CK934348

Overview
NameCK934348
Unique NameCK934348
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934348_ssr634 microsatellite CK934348_ssr634:634..648. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8154 contig Csv1_Contig8154:353..1137. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934348 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.037e-24
Identity = 72/163 (44.17%), Postives = 95/163 (58.28%), Query Frame = 1
Query:  121 QRFRECELIHGRWVMLATLGALTVEWLT---GI-----TWQDAGKVELVEGS-SYLGQPLPF---SITTLIWIEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDP 555
            +++RE E+IH RW +L  LG LT E L+   G+      W  AG     EG   YLG P      +I   + ++V+++G IE  R         LDP   LYPG + FDPLGLA DP+  A L++ EIK+ RLAM +  GF VQA+VTGKGP+ N A HL+DP
Sbjct:   82 KKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDP---LYPG-ESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADP 240          
BLAST of CK934348 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.037e-24
Identity = 71/161 (44.10%), Postives = 93/161 (57.76%), Query Frame = 1
Query:  130 RECELIHGRWVMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 561
            RE E+IH RW ML  LG +  E L   G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R         +DP   LYPGG F DPLGLA DPE+ A L++ E+K+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:   94 RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAGGPLGEIVDP---LYPGGSF-DPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 250          
BLAST of CK934348 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 8.037e-24
Identity = 73/161 (45.34%), Postives = 93/161 (57.76%), Query Frame = 1
Query:  130 RECELIHGRWVMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 561
            RE E+IH RW ML  LG +  E L   G+      W  AG     EG   YLG P      ++  IW ++V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:   91 RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 247          
BLAST of CK934348 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 1.050e-23
Identity = 73/161 (45.34%), Postives = 93/161 (57.76%), Query Frame = 1
Query:  130 RECELIHGRWVMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 561
            RE E+IH RW ML  LG +  E L   G+      W  AG     EG   YLG P      ++  IW ++V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:   95 RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGAF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251          
BLAST of CK934348 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.371e-23
Identity = 72/161 (44.72%), Postives = 93/161 (57.76%), Query Frame = 1
Query:  130 RECELIHGRWVMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 561
            RE E+IH RW ML  LG +  E L+  G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ E+K+ RLAM +  GF VQA+VTGKGPL N A HLSDP++
Sbjct:   98 RELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVN 254          
BLAST of CK934348 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.371e-23
Identity = 70/161 (43.48%), Postives = 93/161 (57.76%), Query Frame = 1
Query:  124 RFRECELIHGRWVMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQRNSELDP----EKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 561
            R RE E+IH RW ML  LG +  E L   G+      W  AG     +G   YLG P      +++ I   +V+++G +E  R +   P    E  LYPGG F DPLGLA DPE  A L++ E+K+ RLAM +  GF VQA+VTGKGP+ N A HL+DP++
Sbjct:   94 RNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSF-DPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVN 253          
BLAST of CK934348 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.371e-23
Identity = 70/161 (43.48%), Postives = 93/161 (57.76%), Query Frame = 1
Query:  124 RFRECELIHGRWVMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQRNSELDP----EKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 561
            R RE E+IH RW ML  LG +  E L   G+      W  AG     +G   YLG P      +++ I   +V+++G +E  R +   P    E  LYPGG F DPLGLA DPE  A L++ E+K+ RLAM +  GF VQA+VTGKGP+ N A HL+DP++
Sbjct:   94 RNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSF-DPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVN 253          
BLAST of CK934348 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.054e-23
Identity = 71/161 (44.10%), Postives = 93/161 (57.76%), Query Frame = 1
Query:  130 RECELIHGRWVMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 561
            RE E+IH RW ML  LG +  E L+  G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ E+K+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:   99 RELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 255          
BLAST of CK934348 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.989e-23
Identity = 72/161 (44.72%), Postives = 92/161 (57.14%), Query Frame = 1
Query:  130 RECELIHGRWVMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 561
            RE E+IH RW ML  LG +  E L   G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:   95 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251          
BLAST of CK934348 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.989e-23
Identity = 72/160 (45.00%), Postives = 92/160 (57.50%), Query Frame = 1
Query:  130 RECELIHGRWVMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 558
            RE E+IH RW ML  LG +  E L+  G+      W  AG     EG   YLG P      +++ I   +V+++G IE  R         LDP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGP+ N A H++DP+
Sbjct:   94 RELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGPLGEGLDP---LYPGGAF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPV 249          
The following BLAST results are available for this feature:
BLAST of CK934348 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
CB2_CHLMO8.037e-2444.17Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_APIGR8.037e-2444.10Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_ORYSJ8.037e-2445.34Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ORYSJ1.050e-2345.34Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB28_PEA1.371e-2344.72Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB22_ARATH1.371e-2343.48Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH1.371e-2343.48Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB22_PEA3.054e-2344.10Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB22_TOBAC3.989e-2344.72Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB21_LEMGI3.989e-2345.00Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004260_B09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIIF_B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934348 ID=CK934348; Name=CK934348; organism=Citrus sinensis; type=EST; length=785bp
GGGGACTCGTTGGACCAGAACTTGGCTAAGAACCCGGCTGGCGATATTAT
TGGGACGAGGATTGAGGCCTCTGACATGCAGTCCACGCCGCTTCAGCCGT
ACACTGAAGTCTTTGGTCTGCAGAGGTTCCGTGAGTGTGAGCTCATTCAT
GGACGTTGGGTCATGTTGGCTACTCTCGGTGCCCTCACTGTTGAGTGGCT
CACTGGGATTACTTGGCAAGACGCTGGCAAGGTAGAGTTAGTTGAAGGAT
CATCATACCTGGGGCAACCACTTCCATTCTCAATAACAACGTTGATATGG
ATTGAGGTTTTGGTAATTGGCTACATTGAGTTCCAAAGAAACTCAGAGCT
TGACCCGGAGAAGAGACTCTACCCGGGAGGAAAGTTTTTTGATCCTCTGG
GCTTGGCCGCTGACCCGGAAAAGAAAGCCACCCTTCAATTGGCAGAGATC
AAGCACGCCCGCCTTGCCATGGTTGCATTCCTTGGCTTCGCTGTCCAAGC
TGTTGTCACCGGAAAAGGCCCTCTCAACAACTGGGCTACCCACTTGAGCG
ATCCTCTTCACACAACCATTCTTGACACCTTCATCTCTTAGATTTCTGGT
GTAGCCTCCAGTACTTGGCAGTTGGCACTATTGTTATTATTATTATTATA
TGCGCCTATCTTGTAAAAAGAATTATAACATTTGACAGCTTAAGGGGAAT
GCTATGGCTTCATATTTTGAAGTCATTTCATCTTTGCAGAAAAAAAAAAA
AAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAA
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