CK934348
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK934348 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 8.886e-23 Identity = 71/161 (44.10%), Postives = 92/161 (57.14%), Query Frame = 1 Query: 130 RECELIHGRWVMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 561 RE E+IH RW ML LG + E L G+ W AG EG YLG P +++ I +V+++G IE R +DP LYPGG F DPLGLA DPE A +++ E+K+ RLAM + GF VQA+VTGKGPL N A HL+DP++ Sbjct: 95 RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVVDP---LYPGGTF-DPLGLADDPEAFADVKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251
BLAST of CK934348 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 8.886e-23 Identity = 70/162 (43.21%), Postives = 95/162 (58.64%), Query Frame = 1 Query: 124 RFRECELIHGRWVMLATLGALTVEWLT--GIT-----WQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 558 R RE E+IH RW ML LG + E L+ G+T W AG EG YLG P +++ I +V+++G++E R LD ++YPGG F DPLGLA DPE A L++ EIK+ RLAM + GF VQA+VTGKGP+ N + H++DP+ Sbjct: 65 RNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLD---KIYPGGAF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPV 222
BLAST of CK934348 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 8.886e-23 Identity = 72/161 (44.72%), Postives = 92/161 (57.14%), Query Frame = 1 Query: 130 RECELIHGRWVMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 561 RE E+IH RW ML LG + E L G+ W AG EG YLG P +++ I +V+++G +E R +DP LYPGG F DPLGLA DPE A L++ EIK+ RLAM + GF VQA+VTGKGPL N A HL+DP++ Sbjct: 96 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQALVTGKGPLENLADHLADPVN 252
BLAST of CK934348 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.161e-22 Identity = 72/161 (44.72%), Postives = 91/161 (56.52%), Query Frame = 1 Query: 130 RECELIHGRWVMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 561 RE E+IH RW ML LG + E GI W AG EG YLG P +++ I +V+++G +E R +DP LYPGG F DPLGLA DPE A L++ EIK+ RLAM + GF VQA+VTGKGPL N A HL+DP++ Sbjct: 97 RELEVIHCRWAMLGALGCVFPELFARNGIKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253
BLAST of CK934348 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.161e-22 Identity = 70/161 (43.48%), Postives = 92/161 (57.14%), Query Frame = 1 Query: 130 RECELIHGRWVMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 561 RE E+IH RW ML LG + E L+ G+ W AG EG YLG P +++ I +V+++G +E R DP +YPGG F DPLGLA DPE A L++ E+K+ RLAM + GF VQA+VTGKGPL N A HL+DP++ Sbjct: 85 RELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDP---IYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 241
BLAST of CK934348 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.516e-22 Identity = 71/161 (44.10%), Postives = 91/161 (56.52%), Query Frame = 1 Query: 130 RECELIHGRWVMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 561 RE E+IH RW ML LG + E G+ W AG EG YLG P +++ I +V+++G +E R +DP LYPGG F DPLGLA DPE A L++ EIK+ RLAM + GF VQA+VTGKGPL N A HL+DP++ Sbjct: 96 RELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDP---LYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 252
BLAST of CK934348 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.980e-22 Identity = 70/161 (43.48%), Postives = 91/161 (56.52%), Query Frame = 1 Query: 130 RECELIHGRWVMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 561 RE E+IH RW ML LG + E L G+ W AG EG YLG P +++ I +V+++G IE R DP +YPGG F DPLGLA DP+ A L++ EIK+ RLAM + GF VQA+VTGKGP+ N A HL+DP++ Sbjct: 108 RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDP---IYPGGNF-DPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVN 264
BLAST of CK934348 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.980e-22 Identity = 72/161 (44.72%), Postives = 91/161 (56.52%), Query Frame = 1 Query: 130 RECELIHGRWVMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 561 RE E+IH RW ML LG + E L G+ W AG EG YLG P +++ I +V+++G IE R DP LYPGG F DPLGLA DPE A L++ EIK+ RLAM + GF VQA+VTGKGPL+N HL+DP++ Sbjct: 97 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVTDP---LYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVN 253
BLAST of CK934348 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.980e-22 Identity = 71/161 (44.10%), Postives = 91/161 (56.52%), Query Frame = 1 Query: 130 RECELIHGRWVMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 561 RE E+IH RW ML LG + E L G+ W AG EG YLG P +++ I +V+++G +E R +DP LYPGG F DPLGLA DPE A L++ IK+ RLAM + GF VQA+VTGKGPL N A HL+DP++ Sbjct: 97 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253
BLAST of CK934348 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.980e-22 Identity = 71/161 (44.10%), Postives = 91/161 (56.52%), Query Frame = 1 Query: 130 RECELIHGRWVMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 561 RE E+IHGRW ML LG + E L G+ W G EG YLG P +++ I +V+++G +E R +DP LYPGG F DPLGLA D E A L++ EIK+ RLAM + GF VQA+VTGKGPL N A HL+DP++ Sbjct: 94 RELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP---LYPGGSF-DPLGLADDAEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 250 The following BLAST results are available for this feature:
BLAST of CK934348 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CK934348 ID=CK934348; Name=CK934348; organism=Citrus sinensis; type=EST; length=785bpback to top |