CK934358

Overview
NameCK934358
Unique NameCK934358
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length953
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9230 contig Csv1_Contig9230:39..992. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934358 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.628e-27
Identity = 97/260 (37.31%), Postives = 131/260 (50.38%), Query Frame = 3
Query:  150 SPTGSSRKGSFVVR----AASTPPVKQGA-----DRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGLIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-ISPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 866
            SP+ S   G+  V     A+   PV  G+     DR  +    S +S SYL G  PGDYG+D  GLS DPE      E       EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G    +    Y GGS DP              +D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:   20 SPSSSEVTGNGKVTMRKTASKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNREL------EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG----GPLGE---VVDPLYPGGSFDPL----------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254          
BLAST of CK934358 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 2.126e-27
Identity = 95/256 (37.11%), Postives = 129/256 (50.39%), Query Frame = 3
Query:  141 SAQSPTGSSRKG--SFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGLIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-ISPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 866
            SA   TG+ R      V +  ++     G DR  +    S +S SYL G  PGDYG+D  GLS DPE      E       EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G    +    Y GGS DP              +D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:   23 SAPEITGNGRVSMRKTVAKPVASSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNREL------EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAG----GPLGE---VVDPLYPGGSFDPL----------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253          
BLAST of CK934358 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.626e-27
Identity = 91/237 (38.40%), Postives = 119/237 (50.21%), Query Frame = 3
Query:  192 AASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGLIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-ISPAGTYNYWADPY--------TLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 866
            AAS      G DR ++    S +  SYL G  PGDYG+D  GLS DPE      E       EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y   P          ++  ++ LMG  E  R       G +G    +    Y GG+ DP               D  +  D K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:   55 AASIDSPWYGPDRVMYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNREL------EVIHSRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAG----GPLGE---VTDPIYPGGNFDPL----------GLADDPDAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 266          
BLAST of CK934358 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.626e-27
Identity = 89/228 (39.04%), Postives = 117/228 (51.32%), Query Frame = 3
Query:  219 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGLIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-ISPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 866
            G+DRPL+    S    SYL G  PGDYG+D  GLS DPE      E       EVI+ R+AMLGA+G + PE+L K G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G    +    Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADP  NN
Sbjct:   51 GSDRPLYLGPFSGSPPSYLSGEFPGDYGWDTAGLSADPETFAKNREL------EVIHSRWAMLGALGCVTPELLAKNGVKFGEAV--WFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAG----GPLGE---VEDPIYPGGSFDPL----------GLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAVNN 253          
BLAST of CK934358 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.735e-27
Identity = 91/237 (38.40%), Postives = 119/237 (50.21%), Query Frame = 3
Query:  192 AASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGLIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-ISPAGTYNYWADPY--------TLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 866
            AAS      G DR L+    S +  SYL G  PGDYG+D  GLS DPE      E       EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y   P          ++  ++ LMG  E  R       G +G    +    Y GG+ DP               D  +  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:   55 AASIDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNREL------EVIHSRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAG----GPLGE---VTDPIYPGGNFDPL----------GLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 266          
BLAST of CK934358 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 6.184e-27
Identity = 89/228 (39.04%), Postives = 118/228 (51.75%), Query Frame = 3
Query:  219 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGLIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-ISPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 866
            G DR  +    S +S SYL G  PGDYG+D  GLS DPE      E       EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G    +    Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:   53 GPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNREL------EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAG----GPLGE---VVDPLYPGGSFDPL----------GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255          
BLAST of CK934358 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 6.184e-27
Identity = 94/258 (36.43%), Postives = 129/258 (50.00%), Query Frame = 3
Query:  150 SPTGSSRKGS--FVVRAASTPPVKQGA-----DRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGLIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-ISPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 866
            SP     +G+  F +R  ++  V  G+     DR  +    S +  SYL G  PGDYG+D  GLS DPE      E       EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G    +    Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:   11 SPNAPEIQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNREL------EVIHSRWAMLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG----GPLGE---VTDPIYPGGSFDPL----------GLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 243          
BLAST of CK934358 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.055e-26
Identity = 88/228 (38.60%), Postives = 119/228 (52.19%), Query Frame = 3
Query:  219 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGLIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-ISPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 866
            G DR  +    S ++ SYL G  PGDYG+D  GLS DPE      E       EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P         +++  ++ LMG  E  R       G +G    +    Y GGS DP              +D +   + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:   50 GPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNREL------EVIHSRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAG----GPLGE---IVDPLYPGGSFDPL----------GLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252          
BLAST of CK934358 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.378e-26
Identity = 88/228 (38.60%), Postives = 118/228 (51.75%), Query Frame = 3
Query:  219 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGLIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-ISPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 866
            G DR  +    S ++ SYL G  PGDYG+D  GLS DPE      E       EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G    +    Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP  NL+DHLADPVNNN
Sbjct:   53 GPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNREL------EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAG----GPLGE---VTDPLYPGGSFDPL----------GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVNNN 255          
BLAST of CK934358 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.378e-26
Identity = 88/228 (38.60%), Postives = 118/228 (51.75%), Query Frame = 3
Query:  219 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGLIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-ISPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 866
            G DR  +    S +S SYL G  PGDYG+D  GLS DPE      E       EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G    +    Y GGS DP              +D ++  + K+K +KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:   53 GPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNREL------EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG----GPLGE---VVDPLYPGGSFDPL----------GLAEDPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255          
The following BLAST results are available for this feature:
BLAST of CK934358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
CB21_TOBAC1.628e-2737.31Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB22_TOBAC2.126e-2737.11Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB2A_PYRPY3.626e-2738.40Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB23_POLMU3.626e-2739.04Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB2A_PINSY4.735e-2738.40Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB2A_SPIOL6.184e-2739.04Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_CUCSA6.184e-2736.43Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_APIGR1.055e-2638.60Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB27_TOBAC1.378e-2638.60Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB25_TOBAC1.378e-2638.60Chlorophyll a-b binding protein 50, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004260_A11 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIIF_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934358 ID=CK934358; Name=CK934358; organism=Citrus sinensis; type=EST; length=953bp
GGGGGAAGCACTTTTAATTTATCGTATTGAAGTAGAGAAACAAGAGGAAA
AAAGAAAATTAAAAAATGGCAACCCAAGCTTTGGTTTCATCGTCTCTTAC
ATCTTCAGTGGAGACTGCGAGACAAATTCTTGGAGCAAGATCAGCTCAAT
CCCCAACTGGGTCATCAAGAAAAGGTTCCTTTGTTGTTAGGGCAGCTTCT
ACTCCTCCTGTTAAGCAAGGAGCAGACAGACCGTTGTGGTTTGCATCCAA
ACAAAGCCTTTCATACTTGGATGGCAGCCTCCCCGGAGACTATGGATTCG
ACCCACTTGGTCTCTCAGACCCTGAAGGCACAGGAGGGCTCATTGAGCCA
AAATGGCTGGCCTACGGCGAGGTCATCAACGGTCGTTATGCCATGTTGGG
AGCTGTGGGAGCCATTGCACCGGAGATTCTTGGCAAGGCAGGCCTCATTC
CGCAAGAAACTGCCCTGGCCTGGTTCCAAACCGGTGTGATCTCCCCAGCG
GGAACATACAACTACTGGGCAGACCCTTACACACTTTTCGTCCTGGAAAT
GGCACTCATGGGATTTGCCGAGCACCGGAGATTCCAAGACTGGGCAAATC
CAGGATCAATGGGCAGGCAATACTTCCTCGGATTCGAGAAATACTTGGGA
GGATCCGGCGATCCGGCTTACCCTGGAGGACCTCTATTCAACCCTCTGGG
TCTTGGGAAAGATGAGAAGTCAATGAAGGATTTCAAGCTCAAGGAAGTGA
AGAATGGAAGATTGGCAATGTTGGCAATCTTGGGTTACTTTGTTCAAGGT
CTTGTTACAGGAGTTGGGCCTTACCAGAACCTATTGGATCACTTGGCTGA
TCCTGTAAACAACAATGTTTTGACTAGCCTCAAGTTTCACTGAGAGAGAA
ATTTCTGATCATTGCTTGGGATTATATATTCCAAGCCTTNNNATCCCCCA
CTN
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