CK934347

Overview
NameCK934347
Unique NameCK934347
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7887 contig Csv1_Contig7887:101..782. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934347 vs. ExPASy Swiss-Prot
Match: FADA_PSYWF (3-ketoacyl-CoA thiolase OS=Psychrobacter sp. (strain PRwf-1) GN=fadA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.024e-11
Identity = 48/152 (31.58%), Postives = 77/152 (50.66%), Query Frame = 2
Query:  215 DVVIVAAYRTAICKGKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKV-EIFTQARDCLLPMGITSE 667
            DVVIV   RTA+ K K G F++  AD + A +++A++++   + +EV DI+ G V           R     A  P+T   +TVNR C S +QA+   A  I     D+ I  G+E M    +     +NP+  + + +A +    MG+T+E
Sbjct:    8 DVVIVDGVRTAMGKSKNGMFRNVRADSMSAELVRALVKRNDFDTNEVEDIIWGCVNQTLEQGMNIGRNIGLLADIPKTAGGQTVNRLCGSSMQALHTAAAQIMTNQGDVFIIGGVEHMGHVGMMHGIDINPEASKHYAKASNM---MGLTAE 156          
BLAST of CK934347 vs. ExPASy Swiss-Prot
Match: FADA_PSEU2 (3-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=fadA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.024e-11
Identity = 47/152 (30.92%), Postives = 78/152 (51.32%), Query Frame = 2
Query:  215 DVVIVAAYRTAICKGKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSE 667
            DVVIV   RT + + K G  ++T A+D+ A ++  ++E+  +++P+EV D++ G V           RMA+     P T   +TV+R C S + A+   A AI     D+ I  G+E M    +S++  V+P   +   A      MG+T+E
Sbjct:    7 DVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKLLERNNKVDPAEVEDVIWGCVNQTLEQGWNIARMASLLTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTNNGDVFIIGGVEHM--GHVSMMHGVDPNPHMSLHAAKASGMMGLTAE 156          
The following BLAST results are available for this feature:
BLAST of CK934347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
FADA_PSYWF8.024e-1131.583-ketoacyl-CoA thiolase OS=Psychrobacter sp. (stra... [more]
FADA_PSEU28.024e-1130.923-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004260_B08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIIF_B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934347 ID=CK934347; Name=CK934347; organism=Citrus sinensis; type=EST; length=682bp
CAAGTCATCCNNNGGTTCTCGATTCATCAGAACTCAAAAGCTTTCCATTG
ACACCTGAGAGTGAGAGATGGAGAAAGCTCTTCACAGACAGAGAATTCTG
CTTCAACATCTTCAACCTTCTTCTTCCCAAACCAGTGACTCGCCGGCTAT
TTCTGCTTCGATTTGTTCGGCTGGTGAGGCTGCAGGGTACCATAGGAAGC
CTGCTTTTGATGATGATGTCGTCATTGTGGCTGCATACCGTACTGCAATT
TGCAAGGGGAAACGGGGAGGCTTCAAGGATACTCTTGCCGATGATCTGCT
TGCACCTGTTCTAAAGGCAGTGATAGAGAAAACGAGGTTGAATCCCAGTG
AAGTAGGGGATATAGTTGTTGGTACAGTCTTGGCACCCGGCTCAACAAGA
GCCATGGAGTGTAGGATGGCAGCGTTCTATGCTGGTTTCCCTGAAACGGT
GCCCCTCAGAACTGTCAACAGGCAGTGTTCATCTGGCTTGCAGGCGGTTG
CTGATGTTGCAACAGCTATAAAAGCTGGATTGTATGACATTGGTATTGCT
GCTGGATTGGAAAGCATGACAGTGAATTCTATTAGCGTTGTTGGCCAAGT
TAACCCCAAAGTGGAGATCTTTACTCAAGCTCGGGACTGTCTGCTTCCTA
TGGGTATCACTTCTGAAAATGTTGCACANNGA
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