CK934352

Overview
NameCK934352
Unique NameCK934352
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B1_TIGCA (Histone H2B.1/H2B.2 OS=Tigriopus californicus PE=3 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.233e-34
Identity = 72/86 (83.72%), Postives = 80/86 (93.02%), Query Frame = 3 
Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 118
[Close]
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B_PATGR (Histone H2B, gonadal OS=Patella granatina PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.611e-34
Identity = 71/86 (82.56%), Postives = 80/86 (93.02%), Query Frame = 3 
Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            E+Y IYI+KVLKQVHPD G+SSKAM IMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   32 ESYSIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 117
[Close]
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B_DROYA (Histone H2B OS=Drosophila yakuba GN=His2B PE=3 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 1.611e-34
Identity = 72/86 (83.72%), Postives = 80/86 (93.02%), Query Frame = 3 
Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 118
[Close]
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B_DROTE (Histone H2B OS=Drosophila teissieri GN=His2B PE=3 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 1.611e-34
Identity = 72/86 (83.72%), Postives = 80/86 (93.02%), Query Frame = 3 
Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 118
[Close]
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B_DROSI (Histone H2B OS=Drosophila simulans GN=His2B PE=3 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.611e-34
Identity = 72/86 (83.72%), Postives = 80/86 (93.02%), Query Frame = 3 
Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 118
[Close]
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B_DROSE (Histone H2B OS=Drosophila sechellia GN=His2B PE=3 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 1.611e-34
Identity = 72/86 (83.72%), Postives = 80/86 (93.02%), Query Frame = 3 
Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 118
[Close]
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B_DROOR (Histone H2B OS=Drosophila orena GN=His2B PE=3 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 1.611e-34
Identity = 72/86 (83.72%), Postives = 80/86 (93.02%), Query Frame = 3 
Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 118
[Close]
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B_DROME (Histone H2B OS=Drosophila melanogaster GN=His2B PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.611e-34
Identity = 72/86 (83.72%), Postives = 80/86 (93.02%), Query Frame = 3 
Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 118
[Close]
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B_DROMA (Histone H2B OS=Drosophila mauritiana GN=His2B PE=3 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 1.611e-34
Identity = 72/86 (83.72%), Postives = 80/86 (93.02%), Query Frame = 3 
Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 118
[Close]
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B_DROHY (Histone H2B OS=Drosophila hydei GN=His2B PE=3 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.611e-34
Identity = 72/86 (83.72%), Postives = 80/86 (93.02%), Query Frame = 3 
Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 118
The following BLAST results are available for this feature:
BLAST of CK934352 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B1_TIGCA1.233e-3483.72Histone H2B.1/H2B.2 OS=Tigriopus californicus PE=3... [more]
H2B_PATGR1.611e-3482.56Histone H2B, gonadal OS=Patella granatina PE=1 SV=... [more]
H2B_DROYA1.611e-3483.72Histone H2B OS=Drosophila yakuba GN=His2B PE=3 SV=... [more]
H2B_DROTE1.611e-3483.72Histone H2B OS=Drosophila teissieri GN=His2B PE=3 ... [more]
H2B_DROSI1.611e-3483.72Histone H2B OS=Drosophila simulans GN=His2B PE=3 S... [more]
H2B_DROSE1.611e-3483.72Histone H2B OS=Drosophila sechellia GN=His2B PE=3 ... [more]
H2B_DROOR1.611e-3483.72Histone H2B OS=Drosophila orena GN=His2B PE=3 SV=3[more]
H2B_DROME1.611e-3483.72Histone H2B OS=Drosophila melanogaster GN=His2B PE... [more]
H2B_DROMA1.611e-3483.72Histone H2B OS=Drosophila mauritiana GN=His2B PE=3... [more]
H2B_DROHY1.611e-3483.72Histone H2B OS=Drosophila hydei GN=His2B PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionCGF1004260_C03 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIIF_C03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934352 ID=CK934352; Name=CK934352; organism=Citrus sinensis; type=EST; length=649bp
GCGGGGGAAATCGAAATAACAAAGTAAAAANNNATCAAATGGCAGCGAAA
GCCGAGAAAAAGCCCGCCGAGAAGAAGCTGGCAGCCGAGAAGGCCCCTGC
TGCCGAGAAAAAATCGAGGGCTGAGAAGAAGCTTCCGAAAGACGGCGCCG
ACAAGAAGAAGAAGAAAGTGAAGAAGACCGTGGAGACCTACAAGATCTAC
ATATTCAAGGTGCTGAAGCAGGTGCATCCTGATATAGGAATCTCCAGCAA
GGCCATGGGTATCATGAACAGCTTTATCAACGATATCTTCGAGAAATTGG
CTCAGGAGTCGTCTCGTCTCGCGAGATACAACAAGAAGCCCACTATCACT
TCTCGTGAGATCCAGACTGCTGTTAGACTTGTCTTGCCCGGTGAGCTTGC
CAAGCATGCCGTTTCTGAAGGCACCAAGGCTGTCACTAAGTTTACTAGCT
CTTAATGAACCTATAGCTTCAATAATTCAATTAGTATCTTCTCTTTCTAG
CTTGGGCTCTGCAATTTTTGAGGTCCTGTTTCTTTTATTTTCCTTTTGGT
TGTAGATTTTCTCTTTTGTTTACTTTTTGTATCTACCCTACCCAACAACC
TAATCGAAGTTCTTTTTGCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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