CK934352

Overview
NameCK934352
Unique NameCK934352
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B1_YEAST (Histone H2B.1 OS=Saccharomyces cerevisiae GN=HTB1 PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 9.771e-32
Identity = 65/86 (75.58%), Postives = 77/86 (89.53%), Query Frame = 3
Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            ETY  YI+KVLKQ HPD GIS K+M I+NSF+NDIFE++A E+S+LA YNKK TI++REIQTAVRL+LPGELAKHAVSEGT+AVTK
Sbjct:   39 ETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTK 124          
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B_USTMA (Histone H2B OS=Ustilago maydis GN=HTB1 PE=3 SV=3)

HSP 1 Score: 136.346 bits (342), Expect = 1.276e-31
Identity = 64/86 (74.42%), Postives = 78/86 (90.70%), Query Frame = 3
Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            ETY  YI++VLKQVHPD GIS+KAM I+NSF+ DIFE++A E+S+LA YNKK TI+SREIQTAVRL+LPGEL+KHA+SEGTK+VTK
Sbjct:   52 ETYSTYIYRVLKQVHPDTGISNKAMAILNSFVQDIFERIATEASKLASYNKKSTISSREIQTAVRLILPGELSKHAISEGTKSVTK 137          
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2BS3_PARAN (Histone H2B.3, sperm OS=Parechinus angulosus PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 2.177e-31
Identity = 64/86 (74.42%), Postives = 78/86 (90.70%), Query Frame = 3
Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            E+Y IYI+KVLKQVHPD GISS+AM +MNSF+ND+FE++A E+SRL   N++ T++SREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   59 ESYGIYIYKVLKQVHPDTGISSRAMSVMNSFVNDVFERIASEASRLTSANRRSTVSSREIQTAVRLLLPGELAKHAVSEGTKAVTK 144          
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2BS2_PARAN (Histone H2B.2, sperm OS=Parechinus angulosus PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 3.713e-31
Identity = 64/86 (74.42%), Postives = 78/86 (90.70%), Query Frame = 3
Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            E+Y IYI+KVLKQVHPD GISS+AM +MNSF+ND+FE++A E+SRL   N++ T++SREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   54 ESYGIYIYKVLKQVHPDTGISSRAMSVMNSFVNDVFERIAGEASRLTSANRRSTVSSREIQTAVRLLLPGELAKHAVSEGTKAVTK 139          
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B2_PICGU (Histone H2B.2 OS=Pichia guilliermondii GN=HTB2 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.713e-31
Identity = 64/86 (74.42%), Postives = 75/86 (87.21%), Query Frame = 3
Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            ETY  YI+KVLKQ HPD GIS KAM IMNSF+NDIFE++A E+S+LA YNKK TI++REIQTAVRL+LPGELAKHAVSE T+ +TK
Sbjct:   38 ETYSSYIYKVLKQTHPDTGISQKAMSIMNSFVNDIFERVASEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEATRTITK 123          
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B1_PICGU (Histone H2B.1 OS=Pichia guilliermondii GN=HTB1 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.713e-31
Identity = 64/86 (74.42%), Postives = 75/86 (87.21%), Query Frame = 3
Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            ETY  YI+KVLKQ HPD GIS KAM IMNSF+NDIFE++A E+S+LA YNKK TI++REIQTAVRL+LPGELAKHAVSE T+ +TK
Sbjct:   38 ETYSSYIYKVLKQTHPDTGISQKAMSIMNSFVNDIFERVASEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEATRTITK 123          
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B_CRYNE (Histone H2B OS=Cryptococcus neoformans GN=HTB1 PE=3 SV=3)

HSP 1 Score: 134.035 bits (336), Expect = 6.334e-31
Identity = 63/87 (72.41%), Postives = 79/87 (90.80%), Query Frame = 3
Query:  180 VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            VE+Y  YI+KVLKQVHPD GIS+KAM I+NSF++DIFE++A E+S+LA YN + TI+SREIQT+VRL+LPGEL+KHA+SEGTKAVTK
Sbjct:   48 VESYSSYIYKVLKQVHPDTGISNKAMAILNSFVSDIFERIATEASKLASYNHRSTISSREIQTSVRLILPGELSKHAISEGTKAVTK 134          
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2BS2_STRPU (Histone H2B.2, sperm OS=Strongylocentrotus purpuratus PE=2 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 8.272e-31
Identity = 65/86 (75.58%), Postives = 77/86 (89.53%), Query Frame = 3
Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            E+Y IYI+KVLKQVHPD GISS+ M +MNSF+NDIF ++A E+SRL R N++ TI+SREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   54 ESYGIYIYKVLKQVHPDTGISSRGMSVMNSFVNDIFGRIAGEASRLTRANRRSTISSREIQTAVRLLLPGELAKHAVSEGTKAVTK 139          
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2BS2_PSAMI (Histone H2B.2, sperm OS=Psammechinus miliaris PE=1 SV=3)

HSP 1 Score: 133.65 bits (335), Expect = 8.272e-31
Identity = 64/86 (74.42%), Postives = 77/86 (89.53%), Query Frame = 3
Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            E+Y IYI+KVLKQVHPD GISS+ M +MNSF+ND+FE++A E+SRL   N++ TI+SREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   52 ESYGIYIYKVLKQVHPDTGISSRGMSVMNSFVNDVFERIAGEASRLTSANRRSTISSREIQTAVRLLLPGELAKHAVSEGTKAVTK 137          
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B_YARLI (Histone H2B OS=Yarrowia lipolytica GN=HTB1 PE=3 SV=3)

HSP 1 Score: 132.109 bits (331), Expect = 2.407e-30
Identity = 63/86 (73.26%), Postives = 74/86 (86.05%), Query Frame = 3
Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            ETY  YI+KVLKQ HPD GIS++AM IMNSF+NDIFE++A E+S+LA Y KK TITSREIQTAVRL+LPGELAKHA  +GT+AV K
Sbjct:   48 ETYSSYIYKVLKQTHPDTGISTRAMSIMNSFVNDIFERVATEASKLATYTKKSTITSREIQTAVRLILPGELAKHATGDGTRAVAK 133          
The following BLAST results are available for this feature:
BLAST of CK934352 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B1_YEAST9.771e-3275.58Histone H2B.1 OS=Saccharomyces cerevisiae GN=HTB1 ... [more]
H2B_USTMA1.276e-3174.42Histone H2B OS=Ustilago maydis GN=HTB1 PE=3 SV=3[more]
H2BS3_PARAN2.177e-3174.42Histone H2B.3, sperm OS=Parechinus angulosus PE=1 ... [more]
H2BS2_PARAN3.713e-3174.42Histone H2B.2, sperm OS=Parechinus angulosus PE=1 ... [more]
H2B2_PICGU3.713e-3174.42Histone H2B.2 OS=Pichia guilliermondii GN=HTB2 PE=... [more]
H2B1_PICGU3.713e-3174.42Histone H2B.1 OS=Pichia guilliermondii GN=HTB1 PE=... [more]
H2B_CRYNE6.334e-3172.41Histone H2B OS=Cryptococcus neoformans GN=HTB1 PE=... [more]
H2BS2_STRPU8.272e-3175.58Histone H2B.2, sperm OS=Strongylocentrotus purpura... [more]
H2BS2_PSAMI8.272e-3174.42Histone H2B.2, sperm OS=Psammechinus miliaris PE=1... [more]
H2B_YARLI2.407e-3073.26Histone H2B OS=Yarrowia lipolytica GN=HTB1 PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004260_C03 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIIF_C03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934352 ID=CK934352; Name=CK934352; organism=Citrus sinensis; type=EST; length=649bp
GCGGGGGAAATCGAAATAACAAAGTAAAAANNNATCAAATGGCAGCGAAA
GCCGAGAAAAAGCCCGCCGAGAAGAAGCTGGCAGCCGAGAAGGCCCCTGC
TGCCGAGAAAAAATCGAGGGCTGAGAAGAAGCTTCCGAAAGACGGCGCCG
ACAAGAAGAAGAAGAAAGTGAAGAAGACCGTGGAGACCTACAAGATCTAC
ATATTCAAGGTGCTGAAGCAGGTGCATCCTGATATAGGAATCTCCAGCAA
GGCCATGGGTATCATGAACAGCTTTATCAACGATATCTTCGAGAAATTGG
CTCAGGAGTCGTCTCGTCTCGCGAGATACAACAAGAAGCCCACTATCACT
TCTCGTGAGATCCAGACTGCTGTTAGACTTGTCTTGCCCGGTGAGCTTGC
CAAGCATGCCGTTTCTGAAGGCACCAAGGCTGTCACTAAGTTTACTAGCT
CTTAATGAACCTATAGCTTCAATAATTCAATTAGTATCTTCTCTTTCTAG
CTTGGGCTCTGCAATTTTTGAGGTCCTGTTTCTTTTATTTTCCTTTTGGT
TGTAGATTTTCTCTTTTGTTTACTTTTTGTATCTACCCTACCCAACAACC
TAATCGAAGTTCTTTTTGCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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