CK934352

Overview
NameCK934352
Unique NameCK934352
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934352_ssr153 microsatellite CK934352_ssr153:153..164. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12958 contig Csv1_Contig12958:7..655. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B4_WHEAT (Histone H2B.4 OS=Triticum aestivum GN=TH153 PE=1 SV=3)

HSP 1 Score: 158.303 bits (399), Expect = 3.136e-38
Identity = 80/88 (90.91%), Postives = 85/88 (96.59%), Query Frame = 3
Query:  177 TVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            ++ETYKIYIFKVLKQVHPDIGISSKAM I NSFINDIFEKLA ES++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTK
Sbjct:   44 SMETYKIYIFKVLKQVHPDIGISSKAMSITNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTK 131          
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B4_CHLRE (Histone H2B.4 OS=Chlamydomonas reinhardtii PE=1 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 1.192e-37
Identity = 77/87 (88.51%), Postives = 84/87 (96.55%), Query Frame = 3
Query:  180 VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            VETYK+YI+KVLKQVHPD GISSKAM IMNSFINDIFEK+A E+S+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGTKAVTK
Sbjct:   63 VETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTK 149          
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B3_CHLRE (Histone H2B.3 OS=Chlamydomonas reinhardtii PE=1 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 1.192e-37
Identity = 77/87 (88.51%), Postives = 84/87 (96.55%), Query Frame = 3
Query:  180 VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            VETYK+YI+KVLKQVHPD GISSKAM IMNSFINDIFEK+A E+S+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGTKAVTK
Sbjct:   63 VETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTK 149          
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B2_CHLRE (Histone H2B.2 OS=Chlamydomonas reinhardtii PE=1 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 1.192e-37
Identity = 77/87 (88.51%), Postives = 84/87 (96.55%), Query Frame = 3
Query:  180 VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            VETYK+YI+KVLKQVHPD GISSKAM IMNSFINDIFEK+A E+S+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGTKAVTK
Sbjct:   66 VETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTK 152          
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B1_CHLRE (Histone H2B.1 OS=Chlamydomonas reinhardtii GN=H2B PE=1 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 1.192e-37
Identity = 77/87 (88.51%), Postives = 84/87 (96.55%), Query Frame = 3
Query:  180 VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            VETYK+YI+KVLKQVHPD GISSKAM IMNSFINDIFEK+A E+S+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGTKAVTK
Sbjct:   63 VETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTK 149          
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B4_VOLCA (Histone H2B.4 OS=Volvox carteri PE=3 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 3.467e-37
Identity = 76/86 (88.37%), Postives = 83/86 (96.51%), Query Frame = 3
Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            ETYK+YI+KVLKQVHPD GISSKAM IMNSFINDIFEK+A E+S+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGTKAVTK
Sbjct:   66 ETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTK 151          
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B3_VOLCA (Histone H2B.3 OS=Volvox carteri PE=3 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 3.467e-37
Identity = 76/86 (88.37%), Postives = 83/86 (96.51%), Query Frame = 3
Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            ETYK+YI+KVLKQVHPD GISSKAM IMNSFINDIFEK+A E+S+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGTKAVTK
Sbjct:   68 ETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTK 153          
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B_SALTR (Histone H2B OS=Salmo trutta PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.485e-35
Identity = 73/86 (84.88%), Postives = 81/86 (94.19%), Query Frame = 3
Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            E+Y IY++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A ESSRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   34 ESYAIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 119          
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B_PEA (Histone H2B (Fragments) OS=Pisum sativum GN=HIS2B PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.485e-35
Identity = 76/85 (89.41%), Postives = 79/85 (92.94%), Query Frame = 3
Query:  186 TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            T KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA E+SRLARYNKK TIT REIQTAVRL+LPGE+AKH VSE TKAVTK
Sbjct:   31 TVKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASEASRLARYNKKSTITPREIQTAVRLLLPGEVAKHKVSEATKAVTK 115          
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B_ONCMY (Histone H2B OS=Oncorhynchus mykiss PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.485e-35
Identity = 73/86 (84.88%), Postives = 81/86 (94.19%), Query Frame = 3
Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            E+Y IY++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A ESSRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   34 ESYAIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 119          
The following BLAST results are available for this feature:
BLAST of CK934352 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B4_WHEAT3.136e-3890.91Histone H2B.4 OS=Triticum aestivum GN=TH153 PE=1 S... [more]
H2B4_CHLRE1.192e-3788.51Histone H2B.4 OS=Chlamydomonas reinhardtii PE=1 SV... [more]
H2B3_CHLRE1.192e-3788.51Histone H2B.3 OS=Chlamydomonas reinhardtii PE=1 SV... [more]
H2B2_CHLRE1.192e-3788.51Histone H2B.2 OS=Chlamydomonas reinhardtii PE=1 SV... [more]
H2B1_CHLRE1.192e-3788.51Histone H2B.1 OS=Chlamydomonas reinhardtii GN=H2B ... [more]
H2B4_VOLCA3.467e-3788.37Histone H2B.4 OS=Volvox carteri PE=3 SV=3[more]
H2B3_VOLCA3.467e-3788.37Histone H2B.3 OS=Volvox carteri PE=3 SV=3[more]
H2B_SALTR2.485e-3584.88Histone H2B OS=Salmo trutta PE=1 SV=2[more]
H2B_PEA2.485e-3589.41Histone H2B (Fragments) OS=Pisum sativum GN=HIS2B ... [more]
H2B_ONCMY2.485e-3584.88Histone H2B OS=Oncorhynchus mykiss PE=1 SV=2[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004260_C03 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIIF_C03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934352 ID=CK934352; Name=CK934352; organism=Citrus sinensis; type=EST; length=649bp
GCGGGGGAAATCGAAATAACAAAGTAAAAANNNATCAAATGGCAGCGAAA
GCCGAGAAAAAGCCCGCCGAGAAGAAGCTGGCAGCCGAGAAGGCCCCTGC
TGCCGAGAAAAAATCGAGGGCTGAGAAGAAGCTTCCGAAAGACGGCGCCG
ACAAGAAGAAGAAGAAAGTGAAGAAGACCGTGGAGACCTACAAGATCTAC
ATATTCAAGGTGCTGAAGCAGGTGCATCCTGATATAGGAATCTCCAGCAA
GGCCATGGGTATCATGAACAGCTTTATCAACGATATCTTCGAGAAATTGG
CTCAGGAGTCGTCTCGTCTCGCGAGATACAACAAGAAGCCCACTATCACT
TCTCGTGAGATCCAGACTGCTGTTAGACTTGTCTTGCCCGGTGAGCTTGC
CAAGCATGCCGTTTCTGAAGGCACCAAGGCTGTCACTAAGTTTACTAGCT
CTTAATGAACCTATAGCTTCAATAATTCAATTAGTATCTTCTCTTTCTAG
CTTGGGCTCTGCAATTTTTGAGGTCCTGTTTCTTTTATTTTCCTTTTGGT
TGTAGATTTTCTCTTTTGTTTACTTTTTGTATCTACCCTACCCAACAACC
TAATCGAAGTTCTTTTTGCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top