CK934358

Overview
NameCK934358
Unique NameCK934358
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length953
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9230 contig Csv1_Contig9230:39..992. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934358 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 6.400e-24
Identity = 84/251 (33.47%), Postives = 120/251 (47.81%), Query Frame = 3
Query:  129 LGARSAQSPTGSSRKGS--FVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGLIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVISPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 869
            +G  S  +P+  S +    F   A ++  V   A+   WF  +   ++LDGS PGD+GFDPLGL+  PE      E       E+ + R+AML   G + PE LG    +  +   A    G  +  G    W +  T+  +E   + FAE +R  +  +P           +KY GG+ DP              KD    ++ KLKE+KNGRLAMLA +G+ V Q    G GP +NL  HLADP +NN+
Sbjct:   13 VGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAE---WFPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKE------SEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAA-LPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTME-KDPEK---------KKYPGGAFDP----------LGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 233          
BLAST of CK934358 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.176e-23
Identity = 84/228 (36.84%), Postives = 112/228 (49.12%), Query Frame = 3
Query:  219 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGLIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-ISPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 866
            GADR L+    S    SYL G  PGDYG+D  GLS DPE      E       EVI+ R+A+   +G + PE+L + G+   E    WF+ G  I   G  ++  +P          ++  ++ LMG  E             GR   +    YLGGS DP               D +   + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL DPVNNN
Sbjct:   50 GADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEGLSADPETFAKNREL------EVIHCRWAIAVGLGCVFPELLARNGVKFGEGV--WFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAG-------GRLGEVVDPLYLGGSFDPL----------GLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNN 252          
BLAST of CK934358 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.176e-23
Identity = 84/230 (36.52%), Postives = 113/230 (49.13%), Query Frame = 3
Query:  219 GADRPLW---FASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGLIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-ISPAGTYNYWADPYTLFV--------LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 866
            G +R  W   ++   + +YL G  PGDYG+D  GLS DPE      E       E+I+ R+AMLGA+G   PE+L K+G    E    WF+ G  I   G  +Y  +P  +          +++ LMG  E  R     N G  G     G +  Y G S DP               D  +  + K+KE+KNGRLA  ++ G+FVQ +VTG GP QNL DHLA+P  NN
Sbjct:   38 GPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYREL------ELIHARWAMLGALGCQTPELLAKSGTKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYR----VNGGPAGE----GLDPLYPGESFDPL----------GLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNN 241          
BLAST of CK934358 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.418e-23
Identity = 87/248 (35.08%), Postives = 117/248 (47.18%), Query Frame = 3
Query:  162 SSRKGSFVV-RAASTPPVKQGADRPL-WFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGLIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-ISPAGTYNYWADPYTL--------FVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 866
            S++KG+  V +++S+     G D    W    Q      G  PGDYG+D  GLS DPE      E       E+I+ R  +LGA+G + PE+L     I    A  WF+ G  I   G  NY  +P  +          +++ LMG  E  R     N G  G     G +  Y G + DP               D  +  + K+KE+KNGRLAM A LG+FVQ +VTG GP +NL DHLA+P  NN
Sbjct:   39 STKKGAKAVSKSSSSANQFYGPDATSGWDLQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYREL------ELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYR----VNGGPAGE----GLDPLYPGEAFDPL----------GLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENN 262          
BLAST of CK934358 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 7.076e-23
Identity = 84/246 (34.15%), Postives = 113/246 (45.93%), Query Frame = 3
Query:  162 SSRKGSFVVRAASTPPVKQGADRPL--------WFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGLIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVISPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 869
            SS K  F    A+  PV  GA   +        W   +   SYLDGS PGD+GFD LGL + P       E       E+I+ R+AML   G I PE LG    +  +   A    G  +  G    W    T+  +E   + F EH+R  +  +            +KY GG+ DP              KD    ++ K+KE+KNGRLA+LAI+G+ V Q    G GP +NL  HLADP +NN+
Sbjct:   20 SSTKSKF----AAAMPVYVGATNFMSRFSMSADWMPGQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKE------SELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAA-IPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEK----------KKYPGGAFDPL----------GYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNNI 234          
BLAST of CK934358 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 8.650e-21
Identity = 67/175 (38.29%), Postives = 94/175 (53.71%), Query Frame = 3
Query:  369 EVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-ISPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 866
            EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G    +    Y GGS DP               D +++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:   89 EVIHSRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAG----GPLGE---VTDPIYPGGSFDPL----------GLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 244          
BLAST of CK934358 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.018e-18
Identity = 81/260 (31.15%), Postives = 113/260 (43.46%), Query Frame = 3
Query:  225 DRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEG-----------------TGGLI--------------EPKWLAYG-------EVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVISPAGTYNYWADPY-----TLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLG-FEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 872
            DRPLW+    S  +LDGSL GDYGFDP GL  P                    G +I              +P    +G       E+I+GR+AML  +GA++ E L         T + W   G +      +Y   P      TL  +E+ ++G+ E   FQ  A   S  R Y  G F   LG + DP                EK+ +  +L E+K+ RLAM+A LG+ VQ   TG GP  N   HL+DP++  ++
Sbjct:   54 DRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWL---------TGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIE---FQRNAELDSEKRLYPGGKFFDPLGLAADP----------------EKTAQ-LQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTII 284          
BLAST of CK934358 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.802e-17
Identity = 72/219 (32.88%), Postives = 99/219 (45.21%), Query Frame = 3
Query:  261 SYLDGSLPGDYGFDPLGLSDPEGTGGLIEPKWLAYG---EVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-ISPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 881
            SYL G  PGDYG+D  GLS          P+  A     EVI+ R AM  A+G I PE+L   G    E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   DP Y            +D ++  + K+KE+KNGRLAM ++ G+FVQ +V+     +NL DHL   VNNN L+++
Sbjct:   71 SYLTGEFPGDYGWDTAGLS--------AYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIARGP----------------LGEVTDPLYPGSFDSLGLA--EDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNV 261          
BLAST of CK934358 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.094e-15
Identity = 73/219 (33.33%), Postives = 94/219 (42.92%), Query Frame = 3
Query:  234 LWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGLIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVISPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAN--PGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 881
            LWF + +  + L G  P D GFDPL L+ DP+    +         EV +GR AML  VG I PE+LGK          AWF+ G            D   L  + MA+    E+ R Q   N   G + R Y  GF        DP                  +    +  EVKNGRLA+ A+ G   Q L TG  P  NL  HLA+P+  N+ T+L
Sbjct:  189 LWFPNAEPPALLTGEYPADRGFDPLNLAADPDVYARM------RVAEVFHGRLAMLCTVGCIVPELLGKG---------AWFEAGDS---------VDGLKLGFITMAIAAPTEYWRGQGGFNWQKGELDRSY-PGF--------DPL---------------NLTTDYTRAAEVKNGRLALTAVAGLTAQYLATGESPLANLSAHLANPIGANITTNL 359          
BLAST of CK934358 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 7.092e-15
Identity = 72/244 (29.51%), Postives = 108/244 (44.26%), Query Frame = 3
Query:  111 ETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGLIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVISPA-GTYNYWADPYTLFVLEMALMGFAEHRRFQD----------WANPGSMGRQYF---LGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQ 797
            ++++ +L   S      S+     VV AA+  P K          +     +LDGSLPGD+GFDPLGL  DP         KW    E+I+GR+AML  +G      +G+A      T + WF+ G    A   +++     TL   ++ LMG+ E +R+ D          WA P S   + F    G + Y GG                   D   ++  KL E+K+ RLAMLA+L ++ +
Sbjct:   24 KSSQSLLFVNSKVGAGVSTTSRKLVVVAAAAAPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFL------KWYREAELIHGRWAMLAVLGI----FVGQAW-----TGIPWFEAGADPGAVAPFSFG----TLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFE 248          
The following BLAST results are available for this feature:
BLAST of CK934358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
CB121_HORVU6.400e-2433.47Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB48_MAIZE3.176e-2336.84Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB2_CHLRE3.176e-2336.52Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNSA5.418e-2335.08Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB11_SOLLC7.076e-2334.15Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB22_SOYBN8.650e-2138.29Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB4A_ARATH4.018e-1831.15Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB2_MALDO5.802e-1732.88Chlorophyll a-b binding protein AB10, chloroplasti... [more]
LH18_EUGGR1.094e-1533.33Light-harvesting complex I LH38 proteins (Fragment... [more]
CB4_SPIOL7.092e-1529.51Chlorophyll a-b binding protein CP24, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004260_A11 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIIF_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934358 ID=CK934358; Name=CK934358; organism=Citrus sinensis; type=EST; length=953bp
GGGGGAAGCACTTTTAATTTATCGTATTGAAGTAGAGAAACAAGAGGAAA
AAAGAAAATTAAAAAATGGCAACCCAAGCTTTGGTTTCATCGTCTCTTAC
ATCTTCAGTGGAGACTGCGAGACAAATTCTTGGAGCAAGATCAGCTCAAT
CCCCAACTGGGTCATCAAGAAAAGGTTCCTTTGTTGTTAGGGCAGCTTCT
ACTCCTCCTGTTAAGCAAGGAGCAGACAGACCGTTGTGGTTTGCATCCAA
ACAAAGCCTTTCATACTTGGATGGCAGCCTCCCCGGAGACTATGGATTCG
ACCCACTTGGTCTCTCAGACCCTGAAGGCACAGGAGGGCTCATTGAGCCA
AAATGGCTGGCCTACGGCGAGGTCATCAACGGTCGTTATGCCATGTTGGG
AGCTGTGGGAGCCATTGCACCGGAGATTCTTGGCAAGGCAGGCCTCATTC
CGCAAGAAACTGCCCTGGCCTGGTTCCAAACCGGTGTGATCTCCCCAGCG
GGAACATACAACTACTGGGCAGACCCTTACACACTTTTCGTCCTGGAAAT
GGCACTCATGGGATTTGCCGAGCACCGGAGATTCCAAGACTGGGCAAATC
CAGGATCAATGGGCAGGCAATACTTCCTCGGATTCGAGAAATACTTGGGA
GGATCCGGCGATCCGGCTTACCCTGGAGGACCTCTATTCAACCCTCTGGG
TCTTGGGAAAGATGAGAAGTCAATGAAGGATTTCAAGCTCAAGGAAGTGA
AGAATGGAAGATTGGCAATGTTGGCAATCTTGGGTTACTTTGTTCAAGGT
CTTGTTACAGGAGTTGGGCCTTACCAGAACCTATTGGATCACTTGGCTGA
TCCTGTAAACAACAATGTTTTGACTAGCCTCAAGTTTCACTGAGAGAGAA
ATTTCTGATCATTGCTTGGGATTATATATTCCAAGCCTTNNNATCCCCCA
CTN
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