CK934348

Overview
NameCK934348
Unique NameCK934348
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934348_ssr634 microsatellite CK934348_ssr634:634..648. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8154 contig Csv1_Contig8154:353..1137. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934348 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 4.410e-22
Identity = 69/160 (43.12%), Postives = 92/160 (57.50%), Query Frame = 1
Query:  130 RECELIHGRWVMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 558
            RE E+IH RW ML  LG +  E L+  G+      W  AG     EG   YLG P      +++ I   +V+++G++E  R         LDP   +YPGG F DPLGLA DP+  A L++ EIK+ RLAM +  GF VQA+VTGKGP+ N   HL+DP+
Sbjct:   95 RELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDP---IYPGGAF-DPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPV 250          
BLAST of CK934348 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.760e-22
Identity = 69/161 (42.86%), Postives = 91/161 (56.52%), Query Frame = 1
Query:  130 RECELIHGRWVMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 561
            RE E+IH  W ML  LG +  E L+  G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R          DP   +YPGG F DPLGLA DPE  A L++ E+K+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:   36 RELEVIHSTWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDP---IYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 192          
BLAST of CK934348 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.825e-22
Identity = 69/162 (42.59%), Postives = 88/162 (54.32%), Query Frame = 1
Query:  121 QRFRECELIHGRWVMLATLGALTVEWLTG-------ITWQDAGKVELVEGS-SYLGQPLPFSITTLIW---IEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDP 555
            +R+RE ELIH RW ML  LG  T E L           W  AG     EG   YLG P       ++    ++V+++G IE  R         LDP   LYPG + FDPLGLA DP+  A L++ EIK+ RLA  +  GF VQA+VTGKGP+ N   HL++P
Sbjct:   80 KRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDP---LYPG-ESFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANP 237          
BLAST of CK934348 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.825e-22
Identity = 70/161 (43.48%), Postives = 90/161 (55.90%), Query Frame = 1
Query:  130 RECELIHGRWVMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQRNSE------LDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 561
            RE E+IH RW ML  LG +  E     G+      W  AG     EG   YLG P      +++ I   +VL++G +E  R +       +DP   LYPGG F DPLGLA DPE  A L++ E K+ RLAM +  GF +QA+VTGKGPL N A HL DP++
Sbjct:   97 RELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYRVAGGPLGVVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDPVN 253          
BLAST of CK934348 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.283e-21
Identity = 69/164 (42.07%), Postives = 92/164 (56.10%), Query Frame = 1
Query:  121 QRFRECELIHGRWVMLATLGALTVEWLT---------GITWQDAGKVELVEGS-SYLGQPLPF---SITTLIWIEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDP 555
            +R+RE ELIH R  +L  LG +T E L             W  AG     +G  +YLG P      +I   + ++V+++G +E  R         LDP   LYPG + FDPLGLA DP+  A L++ EIK+ RLAM A LGF VQA+VTGKGP+ N   HL++P
Sbjct:   99 KRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDP---LYPG-EAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANP 258          
BLAST of CK934348 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.283e-21
Identity = 68/162 (41.98%), Postives = 94/162 (58.02%), Query Frame = 1
Query:  124 RFRECELIHGRWVMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 558
            R RE E+IH RW ML  LG +  E L+  G+      W  AG     EG   YLG P      ++  IW ++V+++G++E  R         LD   ++YPGG F DPLGLA DP+  A L++ E+K+ RLAM +  GF VQA+VTGKGP+ N   H++DP+
Sbjct:   91 RNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLD---KVYPGGAF-DPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPV 248          
BLAST of CK934348 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.283e-21
Identity = 68/162 (41.98%), Postives = 94/162 (58.02%), Query Frame = 1
Query:  124 RFRECELIHGRWVMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 558
            R RE E+IH RW ML  LG +  E L+  G+      W  AG     EG   YLG P      ++  IW ++V+++G++E  R         LD   ++YPGG F DPLGLA DP+  A L++ E+K+ RLAM +  GF VQA+VTGKGP+ N   H++DP+
Sbjct:   91 RNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLD---KVYPGGAF-DPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPV 248          
BLAST of CK934348 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.283e-21
Identity = 69/161 (42.86%), Postives = 91/161 (56.52%), Query Frame = 1
Query:  130 RECELIHGRWVMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 561
            RE E+IH RW ML  LG +  E L+  G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R         +DP   LYPGG F DPLGLA  PE  A L++ E+K+ RLAM +  GF V A+VTGKGPL N A HL+DP++
Sbjct:   58 RELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPVN 214          
BLAST of CK934348 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.859e-21
Identity = 69/162 (42.59%), Postives = 92/162 (56.79%), Query Frame = 1
Query:  124 RFRECELIHGRWVMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 558
            R RE E+IH RW ML  LG +  E L+  G+      W  AG     EG   YLG P      +++ +   +V+++G IE  R         LD   ++YPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGP+ N   H++DP+
Sbjct:   93 RNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGPLGEGLD---KIYPGGAF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPV 250          
BLAST of CK934348 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.733e-21
Identity = 72/161 (44.72%), Postives = 93/161 (57.76%), Query Frame = 1
Query:  130 RECELIHGRWVMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLG-QPLPFSITTL-IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 561
            RE E+IH RW ML  LG +  E L   G+     +W  AG     EG   YLG Q L  + + L IW  +V+++G +E  R          DP   +YPGG F DPL LA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL++P++
Sbjct:   75 RELEVIHSRWAMLGALGCVFPELLARNGVKFGEASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDP---IYPGGSF-DPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVN 231          
The following BLAST results are available for this feature:
BLAST of CK934348 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
CB21_GOSHI4.410e-2243.13Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB22_CUCSA5.760e-2242.86Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB2_CHLRE9.825e-2242.59Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_PETSP9.825e-2243.48Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB2_DUNSA1.283e-2142.07Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_ORYSJ1.283e-2141.98Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI1.283e-2141.98Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PEA1.283e-2142.86Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB23_TOBAC2.859e-2142.59Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB21_SOYBN3.733e-2144.72Chlorophyll a-b binding protein, chloroplastic (Fr... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004260_B09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIIF_B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934348 ID=CK934348; Name=CK934348; organism=Citrus sinensis; type=EST; length=785bp
GGGGACTCGTTGGACCAGAACTTGGCTAAGAACCCGGCTGGCGATATTAT
TGGGACGAGGATTGAGGCCTCTGACATGCAGTCCACGCCGCTTCAGCCGT
ACACTGAAGTCTTTGGTCTGCAGAGGTTCCGTGAGTGTGAGCTCATTCAT
GGACGTTGGGTCATGTTGGCTACTCTCGGTGCCCTCACTGTTGAGTGGCT
CACTGGGATTACTTGGCAAGACGCTGGCAAGGTAGAGTTAGTTGAAGGAT
CATCATACCTGGGGCAACCACTTCCATTCTCAATAACAACGTTGATATGG
ATTGAGGTTTTGGTAATTGGCTACATTGAGTTCCAAAGAAACTCAGAGCT
TGACCCGGAGAAGAGACTCTACCCGGGAGGAAAGTTTTTTGATCCTCTGG
GCTTGGCCGCTGACCCGGAAAAGAAAGCCACCCTTCAATTGGCAGAGATC
AAGCACGCCCGCCTTGCCATGGTTGCATTCCTTGGCTTCGCTGTCCAAGC
TGTTGTCACCGGAAAAGGCCCTCTCAACAACTGGGCTACCCACTTGAGCG
ATCCTCTTCACACAACCATTCTTGACACCTTCATCTCTTAGATTTCTGGT
GTAGCCTCCAGTACTTGGCAGTTGGCACTATTGTTATTATTATTATTATA
TGCGCCTATCTTGTAAAAAGAATTATAACATTTGACAGCTTAAGGGGAAT
GCTATGGCTTCATATTTTGAAGTCATTTCATCTTTGCAGAAAAAAAAAAA
AAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAA
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