CK934352

Overview
NameCK934352
Unique NameCK934352
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B1_KLULA (Histone H2B.1 OS=Kluyveromyces lactis GN=HTB1 PE=3 SV=3)

HSP 1 Score: 137.887 bits (346), Expect = 4.386e-32
Identity = 66/86 (76.74%), Postives = 77/86 (89.53%), Query Frame = 3 
Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            ETY  YI+KVLKQ HPD GIS K+M I+NSF+NDIFE++A ESS+LA YNKK TI++REIQTAVRL+LPGELAKHAVSEGT+AVTK
Sbjct:   40 ETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATESSKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTK 125
[Close]
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B_AGABI (Histone H2B OS=Agaricus bisporus GN=htbA PE=2 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 5.728e-32
Identity = 65/86 (75.58%), Postives = 79/86 (91.86%), Query Frame = 3 
Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            ETY  YI+KVLKQVHPD GIS+KAM I+NSF+NDIFE++A E+S+LA Y+KK TI+SREIQT+VRL+LPGELAKHA+SEGTK+VTK
Sbjct:   52 ETYSSYIYKVLKQVHPDTGISNKAMAILNSFVNDIFERIATEASKLASYSKKSTISSREIQTSVRLILPGELAKHAISEGTKSVTK 137
[Close]
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B1_SCHPO (Histone H2B-alpha OS=Schizosaccharomyces pombe GN=htb1 PE=1 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 5.728e-32
Identity = 66/86 (76.74%), Postives = 79/86 (91.86%), Query Frame = 3 
Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            ETY  YI+KVLKQVHPD GIS++AM I+NSF+NDIFE++A E+S+LA YNKK TI+SREIQTAVRL+LPGELAKHAV+EGTK+VTK
Sbjct:   35 ETYSSYIYKVLKQVHPDTGISNQAMRILNSFVNDIFERIATEASKLAAYNKKSTISSREIQTAVRLILPGELAKHAVTEGTKSVTK 120
[Close]
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B2_CANGA (Histone H2B.2 OS=Candida glabrata GN=HTB2 PE=3 SV=3)

HSP 1 Score: 137.117 bits (344), Expect = 7.482e-32
Identity = 65/86 (75.58%), Postives = 77/86 (89.53%), Query Frame = 3 
Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            ETY  YI+KVLKQ HPD GIS K+M I+NSF+NDIFE++A E+S+LA YNKK TI++REIQTAVRL+LPGELAKHAVSEGT+AVTK
Sbjct:   39 ETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIASEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTK 124
[Close]
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B2_ASHGO (Histone H2B.2 OS=Ashbya gossypii GN=HTB2 PE=3 SV=3)

HSP 1 Score: 137.117 bits (344), Expect = 7.482e-32
Identity = 65/86 (75.58%), Postives = 77/86 (89.53%), Query Frame = 3 
Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            ETY  YI+KVLKQ HPD GIS K+M I+NSF+NDIFE++A E+S+LA YNKK TI++REIQTAVRL+LPGELAKHAVSEGT+AVTK
Sbjct:   35 ETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIASEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTK 120
[Close]
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B1_CANGA (Histone H2B.1 OS=Candida glabrata GN=HTB1 PE=3 SV=3)

HSP 1 Score: 137.117 bits (344), Expect = 7.482e-32
Identity = 65/86 (75.58%), Postives = 77/86 (89.53%), Query Frame = 3 
Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            ETY  YI+KVLKQ HPD GIS K+M I+NSF+NDIFE++A E+S+LA YNKK TI++REIQTAVRL+LPGELAKHAVSEGT+AVTK
Sbjct:   37 ETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIASEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTK 122
[Close]
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B1_ASHGO (Histone H2B.1 OS=Ashbya gossypii GN=HTB1 PE=3 SV=3)

HSP 1 Score: 137.117 bits (344), Expect = 7.482e-32
Identity = 65/86 (75.58%), Postives = 77/86 (89.53%), Query Frame = 3 
Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            ETY  YI+KVLKQ HPD GIS K+M I+NSF+NDIFE++A E+S+LA YNKK TI++REIQTAVRL+LPGELAKHAVSEGT+AVTK
Sbjct:   40 ETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIASEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTK 125
[Close]
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2BS1_PSAMI (Histone H2B.1, sperm OS=Psammechinus miliaris PE=1 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 9.771e-32
Identity = 63/86 (73.26%), Postives = 78/86 (90.70%), Query Frame = 3 
Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            E+Y IYI+KVLKQVHPD GISS+AM +MNSF+ND+FE++A E+ RL  YN++ T++SRE+QTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   47 ESYGIYIYKVLKQVHPDTGISSRAMSVMNSFVNDVFERIASEAGRLTTYNRRNTVSSREVQTAVRLLLPGELAKHAVSEGTKAVTK 132
[Close]
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2BS1_PARAN (Histone H2B.1, sperm OS=Parechinus angulosus PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 9.771e-32
Identity = 63/86 (73.26%), Postives = 78/86 (90.70%), Query Frame = 3 
Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            E+Y IYI+KVLKQVHPD GISS+AM +MNSF+ND+FE++A E+ RL  YN++ T++SRE+QTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   55 ESYGIYIYKVLKQVHPDTGISSRAMSVMNSFVNDVFERIAAEAGRLTTYNRRSTVSSREVQTAVRLLLPGELAKHAVSEGTKAVTK 140
[Close]
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B2_YEAST (Histone H2B.2 OS=Saccharomyces cerevisiae GN=HTB2 PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 9.771e-32
Identity = 65/86 (75.58%), Postives = 77/86 (89.53%), Query Frame = 3 
Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            ETY  YI+KVLKQ HPD GIS K+M I+NSF+NDIFE++A E+S+LA YNKK TI++REIQTAVRL+LPGELAKHAVSEGT+AVTK
Sbjct:   39 ETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTK 124
The following BLAST results are available for this feature:
BLAST of CK934352 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B1_KLULA4.386e-3276.74Histone H2B.1 OS=Kluyveromyces lactis GN=HTB1 PE=3... [more]
H2B_AGABI5.728e-3275.58Histone H2B OS=Agaricus bisporus GN=htbA PE=2 SV=3[more]
H2B1_SCHPO5.728e-3276.74Histone H2B-alpha OS=Schizosaccharomyces pombe GN=... [more]
H2B2_CANGA7.482e-3275.58Histone H2B.2 OS=Candida glabrata GN=HTB2 PE=3 SV=... [more]
H2B2_ASHGO7.482e-3275.58Histone H2B.2 OS=Ashbya gossypii GN=HTB2 PE=3 SV=3[more]
H2B1_CANGA7.482e-3275.58Histone H2B.1 OS=Candida glabrata GN=HTB1 PE=3 SV=... [more]
H2B1_ASHGO7.482e-3275.58Histone H2B.1 OS=Ashbya gossypii GN=HTB1 PE=3 SV=3[more]
H2BS1_PSAMI9.771e-3273.26Histone H2B.1, sperm OS=Psammechinus miliaris PE=1... [more]
H2BS1_PARAN9.771e-3273.26Histone H2B.1, sperm OS=Parechinus angulosus PE=1 ... [more]
H2B2_YEAST9.771e-3275.58Histone H2B.2 OS=Saccharomyces cerevisiae GN=HTB2 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004260_C03 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIIF_C03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934352 ID=CK934352; Name=CK934352; organism=Citrus sinensis; type=EST; length=649bp
GCGGGGGAAATCGAAATAACAAAGTAAAAANNNATCAAATGGCAGCGAAA
GCCGAGAAAAAGCCCGCCGAGAAGAAGCTGGCAGCCGAGAAGGCCCCTGC
TGCCGAGAAAAAATCGAGGGCTGAGAAGAAGCTTCCGAAAGACGGCGCCG
ACAAGAAGAAGAAGAAAGTGAAGAAGACCGTGGAGACCTACAAGATCTAC
ATATTCAAGGTGCTGAAGCAGGTGCATCCTGATATAGGAATCTCCAGCAA
GGCCATGGGTATCATGAACAGCTTTATCAACGATATCTTCGAGAAATTGG
CTCAGGAGTCGTCTCGTCTCGCGAGATACAACAAGAAGCCCACTATCACT
TCTCGTGAGATCCAGACTGCTGTTAGACTTGTCTTGCCCGGTGAGCTTGC
CAAGCATGCCGTTTCTGAAGGCACCAAGGCTGTCACTAAGTTTACTAGCT
CTTAATGAACCTATAGCTTCAATAATTCAATTAGTATCTTCTCTTTCTAG
CTTGGGCTCTGCAATTTTTGAGGTCCTGTTTCTTTTATTTTCCTTTTGGT
TGTAGATTTTCTCTTTTGTTTACTTTTTGTATCTACCCTACCCAACAACC
TAATCGAAGTTCTTTTTGCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top