CK934358

Overview
NameCK934358
Unique NameCK934358
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length953
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9230 contig Csv1_Contig9230:39..992. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934358 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.378e-26
Identity = 92/245 (37.55%), Postives = 124/245 (50.61%), Query Frame = 3
Query:  168 RKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGLIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-ISPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 866
            RK +   +  S+     G DR  +    S +S SYL G  PGDYG+D  GLS DPE      E       EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R         +G    +    Y GGS DP              +D ++  + K+KE+KNGRLAM ++ G+FVQ LVTG GP +NL DHLADPVNNN
Sbjct:   35 RKTANKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNREL------EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG----EPLGE---VVDPLYPGGSFDPL----------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQALVTGKGPLENLADHLADPVNNN 254          
BLAST of CK934358 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.799e-26
Identity = 90/237 (37.97%), Postives = 122/237 (51.48%), Query Frame = 3
Query:  192 AASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGLIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-ISPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 866
            AA++     G DR L+    S +  SYL G  PGDYG+D  GLS DPE      E       EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G    +    Y GGS DP               D ++  + K+KE+K GRLAML++ G+FVQ +VTG GP +NL DH+ADPVNNN
Sbjct:   42 AAASGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNREL------EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG----GPLGE---VVDPLYPGGSFDPL----------GLADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLADHIADPVNNN 253          
BLAST of CK934358 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.799e-26
Identity = 88/229 (38.43%), Postives = 119/229 (51.97%), Query Frame = 3
Query:  219 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGLIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-ISPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYL-GGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 866
            G DRP +    S+ + SYL G  PGDYG+D   +S DPE      E       EVI+ R+AMLGA+G + PE+L K GL   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G++G     G +  L GG+ DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct:   52 GPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNREL------EVIHCRWAMLGALGCVFPELLAKNGLKFGEAV--WFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYR----VGGGTLGE----GLDPLLPGGAFDPL----------GLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANN 254          
BLAST of CK934358 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.350e-26
Identity = 90/245 (36.73%), Postives = 122/245 (49.80%), Query Frame = 3
Query:  168 RKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGLIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-ISPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 866
            RK     + AS+     G DR  +    S ++ SYL G  P DYG+D  GLS DPE      E       EVI+ R+AMLGA+G + PE+  + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G         Y GGS DP              +D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:   36 RKTVTKAKPASSSSPWYGPDRVKYLGPFSGEAPSYLTGEFPSDYGWDTAGLSADPETFAKNREL------EVIHCRWAMLGALGCVFPELFARNGIKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG----GPLGEVID---PLYPGGSFDPL----------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255          
BLAST of CK934358 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.350e-26
Identity = 87/228 (38.16%), Postives = 117/228 (51.32%), Query Frame = 3
Query:  219 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGLIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-ISPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 866
            G DR  +    S +  SYL G  PGDYG+D  GLS DPE      E       EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G    +    Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPVNNN
Sbjct:   48 GPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNREL------EVIHSRWAMLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG----GPLGE---VVDPLYPGGSFDPL----------GLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 250          
BLAST of CK934358 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 3.069e-26
Identity = 89/245 (36.33%), Postives = 125/245 (51.02%), Query Frame = 3
Query:  168 RKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGLIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-ISPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 866
            RK +   +  S+     G+DR L+    S +  SYL G  PGDYG+D  GLS DPE      E       EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G    +    Y GGS DP              +  ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP ++L DH+ADPVNNN
Sbjct:   35 RKTAAKAKQVSSSSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNREL------EVIHCRWAMLGALGCVFPELLARNGVKFGEAG--WFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAG----GPLGE---IVDPLYPGGSFDPL----------GLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVNNN 254          
BLAST of CK934358 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 4.009e-26
Identity = 88/213 (41.31%), Postives = 113/213 (53.05%), Query Frame = 3
Query:  264 YLDGSLPGDYGFDPLGLSD-PEGTGGLIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVISPAG-TYNYWAD--PYTLF---VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYL--GGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 875
            YL+G + GDYG+DP GL   PE        K+ A+ E+I+ R+AMLGA G I PE L K G      A+ WF+TG +   G T NY+    P  L    V E+ L+G AE+ R  +            L FE  L  GG  DP              KD +     K+KE+KNGRLAM A+LG+F+Q  VTG GP +NL  HL+DP  NN+LT
Sbjct:   84 YLNGEVAGDYGYDPFGLGKKPENFA-----KYQAF-ELIHARWAMLGAAGFIIPEALNKYGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNG-----------LDFEDKLHPGGPFDPL----------GLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLT 268          
BLAST of CK934358 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 5.235e-26
Identity = 87/228 (38.16%), Postives = 116/228 (50.88%), Query Frame = 3
Query:  219 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGLIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-ISPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 866
            G DR  +    S ++ SYL G  PGDYG+D  GLS DPE      E       EVI+ R+AMLGA+G + PE+  + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G         Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:   52 GPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNREL------EVIHCRWAMLGALGCVFPELFARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG----GPLGEVID---PLYPGGSFDPL----------GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254          
BLAST of CK934358 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.838e-26
Identity = 85/217 (39.17%), Postives = 114/217 (52.53%), Query Frame = 3
Query:  246 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGLIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-ISPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 866
            S +S SYL G  PGDYG+D  GLS DPE      E       EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R         +G    +    Y GGS DP              +D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:   64 SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNREL------EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG----EPLGE---VVDPLYPGGSFDPL----------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255          
BLAST of CK934358 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 8.930e-26
Identity = 89/240 (37.08%), Postives = 120/240 (50.00%), Query Frame = 3
Query:  183 VVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGLIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-ISPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 866
            V +  S+     G DR  +    S +  SYL G  PGDYG+D  GLS DPE      E       EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G    +    Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLA PVNNN
Sbjct:   37 VTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNREL------EVIHSRWAMLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAG----GPLGE---VTDPIYPGGSFDPL----------GLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAGPVNNN 251          
The following BLAST results are available for this feature:
BLAST of CK934358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
CB25_NICPL1.378e-2637.55Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB22_MAIZE1.799e-2637.97Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PINTH1.799e-2638.43Chlorophyll a-b binding protein type I, chloroplas... [more]
CB23_PETSP2.350e-2636.73Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB21_MAIZE2.350e-2638.16Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_WHEAT3.069e-2636.33Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB26_ARATH4.009e-2641.31Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB24_PETSP5.235e-2638.16Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB23_NICPL6.838e-2639.17Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB23_SOYBN8.930e-2637.08Chlorophyll a-b binding protein 3, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004260_A11 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIIF_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934358 ID=CK934358; Name=CK934358; organism=Citrus sinensis; type=EST; length=953bp
GGGGGAAGCACTTTTAATTTATCGTATTGAAGTAGAGAAACAAGAGGAAA
AAAGAAAATTAAAAAATGGCAACCCAAGCTTTGGTTTCATCGTCTCTTAC
ATCTTCAGTGGAGACTGCGAGACAAATTCTTGGAGCAAGATCAGCTCAAT
CCCCAACTGGGTCATCAAGAAAAGGTTCCTTTGTTGTTAGGGCAGCTTCT
ACTCCTCCTGTTAAGCAAGGAGCAGACAGACCGTTGTGGTTTGCATCCAA
ACAAAGCCTTTCATACTTGGATGGCAGCCTCCCCGGAGACTATGGATTCG
ACCCACTTGGTCTCTCAGACCCTGAAGGCACAGGAGGGCTCATTGAGCCA
AAATGGCTGGCCTACGGCGAGGTCATCAACGGTCGTTATGCCATGTTGGG
AGCTGTGGGAGCCATTGCACCGGAGATTCTTGGCAAGGCAGGCCTCATTC
CGCAAGAAACTGCCCTGGCCTGGTTCCAAACCGGTGTGATCTCCCCAGCG
GGAACATACAACTACTGGGCAGACCCTTACACACTTTTCGTCCTGGAAAT
GGCACTCATGGGATTTGCCGAGCACCGGAGATTCCAAGACTGGGCAAATC
CAGGATCAATGGGCAGGCAATACTTCCTCGGATTCGAGAAATACTTGGGA
GGATCCGGCGATCCGGCTTACCCTGGAGGACCTCTATTCAACCCTCTGGG
TCTTGGGAAAGATGAGAAGTCAATGAAGGATTTCAAGCTCAAGGAAGTGA
AGAATGGAAGATTGGCAATGTTGGCAATCTTGGGTTACTTTGTTCAAGGT
CTTGTTACAGGAGTTGGGCCTTACCAGAACCTATTGGATCACTTGGCTGA
TCCTGTAAACAACAATGTTTTGACTAGCCTCAAGTTTCACTGAGAGAGAA
ATTTCTGATCATTGCTTGGGATTATATATTCCAAGCCTTNNNATCCCCCA
CTN
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