CK934352 | Citrus Genome Database

Overview


Name	CK934352
Unique Name	CK934352
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	649

Libraries


Library Name	Type
Developing fruit peel at 38 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
CK934352_ssr153	microsatellite	CK934352_ssr153:153..164.	BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12958	contig	Csv1_Contig12958:7..655.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B1D_HUMAN (Histone H2B type 1-D OS=Homo sapiens GN=HIST1H2BD PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 5.536e-35
Identity = 71/86 (82.56%), Postives = 81/86 (94.19%), Query Frame = 3

Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 121

[Close]

BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B1C_MOUSE (Histone H2B type 1-C/E/G OS=Mus musculus GN=Hist1h2bc PE=1 SV=3)

HSP 1 Score: 147.517 bits (371), Expect = 5.536e-35
Identity = 71/86 (82.56%), Postives = 81/86 (94.19%), Query Frame = 3

Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 121

[Close]

BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B1C_HUMAN (Histone H2B type 1-C/E/F/G/I OS=Homo sapiens GN=HIST1H2BC PE=1 SV=3)

HSP 1 Score: 147.517 bits (371), Expect = 5.536e-35
Identity = 71/86 (82.56%), Postives = 81/86 (94.19%), Query Frame = 3

Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 121

[Close]

BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B_CHITH (Histone H2B OS=Chironomus thummi thummi PE=3 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 9.442e-35
Identity = 72/86 (83.72%), Postives = 80/86 (93.02%), Query Frame = 3

Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            E+Y IYIFKVLKQVHPD G+SSKAM IMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   35 ESYAIYIFKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 120

[Close]

BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B12_XENLA (Histone H2B 1.2 OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 9.442e-35
Identity = 71/86 (82.56%), Postives = 81/86 (94.19%), Query Frame = 3

Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            E+Y IY++KV+KQVHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   36 ESYAIYVYKVMKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 121

[Close]

BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B_PLADU (Histone H2B OS=Platynereis dumerilii PE=3 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.233e-34
Identity = 72/86 (83.72%), Postives = 80/86 (93.02%), Query Frame = 3

Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   33 ESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 118

[Close]

BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B_LITVA (Histone H2B (Fragments) OS=Litopenaeus vannamei PE=1 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.233e-34
Identity = 72/86 (83.72%), Postives = 80/86 (93.02%), Query Frame = 3

Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   26 ESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 111

[Close]

BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B_ACRFO (Histone H2B OS=Acropora formosa PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.233e-34
Identity = 72/86 (83.72%), Postives = 81/86 (94.19%), Query Frame = 3

Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            E+Y IYI+KVLKQVHPD GISSKAMGIMNSF+NDIFE++A ESSRL+ YNKK TI+SREIQTA+RL+LPGELAKHAVSEGTKAVTK
Sbjct:   35 ESYAIYIYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAVESSRLSLYNKKATISSREIQTAIRLLLPGELAKHAVSEGTKAVTK 120

[Close]

BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B6_WHEAT (Histone H2B.6 OS=Triticum aestivum GN=TH123 PE=1 SV=3)

HSP 1 Score: 146.362 bits (368), Expect = 1.233e-34
Identity = 73/86 (84.88%), Postives = 81/86 (94.19%), Query Frame = 3

Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            ETYKIYIFKVLKQ+ P++GISSK+M I+NS INDIFEKLA ES++LARYNKKPTITSREIQTAVRLV PGELAKHAVSEGTKAVT+
Sbjct:   32 ETYKIYIFKVLKQIDPNMGISSKSMSIINSIINDIFEKLAGESAKLARYNKKPTITSREIQTAVRLVFPGELAKHAVSEGTKAVTR 117

[Close]

BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B3_TIGCA (Histone H2B.3 OS=Tigriopus californicus PE=3 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.233e-34
Identity = 72/86 (83.72%), Postives = 80/86 (93.02%), Query Frame = 3

Query:  183 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 118

The following BLAST results are available for this feature:

BLAST of CK934352 vs. ExPASy Swiss-Prot

BLAST of CK934352 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205


Match Name	E-value	Identity	Description
H2B1D_HUMAN	5.536e-35	82.56	Histone H2B type 1-D OS=Homo sapiens GN=HIST1H2BD ...	[more]
H2B1C_MOUSE	5.536e-35	82.56	Histone H2B type 1-C/E/G OS=Mus musculus GN=Hist1h...	[more]
H2B1C_HUMAN	5.536e-35	82.56	Histone H2B type 1-C/E/F/G/I OS=Homo sapiens GN=HI...	[more]
H2B_CHITH	9.442e-35	83.72	Histone H2B OS=Chironomus thummi thummi PE=3 SV=2	[more]
H2B12_XENLA	9.442e-35	82.56	Histone H2B 1.2 OS=Xenopus laevis PE=1 SV=2	[more]
H2B_PLADU	1.233e-34	83.72	Histone H2B OS=Platynereis dumerilii PE=3 SV=2	[more]
H2B_LITVA	1.233e-34	83.72	Histone H2B (Fragments) OS=Litopenaeus vannamei PE...	[more]
H2B_ACRFO	1.233e-34	83.72	Histone H2B OS=Acropora formosa PE=3 SV=1	[more]
H2B6_WHEAT	1.233e-34	84.88	Histone H2B.6 OS=Triticum aestivum GN=TH123 PE=1 S...	[more]
H2B3_TIGCA	1.233e-34	83.72	Histone H2B.3 OS=Tigriopus californicus PE=3 SV=2	[more]

Pages

Properties


Property Name	Value
Genbank description	CGF1004260_C03 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIIF_C03 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK934352 ID=CK934352; Name=CK934352; organism=Citrus sinensis; type=EST; length=649bp
GCGGGGGAAATCGAAATAACAAAGTAAAAANNNATCAAATGGCAGCGAAA
GCCGAGAAAAAGCCCGCCGAGAAGAAGCTGGCAGCCGAGAAGGCCCCTGC
TGCCGAGAAAAAATCGAGGGCTGAGAAGAAGCTTCCGAAAGACGGCGCCG
ACAAGAAGAAGAAGAAAGTGAAGAAGACCGTGGAGACCTACAAGATCTAC
ATATTCAAGGTGCTGAAGCAGGTGCATCCTGATATAGGAATCTCCAGCAA
GGCCATGGGTATCATGAACAGCTTTATCAACGATATCTTCGAGAAATTGG
CTCAGGAGTCGTCTCGTCTCGCGAGATACAACAAGAAGCCCACTATCACT
TCTCGTGAGATCCAGACTGCTGTTAGACTTGTCTTGCCCGGTGAGCTTGC
CAAGCATGCCGTTTCTGAAGGCACCAAGGCTGTCACTAAGTTTACTAGCT
CTTAATGAACCTATAGCTTCAATAATTCAATTAGTATCTTCTCTTTCTAG
CTTGGGCTCTGCAATTTTTGAGGTCCTGTTTCTTTTATTTTCCTTTTGGT
TGTAGATTTTCTCTTTTGTTTACTTTTTGTATCTACCCTACCCAACAACC
TAATCGAAGTTCTTTTTGCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA