  R AA  AG    VP  T+N+ C SG+ A+A     I+A  +D+ +A G ESMT
Sbjct:    1 MIVAGARTPIGK-LMGSLKDFSASELGAIAIKGALEKANVPASLVEYVIMGQVLTAGAGQ-MPARQAAVAAGIGWDVPALTINKMCLSGIDAIALADQLIRAREFDVVVAGGQESMT 115          
BLAST of CK934347 vs. ExPASy Swiss-Prot
Match: THIL_MYCBO (Probable acetyl-CoA acetyltransferase OS=Mycobacterium bovis GN=fadA4 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.617e-11
Identity = 46/117 (39.32%), Postives = 64/117 (54.70%), Query Frame = 2
Query:  221 VIVAAYRTAICKGKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT 571
            +IVA  RT I K   G  KD  A +L A  +K  +EK  +  S V  +++G VL  G+ + M  R AA  AG    VP  T+N+ C SG+ A+A     I+A  +D+ +A G ESMT
Sbjct:    1 MIVAGARTPIGK-LMGSLKDFSASELGAIAIKGALEKANVPASLVEYVIMGQVLTAGAGQ-MPARQAAVAAGIGWDVPALTINKMCLSGIDAIALADQLIRAREFDVVVAGGQESMT 115          
BLAST of CK934347 vs. ExPASy Swiss-Prot
Match: FADA_VIBFM (3-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain MJ11) GN=fadA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.617e-11
Identity = 42/119 (35.29%), Postives = 67/119 (56.30%), Query Frame = 2
Query:  215 DVVIVAAYRTAICKGKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESM 568
            +VVIV   RT + + K G F+ T A+DL A ++K ++++   ++P+++ DI  G V           R +A  AG P+++   TVNR C S +QA+ D + AI  G  +I I  G+E M
Sbjct:    3 NVVIVDCIRTPMGRSKNGVFRYTRAEDLSAHLMKGLLKRNPSVDPNDIEDIYWGCVQQTLEQGFNIARNSALLAGLPQSIAATTVNRLCGSSMQALHDASRAIMVGDAEICIIGGVEHM 121          
BLAST of CK934347 vs. ExPASy Swiss-Prot
Match: FADA_PSEPK (3-ketoacyl-CoA thiolase OS=Pseudomonas putida (strain KT2440) GN=fadA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.617e-11
Identity = 47/152 (30.92%), Postives = 78/152 (51.32%), Query Frame = 2
Query:  215 DVVIVAAYRTAICKGKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSE 667
            DVVIV   RT + + K G  ++T A+D+ A ++  ++E+  +++P EV D++ G V           RMA+     P T   +TV+R C S + A+   A AI  G  D+ +  G+E M    +S++  V+P   +   A      MG+T+E
Sbjct:    7 DVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKLLERNGKVDPKEVEDVIWGCVNQTLEQGWNIARMASLMTPIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHM--GHVSMMHGVDPNPHLSLHAAKASGMMGLTAE 156          
BLAST of CK934347 vs. ExPASy Swiss-Prot
Match: FADA_PSEP1 (3-ketoacyl-CoA thiolase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=fadA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.617e-11
Identity = 47/152 (30.92%), Postives = 78/152 (51.32%), Query Frame = 2
Query:  215 DVVIVAAYRTAICKGKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSE 667
            DVVIV   RT + + K G  ++T A+D+ A ++  ++E+  +++P EV D++ G V           RMA+     P T   +TV+R C S + A+   A AI  G  D+ +  G+E M    +S++  V+P   +   A      MG+T+E
Sbjct:    7 DVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKLLERNGKVDPKEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHM--GHVSMMHGVDPNPHLSLHAAKASGMMGLTAE 156          
BLAST of CK934347 vs. ExPASy Swiss-Prot
Match: FADA_PSEOL (3-ketoacyl-CoA thiolase OS=Pseudomonas oleovorans GN=fadA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.617e-11
Identity = 47/152 (30.92%), Postives = 78/152 (51.32%), Query Frame = 2
Query:  215 DVVIVAAYRTAICKGKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSE 667
            DVVIV   RT + + K G  ++T A+D+ A ++  ++E+  +++P EV D++ G V           RMA+     P T   +TV+R C S + A+   A AI  G  D+ +  G+E M    +S++  V+P   +   A      MG+T+E
Sbjct:    7 DVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKLLERNDKVDPKEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHM--GHVSMMHGVDPNPHLSLHAAKASGMMGLTAE 156          
The following BLAST results are available for this feature:
BLAST of CK934347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
FADA_VIBCH1.238e-1137.293-ketoacyl-CoA thiolase OS=Vibrio cholerae GN=fadA... [more]
FADA_VIBC31.238e-1137.293-ketoacyl-CoA thiolase OS=Vibrio cholerae serotyp... [more]
FADA_PSEPF1.238e-1131.583-ketoacyl-CoA thiolase OS=Pseudomonas fluorescens... [more]
FADA_PSEE41.238e-1130.923-ketoacyl-CoA thiolase OS=Pseudomonas entomophila... [more]
THIL_MYCTU1.617e-1139.32Probable acetyl-CoA acetyltransferase OS=Mycobacte... [more]
THIL_MYCBO1.617e-1139.32Probable acetyl-CoA acetyltransferase OS=Mycobacte... [more]
FADA_VIBFM1.617e-1135.293-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain... [more]
FADA_PSEPK1.617e-1130.923-ketoacyl-CoA thiolase OS=Pseudomonas putida (str... [more]
FADA_PSEP11.617e-1130.923-ketoacyl-CoA thiolase OS=Pseudomonas putida (str... [more]
FADA_PSEOL1.617e-1130.923-ketoacyl-CoA thiolase OS=Pseudomonas oleovorans ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004260_B08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIIF_B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934347 ID=CK934347; Name=CK934347; organism=Citrus sinensis; type=EST; length=682bp
CAAGTCATCCNNNGGTTCTCGATTCATCAGAACTCAAAAGCTTTCCATTG
ACACCTGAGAGTGAGAGATGGAGAAAGCTCTTCACAGACAGAGAATTCTG
CTTCAACATCTTCAACCTTCTTCTTCCCAAACCAGTGACTCGCCGGCTAT
TTCTGCTTCGATTTGTTCGGCTGGTGAGGCTGCAGGGTACCATAGGAAGC
CTGCTTTTGATGATGATGTCGTCATTGTGGCTGCATACCGTACTGCAATT
TGCAAGGGGAAACGGGGAGGCTTCAAGGATACTCTTGCCGATGATCTGCT
TGCACCTGTTCTAAAGGCAGTGATAGAGAAAACGAGGTTGAATCCCAGTG
AAGTAGGGGATATAGTTGTTGGTACAGTCTTGGCACCCGGCTCAACAAGA
GCCATGGAGTGTAGGATGGCAGCGTTCTATGCTGGTTTCCCTGAAACGGT
GCCCCTCAGAACTGTCAACAGGCAGTGTTCATCTGGCTTGCAGGCGGTTG
CTGATGTTGCAACAGCTATAAAAGCTGGATTGTATGACATTGGTATTGCT
GCTGGATTGGAAAGCATGACAGTGAATTCTATTAGCGTTGTTGGCCAAGT
TAACCCCAAAGTGGAGATCTTTACTCAAGCTCGGGACTGTCTGCTTCCTA
TGGGTATCACTTCTGAAAATGTTGCACANNGA
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