CK934348

Overview
NameCK934348
Unique NameCK934348
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934348_ssr634 microsatellite CK934348_ssr634:634..648. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8154 contig Csv1_Contig8154:353..1137. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934348 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.519e-14
Identity = 66/187 (35.29%), Postives = 91/187 (48.66%), Query Frame = 1
Query:   91 LQPYTEVFGLQRFRECELIHGRWVMLATLGALTVEWLTGI-------TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQRNSE------LDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTILDTFIS*ISG 600
            L  Y E F   + RE E+IH R  M A LG +  E L+ +        W  AG     EG   YLG P      +++ I   +V+++G +E  R +        DP   LYPG   FD LGLA D E  A L++ E+K+ RLAM +  GF VQA+V+ K  L N A HL   ++   L    + + G
Sbjct:   88 LSAYPETFA--KNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIARGPLGEVTDP---LYPGS--FDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNVTNFVPG 267          
BLAST of CK934348 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.089e-12
Identity = 56/156 (35.90%), Postives = 73/156 (46.79%), Query Frame = 1
Query:  121 QRFRECELIHGRWVMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRN-SELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTILDTFI 585
            +R R  E+ HGR  MLA +GAL  ++L    W +A +      ++ +G          + I     G  E  R   E      +YPG   FDPL L  D  K+A     EIK+ RLA+ A LGF VQ  V G  PL N A HL  PL   I D+ +
Sbjct:   38 ERMRIAEVYHGRLAMLAVVGALVPDYLGKGIWYEAAQ------NAGIG-------LKEVAIFTAAYGVFEVARGVKENSDPTTIYPG---FDPLNLTTDYTKEA-----EIKNGRLALTALLGFEVQRHVVGGSPLANLAEHLQQPLQRNIADSIM 172          

HSP 2 Score: 68.5514 bits (166), Expect = 4.574e-11
Identity = 52/149 (34.90%), Postives = 72/149 (48.32%), Query Frame = 1
Query:  124 RFRECELIHGRWVMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTI 570
            R R  E+ HGR  ML T+G +  E L    W +AG  + V+G       +  +  T  W      G   +Q+  ELD   R YPG   FDPL L  D  + A     E+K+ RLA+ A  G   Q + TG+ PL N + HL++P+   I
Sbjct:  224 RMRVAEVFHGRLAMLCTVGCIVPELLGKGAWFEAG--DSVDGLKLGFITMAIAAPTEYWRGQ---GGFNWQKG-ELD---RSYPG---FDPLNLTTDYTRAA-----EVKNGRLALTAVAGLTAQYLATGESPLANLSAHLANPIGANI 355          
BLAST of CK934348 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.089e-12
Identity = 56/171 (32.75%), Postives = 80/171 (46.78%), Query Frame = 1
Query:  118 LQRFRECELIHGRWVMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR-----------------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTILDT 579
            L+ F + ++++GRW ML   G L  E LT      AG +   E     G+   F+ ++      +   Y+E +R                 +  L P +  YPG + F+PL  A    K+      E+ + RLAM+AFLGF VQ  V GKGP  N   HL+DP H TI+ T
Sbjct:   68 LRWFVQADVVNGRWAMLGVAGMLIPEVLT-----KAGLMNAPEWLRLPGKETYFASSSTALRVHMSSTYVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYPG-RVFNPLNFAPLENKEK-----ELANGRLAMLAFLGFLVQHNVHGKGPFENLQQHLADPWHNTIIQT 227          
The following BLAST results are available for this feature:
BLAST of CK934348 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
CB2_MALDO1.519e-1435.29Chlorophyll a-b binding protein AB10, chloroplasti... [more]
LH18_EUGGR1.089e-1235.90Light-harvesting complex I LH38 proteins (Fragment... [more]
CB120_HORVU1.089e-1232.75Chlorophyll a-b binding protein 1B-20, chloroplast... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004260_B09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIIF_B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934348 ID=CK934348; Name=CK934348; organism=Citrus sinensis; type=EST; length=785bp
GGGGACTCGTTGGACCAGAACTTGGCTAAGAACCCGGCTGGCGATATTAT
TGGGACGAGGATTGAGGCCTCTGACATGCAGTCCACGCCGCTTCAGCCGT
ACACTGAAGTCTTTGGTCTGCAGAGGTTCCGTGAGTGTGAGCTCATTCAT
GGACGTTGGGTCATGTTGGCTACTCTCGGTGCCCTCACTGTTGAGTGGCT
CACTGGGATTACTTGGCAAGACGCTGGCAAGGTAGAGTTAGTTGAAGGAT
CATCATACCTGGGGCAACCACTTCCATTCTCAATAACAACGTTGATATGG
ATTGAGGTTTTGGTAATTGGCTACATTGAGTTCCAAAGAAACTCAGAGCT
TGACCCGGAGAAGAGACTCTACCCGGGAGGAAAGTTTTTTGATCCTCTGG
GCTTGGCCGCTGACCCGGAAAAGAAAGCCACCCTTCAATTGGCAGAGATC
AAGCACGCCCGCCTTGCCATGGTTGCATTCCTTGGCTTCGCTGTCCAAGC
TGTTGTCACCGGAAAAGGCCCTCTCAACAACTGGGCTACCCACTTGAGCG
ATCCTCTTCACACAACCATTCTTGACACCTTCATCTCTTAGATTTCTGGT
GTAGCCTCCAGTACTTGGCAGTTGGCACTATTGTTATTATTATTATTATA
TGCGCCTATCTTGTAAAAAGAATTATAACATTTGACAGCTTAAGGGGAAT
GCTATGGCTTCATATTTTGAAGTCATTTCATCTTTGCAGAAAAAAAAAAA
AAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAA
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