CK934352

Overview
NameCK934352
Unique NameCK934352
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B1A_HUMAN (Histone H2B type 1-A OS=Homo sapiens GN=HIST1H2BA PE=1 SV=3)

HSP 1 Score: 140.969 bits (354), Expect = 5.181e-33
Identity = 69/86 (80.23%), Postives = 79/86 (91.86%), Query Frame = 3 
Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+ DIFE++A E+SRLA Y+K+ TI+SREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   37 ESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVTDIFERIASEASRLAHYSKRSTISSREIQTAVRLLLPGELAKHAVSEGTKAVTK 122
[Close]
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B1_RAT (Histone H2B type 1 OS=Rattus norvegicus PE=1 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 6.767e-33
Identity = 70/86 (81.40%), Postives = 79/86 (91.86%), Query Frame = 3 
Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A E  RLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGER-RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 120
[Close]
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B_GIBZE (Histone H2B OS=Gibberella zeae GN=HTB1 PE=3 SV=3)

HSP 1 Score: 139.813 bits (351), Expect = 1.154e-32
Identity = 67/86 (77.91%), Postives = 79/86 (91.86%), Query Frame = 3 
Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            ETY  YI+KVLKQVHPD GIS++AM I+NSF+NDIFE++A E+S+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK
Sbjct:   46 ETYSSYIYKVLKQVHPDTGISNRAMSILNSFVNDIFERVASEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTK 131
[Close]
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: HSB1_PICST (Histone H2B.1 OS=Pichia stipitis GN=HTB1 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.507e-32
Identity = 67/86 (77.91%), Postives = 77/86 (89.53%), Query Frame = 3 
Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            ETY  YI+KVLKQ HPD GIS KAM IMNSF+NDIFE++A E+S+LA YNKK TI++REIQTAVRL+LPGELAKHAVSEGT+AVTK
Sbjct:   40 ETYSSYIYKVLKQTHPDTGISQKAMSIMNSFVNDIFERIASEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTK 125
[Close]
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B_ROSNE (Histone H2B OS=Rosellinia necatrix GN=hh2b PE=3 SV=3)

HSP 1 Score: 139.428 bits (350), Expect = 1.507e-32
Identity = 67/86 (77.91%), Postives = 79/86 (91.86%), Query Frame = 3 
Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            ETY  YI+KVLKQVHPD GIS++AM I+NSF+NDIFE++A E+S+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK
Sbjct:   45 ETYSSYIYKVLKQVHPDTGISNRAMSILNSFVNDIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTK 130
[Close]
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B_PODAN (Histone H2B OS=Podospora anserina GN=HTB1 PE=3 SV=3)

HSP 1 Score: 139.428 bits (350), Expect = 1.507e-32
Identity = 67/86 (77.91%), Postives = 79/86 (91.86%), Query Frame = 3 
Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            ETY  YI+KVLKQVHPD GIS++AM I+NSF+NDIFE++A E+S+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK
Sbjct:   46 ETYSSYIYKVLKQVHPDTGISNRAMSILNSFVNDIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTK 131
[Close]
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B_NEUCR (Histone H2B OS=Neurospora crassa GN=hh2b PE=1 SV=4)

HSP 1 Score: 139.428 bits (350), Expect = 1.507e-32
Identity = 67/86 (77.91%), Postives = 79/86 (91.86%), Query Frame = 3 
Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            ETY  YI+KVLKQVHPD GIS++AM I+NSF+NDIFE++A E+S+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK
Sbjct:   46 ETYSSYIYKVLKQVHPDTGISNRAMSILNSFVNDIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTK 131
[Close]
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B_NEOFI (Histone H2B OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=htb1 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.507e-32
Identity = 67/86 (77.91%), Postives = 79/86 (91.86%), Query Frame = 3 
Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            ETY  YI+KVLKQVHPD GIS++AM I+NSF+NDIFE++A E+S+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK
Sbjct:   49 ETYSSYIYKVLKQVHPDTGISTRAMSILNSFVNDIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTK 134
[Close]
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B_MAGGR (Histone H2B OS=Magnaporthe grisea GN=HTB1 PE=2 SV=3)

HSP 1 Score: 139.428 bits (350), Expect = 1.507e-32
Identity = 67/86 (77.91%), Postives = 79/86 (91.86%), Query Frame = 3 
Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            ETY  YI+KVLKQVHPD GIS++AM I+NSF+NDIFE++A E+S+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK
Sbjct:   46 ETYSSYIYKVLKQVHPDTGISNRAMSILNSFVNDIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTK 131
[Close]
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B_EMENI (Histone H2B OS=Emericella nidulans GN=htbA PE=3 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.507e-32
Identity = 67/86 (77.91%), Postives = 79/86 (91.86%), Query Frame = 3 
Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            ETY  YI+KVLKQVHPD GIS++AM I+NSF+NDIFE++A E+S+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK
Sbjct:   49 ETYSSYIYKVLKQVHPDTGISTRAMSILNSFVNDIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTK 134
The following BLAST results are available for this feature:
BLAST of CK934352 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B1A_HUMAN5.181e-3380.23Histone H2B type 1-A OS=Homo sapiens GN=HIST1H2BA ... [more]
H2B1_RAT6.767e-3381.40Histone H2B type 1 OS=Rattus norvegicus PE=1 SV=2[more]
H2B_GIBZE1.154e-3277.91Histone H2B OS=Gibberella zeae GN=HTB1 PE=3 SV=3[more]
HSB1_PICST1.507e-3277.91Histone H2B.1 OS=Pichia stipitis GN=HTB1 PE=3 SV=1[more]
H2B_ROSNE1.507e-3277.91Histone H2B OS=Rosellinia necatrix GN=hh2b PE=3 SV... [more]
H2B_PODAN1.507e-3277.91Histone H2B OS=Podospora anserina GN=HTB1 PE=3 SV=... [more]
H2B_NEUCR1.507e-3277.91Histone H2B OS=Neurospora crassa GN=hh2b PE=1 SV=4[more]
H2B_NEOFI1.507e-3277.91Histone H2B OS=Neosartorya fischeri (strain ATCC 1... [more]
H2B_MAGGR1.507e-3277.91Histone H2B OS=Magnaporthe grisea GN=HTB1 PE=2 SV=... [more]
H2B_EMENI1.507e-3277.91Histone H2B OS=Emericella nidulans GN=htbA PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004260_C03 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIIF_C03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934352 ID=CK934352; Name=CK934352; organism=Citrus sinensis; type=EST; length=649bp
GCGGGGGAAATCGAAATAACAAAGTAAAAANNNATCAAATGGCAGCGAAA
GCCGAGAAAAAGCCCGCCGAGAAGAAGCTGGCAGCCGAGAAGGCCCCTGC
TGCCGAGAAAAAATCGAGGGCTGAGAAGAAGCTTCCGAAAGACGGCGCCG
ACAAGAAGAAGAAGAAAGTGAAGAAGACCGTGGAGACCTACAAGATCTAC
ATATTCAAGGTGCTGAAGCAGGTGCATCCTGATATAGGAATCTCCAGCAA
GGCCATGGGTATCATGAACAGCTTTATCAACGATATCTTCGAGAAATTGG
CTCAGGAGTCGTCTCGTCTCGCGAGATACAACAAGAAGCCCACTATCACT
TCTCGTGAGATCCAGACTGCTGTTAGACTTGTCTTGCCCGGTGAGCTTGC
CAAGCATGCCGTTTCTGAAGGCACCAAGGCTGTCACTAAGTTTACTAGCT
CTTAATGAACCTATAGCTTCAATAATTCAATTAGTATCTTCTCTTTCTAG
CTTGGGCTCTGCAATTTTTGAGGTCCTGTTTCTTTTATTTTCCTTTTGGT
TGTAGATTTTCTCTTTTGTTTACTTTTTGTATCTACCCTACCCAACAACC
TAATCGAAGTTCTTTTTGCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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