CK934352

Overview
NameCK934352
Unique NameCK934352
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934352_ssr153 microsatellite CK934352_ssr153:153..164. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12958 contig Csv1_Contig12958:7..655. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2BWT_HUMAN (Histone H2B type W-T OS=Homo sapiens GN=H2BFWT PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 4.406e-16
Identity = 40/86 (46.51%), Postives = 63/86 (73.26%), Query Frame = 3
Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            +++  Y  +VLKQVH  + +S +A+ +M+S ++DI +++A E+ RLAR  K+ TIT+ E + AVRL+LPG++ K A SEGTKAV +
Sbjct:   79 DSFATYFRRVLKQVHQGLSLSREAVSVMDSLVHDILDRIATEAGRLARSTKRQTITAWETRMAVRLLLPGQMGKLAESEGTKAVLR 164          
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2BFM_HUMAN (Histone H2B type F-M OS=Homo sapiens GN=H2BFM PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.755e-16
Identity = 39/86 (45.35%), Postives = 63/86 (73.26%), Query Frame = 3
Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            +++  Y  +VLKQVH  + +S +A+ +M+S I+DI +++A E+ +LA Y K+ TITSR+IQ AVRL+LPG++ K A ++GT A  +
Sbjct:  161 DSFTPYFPRVLKQVHQGLSLSQEAVSVMDSMIHDILDRIATEAGQLAHYTKRVTITSRDIQMAVRLLLPGKMGKLAEAQGTNAALR 246          
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2BV_BOVIN (Histone H2B subacrosomal variant OS=Bos taurus GN=SUBH2BV PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 1.085e-14
Identity = 39/87 (44.83%), Postives = 62/87 (71.26%), Query Frame = 3
Query:  180 VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            +  Y +YI +VLK+V P  GISS+ + I+N+ IND+FE+++ E+  L  Y K+ T+T  +I+ AV L+LP +LAK+AV+ G +AV +
Sbjct:   32 LRNYSLYINRVLKEVVPQKGISSRTIDIINTMINDMFERISTEACNLMYYRKRCTLTPEDIEKAVYLLLPEKLAKYAVAFGKEAVQR 118          
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2BV_MOUSE (Histone H2B subacrosomal variant OS=Mus musculus GN=Subh2bv PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 3.491e-13
Identity = 41/82 (50.00%), Postives = 58/82 (70.73%), Query Frame = 3
Query:  189 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAV 434
            Y +YI +VLK+V P+ GISS ++ IMN  INDIFE++A E+ +     K+ T+T  +IQ AV L+LP +LA  AV+ G+KAV
Sbjct:   36 YSLYINRVLKEVVPNRGISSYSVDIMNILINDIFERIATEACQQMFLRKRCTLTPGDIQQAVHLLLPKKLATLAVTFGSKAV 117          
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2BV1_DICDI (Histone H2B.v1 OS=Dictyostelium discoideum GN=H2Bv1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.467e-11
Identity = 34/81 (41.98%), Postives = 54/81 (66.67%), Query Frame = 3
Query:  195 IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVT 437
            IYI K++KQ++P   I  K++ I+ S I D    +  E+  L + + K T+++R++QT+VRL   GE+++HAVSEG K VT
Sbjct:   18 IYIKKLIKQINPACRIQVKSVQILTSLIRDTTISIMNEAFHLVQLSNKRTLSARDVQTSVRLCTVGEISRHAVSEGVKRVT 98          
The following BLAST results are available for this feature:
BLAST of CK934352 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2BWT_HUMAN4.406e-1646.51Histone H2B type W-T OS=Homo sapiens GN=H2BFWT PE=... [more]
H2BFM_HUMAN5.755e-1645.35Histone H2B type F-M OS=Homo sapiens GN=H2BFM PE=2... [more]
H2BV_BOVIN1.085e-1444.83Histone H2B subacrosomal variant OS=Bos taurus GN=... [more]
H2BV_MOUSE3.491e-1350.00Histone H2B subacrosomal variant OS=Mus musculus G... [more]
H2BV1_DICDI1.467e-1141.98Histone H2B.v1 OS=Dictyostelium discoideum GN=H2Bv... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004260_C03 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIIF_C03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934352 ID=CK934352; Name=CK934352; organism=Citrus sinensis; type=EST; length=649bp
GCGGGGGAAATCGAAATAACAAAGTAAAAANNNATCAAATGGCAGCGAAA
GCCGAGAAAAAGCCCGCCGAGAAGAAGCTGGCAGCCGAGAAGGCCCCTGC
TGCCGAGAAAAAATCGAGGGCTGAGAAGAAGCTTCCGAAAGACGGCGCCG
ACAAGAAGAAGAAGAAAGTGAAGAAGACCGTGGAGACCTACAAGATCTAC
ATATTCAAGGTGCTGAAGCAGGTGCATCCTGATATAGGAATCTCCAGCAA
GGCCATGGGTATCATGAACAGCTTTATCAACGATATCTTCGAGAAATTGG
CTCAGGAGTCGTCTCGTCTCGCGAGATACAACAAGAAGCCCACTATCACT
TCTCGTGAGATCCAGACTGCTGTTAGACTTGTCTTGCCCGGTGAGCTTGC
CAAGCATGCCGTTTCTGAAGGCACCAAGGCTGTCACTAAGTTTACTAGCT
CTTAATGAACCTATAGCTTCAATAATTCAATTAGTATCTTCTCTTTCTAG
CTTGGGCTCTGCAATTTTTGAGGTCCTGTTTCTTTTATTTTCCTTTTGGT
TGTAGATTTTCTCTTTTGTTTACTTTTTGTATCTACCCTACCCAACAACC
TAATCGAAGTTCTTTTTGCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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