CK934352

Overview
NameCK934352
Unique NameCK934352
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B4_CAEEL (Probable histone H2B 4 OS=Caenorhabditis elegans GN=his-48 PE=2 SV=3)

HSP 1 Score: 143.665 bits (361), Expect = 7.993e-34
Identity = 67/86 (77.91%), Postives = 80/86 (93.02%), Query Frame = 3
Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            E+Y +YI++VLKQVHPD G+SSKAM IMNSF+ND+FE++A E+SRLA YNK+ TI+SREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   33 ESYSVYIYRVLKQVHPDTGVSSKAMSIMNSFVNDVFERIASEASRLAHYNKRSTISSREIQTAVRLILPGELAKHAVSEGTKAVTK 118          
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B3_CAEEL (Probable histone H2B 3 OS=Caenorhabditis elegans GN=his-41 PE=2 SV=3)

HSP 1 Score: 143.665 bits (361), Expect = 7.993e-34
Identity = 67/86 (77.91%), Postives = 80/86 (93.02%), Query Frame = 3
Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            E+Y +YI++VLKQVHPD G+SSKAM IMNSF+ND+FE++A E+SRLA YNK+ TI+SREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   33 ESYSVYIYRVLKQVHPDTGVSSKAMSIMNSFVNDVFERIASEASRLAHYNKRSTISSREIQTAVRLILPGELAKHAVSEGTKAVTK 118          
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B1A_RAT (Histone H2B type 1-A OS=Rattus norvegicus GN=Hist1h2ba PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 7.993e-34
Identity = 71/86 (82.56%), Postives = 79/86 (91.86%), Query Frame = 3
Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+ DIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   37 ESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVTDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 122          
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B_OLILU (Histone H2B OS=Olisthodiscus luteus PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 1.044e-33
Identity = 71/87 (81.61%), Postives = 79/87 (90.80%), Query Frame = 3
Query:  180 VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            VETY  YI+KVLKQVHPD GIS + M IMNSFINDIFE+LA E+SRLARYNK+ T++SREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   24 VETYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDIFERLAGEASRLARYNKRSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTK 110          
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2BL4_STRPU (Late histone H2B.L4 (Fragment) OS=Strongylocentrotus purpuratus PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.044e-33
Identity = 69/86 (80.23%), Postives = 81/86 (94.19%), Query Frame = 3
Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            E+Y IYI+KVLKQVHPD GISS+AM IMNSF+ND+FE++A E+SRLA+YNKK TI+SRE+QTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   17 ESYGIYIYKVLKQVHPDTGISSRAMSIMNSFVNDVFERIAGEASRLAQYNKKSTISSREVQTAVRLLLPGELAKHAVSEGTKAVTK 102          
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2BL2_PSAMI (Late histone H2B.2.2 OS=Psammechinus miliaris PE=3 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 1.044e-33
Identity = 69/86 (80.23%), Postives = 81/86 (94.19%), Query Frame = 3
Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+ND+FE++A E+SRL++YNKK TI+SRE+QTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   34 ESYGIYIYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLSQYNKKSTISSREVQTAVRLLLPGELAKHAVSEGTKAVTK 119          
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2BL1_STRPU (Late histone H2B.L1 OS=Strongylocentrotus purpuratus PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 1.044e-33
Identity = 69/86 (80.23%), Postives = 79/86 (91.86%), Query Frame = 3
Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            E+Y IYI+KVLKQVHPD GISS+AM IMNSF+ND+FE++A E+SRLA YNKK TITSRE+QT VRL+LPGELAKHAVSEGTKAVTK
Sbjct:   33 ESYGIYIYKVLKQVHPDTGISSRAMSIMNSFVNDVFERIAAEASRLAHYNKKSTITSREVQTVVRLLLPGELAKHAVSEGTKAVTK 118          
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B2_CAEEL (Histone H2B 2 OS=Caenorhabditis elegans GN=his-4 PE=1 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 1.044e-33
Identity = 67/86 (77.91%), Postives = 80/86 (93.02%), Query Frame = 3
Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            E+Y +YI++VLKQVHPD G+SSKAM IMNSF+ND+FE++A E+SRLA YNK+ TI+SREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   33 ESYSVYIYRVLKQVHPDTGVSSKAMSIMNSFVNDVFERIAAEASRLAHYNKRSTISSREIQTAVRLILPGELAKHAVSEGTKAVTK 118          
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B1_CAEEL (Histone H2B 1 OS=Caenorhabditis elegans GN=his-11 PE=1 SV=4)

HSP 1 Score: 143.28 bits (360), Expect = 1.044e-33
Identity = 67/86 (77.91%), Postives = 80/86 (93.02%), Query Frame = 3
Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            E+Y +YI++VLKQVHPD G+SSKAM IMNSF+ND+FE++A E+SRLA YNK+ TI+SREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   32 ESYSVYIYRVLKQVHPDTGVSSKAMSIMNSFVNDVFERIAAEASRLAHYNKRSTISSREIQTAVRLILPGELAKHAVSEGTKAVTK 117          
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2BE1_PSAMI (Histone H2B.1, embryonic OS=Psammechinus miliaris PE=3 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 3.967e-33
Identity = 69/86 (80.23%), Postives = 80/86 (93.02%), Query Frame = 3
Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            E+Y IYI+KVLKQVHPD G+SS+AM IMNSF+NDIFE++A E+SRL +YNKK TI+SREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   33 ESYGIYIYKVLKQVHPDTGVSSRAMTIMNSFVNDIFERIAGEASRLTQYNKKSTISSREIQTAVRLLLPGELAKHAVSEGTKAVTK 118          
The following BLAST results are available for this feature:
BLAST of CK934352 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B4_CAEEL7.993e-3477.91Probable histone H2B 4 OS=Caenorhabditis elegans G... [more]
H2B3_CAEEL7.993e-3477.91Probable histone H2B 3 OS=Caenorhabditis elegans G... [more]
H2B1A_RAT7.993e-3482.56Histone H2B type 1-A OS=Rattus norvegicus GN=Hist1... [more]
H2B_OLILU1.044e-3381.61Histone H2B OS=Olisthodiscus luteus PE=1 SV=2[more]
H2BL4_STRPU1.044e-3380.23Late histone H2B.L4 (Fragment) OS=Strongylocentrot... [more]
H2BL2_PSAMI1.044e-3380.23Late histone H2B.2.2 OS=Psammechinus miliaris PE=3... [more]
H2BL1_STRPU1.044e-3380.23Late histone H2B.L1 OS=Strongylocentrotus purpurat... [more]
H2B2_CAEEL1.044e-3377.91Histone H2B 2 OS=Caenorhabditis elegans GN=his-4 P... [more]
H2B1_CAEEL1.044e-3377.91Histone H2B 1 OS=Caenorhabditis elegans GN=his-11 ... [more]
H2BE1_PSAMI3.967e-3380.23Histone H2B.1, embryonic OS=Psammechinus miliaris ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004260_C03 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIIF_C03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934352 ID=CK934352; Name=CK934352; organism=Citrus sinensis; type=EST; length=649bp
GCGGGGGAAATCGAAATAACAAAGTAAAAANNNATCAAATGGCAGCGAAA
GCCGAGAAAAAGCCCGCCGAGAAGAAGCTGGCAGCCGAGAAGGCCCCTGC
TGCCGAGAAAAAATCGAGGGCTGAGAAGAAGCTTCCGAAAGACGGCGCCG
ACAAGAAGAAGAAGAAAGTGAAGAAGACCGTGGAGACCTACAAGATCTAC
ATATTCAAGGTGCTGAAGCAGGTGCATCCTGATATAGGAATCTCCAGCAA
GGCCATGGGTATCATGAACAGCTTTATCAACGATATCTTCGAGAAATTGG
CTCAGGAGTCGTCTCGTCTCGCGAGATACAACAAGAAGCCCACTATCACT
TCTCGTGAGATCCAGACTGCTGTTAGACTTGTCTTGCCCGGTGAGCTTGC
CAAGCATGCCGTTTCTGAAGGCACCAAGGCTGTCACTAAGTTTACTAGCT
CTTAATGAACCTATAGCTTCAATAATTCAATTAGTATCTTCTCTTTCTAG
CTTGGGCTCTGCAATTTTTGAGGTCCTGTTTCTTTTATTTTCCTTTTGGT
TGTAGATTTTCTCTTTTGTTTACTTTTTGTATCTACCCTACCCAACAACC
TAATCGAAGTTCTTTTTGCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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