CK934348

Overview
NameCK934348
Unique NameCK934348
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934348_ssr634 microsatellite CK934348_ssr634:634..648. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8154 contig Csv1_Contig8154:353..1137. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934348 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.980e-22
Identity = 69/162 (42.59%), Postives = 91/162 (56.17%), Query Frame = 1
Query:  124 RFRECELIHGRWVMLATLGALTVEWL--TGI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 558
            R RE E+IH RW ML  LG    E L   G+      W  AG     EG   YLG P      +++ I   +V+++G++E  R         LDP   LYPGG F DPLGLA DP+  A L++ E+K+ RLAM +  GF VQA+VTGKGP+ N   H++DP+
Sbjct:   93 RNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDP---LYPGGAF-DPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPV 250          
BLAST of CK934348 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.585e-22
Identity = 70/161 (43.48%), Postives = 91/161 (56.52%), Query Frame = 1
Query:  130 RECELIHGRWVMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 561
            RE E+IH RW ML  LG +  E L   G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R          DP   +YPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGP+ N A HL+DP++
Sbjct:  104 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDP---IYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVN 260          
BLAST of CK934348 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.585e-22
Identity = 70/162 (43.21%), Postives = 94/162 (58.02%), Query Frame = 1
Query:  124 RFRECELIHGRWVMLATLGALTVEWLT--GIT-----WQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 558
            R RE E+IH RW ML  LG +  E L+  G+T     W  AG     EG   YLG P      +++ I   +V+++G++E  R         LD   ++YPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGP+ N   H++DP+
Sbjct:   93 RNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGPLGEGLD---KIYPGGAF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADPV 250          
BLAST of CK934348 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.585e-22
Identity = 67/158 (42.41%), Postives = 87/158 (55.06%), Query Frame = 1
Query:  130 RECELIHGRWVMLATLGALTVEWLTGIT--------WQDAGKVELVEGS-SYLGQPLPF---SITTLIWIEVLVIGYIEFQRNSELD---PEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 558
            R  E+IHGRW ML  LG +  E L            W  AG     +G   YLG P      SI  ++  +V+++G +E  R + L        LYPGG++FDPLGLA DP   A L++ EIK+ RLAM +  GF VQA+VTGKGPL N   HL +P+
Sbjct:   93 RALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPV 250          
BLAST of CK934348 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.377e-22
Identity = 67/161 (41.61%), Postives = 91/161 (56.52%), Query Frame = 1
Query:  130 RECELIHGRWVMLATLGALTVEWLT--------GITWQDAGKVELVEGSSYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 561
            RE E+IH RW ML  LG +  E L          + ++   ++    G  YLG P      +++ I   +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:   97 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253          
BLAST of CK934348 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.377e-22
Identity = 70/161 (43.48%), Postives = 91/161 (56.52%), Query Frame = 1
Query:  130 RECELIHGRWVMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 561
            R+ E+IH RW ML  LG +  E     G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:   96 RKLEVIHCRWTMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDP---LYPGGSF-DPLGLADDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 252          
BLAST of CK934348 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.410e-22
Identity = 69/161 (42.86%), Postives = 91/161 (56.52%), Query Frame = 1
Query:  130 RECELIHGRWVMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 561
            RE E+IH RW ML  LG +  E L   G+      W  AG     EG   YLG P      +++ I   +V+++G IE  R          DP   +YPGG F DPLGLA DP+  A +++ EIK+ RLAM +  GF VQA+VTGKGP+ N A HL+DP++
Sbjct:  108 RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDP---IYPGGNF-DPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVN 264          
BLAST of CK934348 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.410e-22
Identity = 69/162 (42.59%), Postives = 94/162 (58.02%), Query Frame = 1
Query:  124 RFRECELIHGRWVMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 558
            R RE E+IH RW ML  LG +  E L+  G+      W  AG     EG   YLG P      +++ I   +V+++G++E  R         LD   ++YPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGP+ N + H++DP+
Sbjct:   93 RNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLD---KIYPGGAF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPV 250          
BLAST of CK934348 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.410e-22
Identity = 69/161 (42.86%), Postives = 91/161 (56.52%), Query Frame = 1
Query:  130 RECELIHGRWVMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 561
            RE E+IH RW ML  LG +  E L+  G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R          DP   +YPGG F DPLGLA DPE  A L++ E+K+ RLAM +  GF VQA+VTGKGPL N A HL+ P++
Sbjct:   93 RELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDP---IYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAGPVN 249          
BLAST of CK934348 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.410e-22
Identity = 69/161 (42.86%), Postives = 91/161 (56.52%), Query Frame = 1
Query:  130 RECELIHGRWVMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 561
            RE E+IH RW ML  LG +  E L   G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R         +DP   LYPGG F DPLGLA DPE    L++ E+K  RLAM++  GF VQA+VTGKGPL N A H++DP++
Sbjct:   95 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLADHIADPVN 251          
The following BLAST results are available for this feature:
BLAST of CK934348 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
CB215_PEA1.980e-2242.59Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB2B_PINSY2.585e-2243.48Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB26_PETSP2.585e-2243.21Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB23_SOLLC2.585e-2242.41Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_NICPL3.377e-2241.61Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB21_PETSP3.377e-2243.48Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB2A_PYRPY4.410e-2242.86Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB24_SOLLC4.410e-2242.59Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB23_SOYBN4.410e-2242.86Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB22_MAIZE4.410e-2242.86Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004260_B09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIIF_B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934348 ID=CK934348; Name=CK934348; organism=Citrus sinensis; type=EST; length=785bp
GGGGACTCGTTGGACCAGAACTTGGCTAAGAACCCGGCTGGCGATATTAT
TGGGACGAGGATTGAGGCCTCTGACATGCAGTCCACGCCGCTTCAGCCGT
ACACTGAAGTCTTTGGTCTGCAGAGGTTCCGTGAGTGTGAGCTCATTCAT
GGACGTTGGGTCATGTTGGCTACTCTCGGTGCCCTCACTGTTGAGTGGCT
CACTGGGATTACTTGGCAAGACGCTGGCAAGGTAGAGTTAGTTGAAGGAT
CATCATACCTGGGGCAACCACTTCCATTCTCAATAACAACGTTGATATGG
ATTGAGGTTTTGGTAATTGGCTACATTGAGTTCCAAAGAAACTCAGAGCT
TGACCCGGAGAAGAGACTCTACCCGGGAGGAAAGTTTTTTGATCCTCTGG
GCTTGGCCGCTGACCCGGAAAAGAAAGCCACCCTTCAATTGGCAGAGATC
AAGCACGCCCGCCTTGCCATGGTTGCATTCCTTGGCTTCGCTGTCCAAGC
TGTTGTCACCGGAAAAGGCCCTCTCAACAACTGGGCTACCCACTTGAGCG
ATCCTCTTCACACAACCATTCTTGACACCTTCATCTCTTAGATTTCTGGT
GTAGCCTCCAGTACTTGGCAGTTGGCACTATTGTTATTATTATTATTATA
TGCGCCTATCTTGTAAAAAGAATTATAACATTTGACAGCTTAAGGGGAAT
GCTATGGCTTCATATTTTGAAGTCATTTCATCTTTGCAGAAAAAAAAAAA
AAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAA
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