CK934358
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK934358 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 6.400e-24 Identity = 84/251 (33.47%), Postives = 120/251 (47.81%), Query Frame = 3 Query: 129 LGARSAQSPTGSSRKGS--FVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGLIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVISPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 869 +G S +P+ S + F A ++ V A+ WF + ++LDGS PGD+GFDPLGL+ PE E E+ + R+AML G + PE LG + + A G + G W + T+ +E + FAE +R + +P +KY GG+ DP KD ++ KLKE+KNGRLAMLA +G+ V Q G GP +NL HLADP +NN+ Sbjct: 13 VGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAE---WFPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKE------SEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAA-LPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTME-KDPEK---------KKYPGGAFDP----------LGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 233
BLAST of CK934358 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 3.176e-23 Identity = 84/228 (36.84%), Postives = 112/228 (49.12%), Query Frame = 3 Query: 219 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGLIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-ISPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 866 GADR L+ S SYL G PGDYG+D GLS DPE E EVI+ R+A+ +G + PE+L + G+ E WF+ G I G ++ +P ++ ++ LMG E GR + YLGGS DP D + + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL DPVNNN Sbjct: 50 GADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEGLSADPETFAKNREL------EVIHCRWAIAVGLGCVFPELLARNGVKFGEGV--WFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAG-------GRLGEVVDPLYLGGSFDPL----------GLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNN 252
BLAST of CK934358 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 3.176e-23 Identity = 84/230 (36.52%), Postives = 113/230 (49.13%), Query Frame = 3 Query: 219 GADRPLW---FASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGLIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-ISPAGTYNYWADPYTLFV--------LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 866 G +R W ++ + +YL G PGDYG+D GLS DPE E E+I+ R+AMLGA+G PE+L K+G E WF+ G I G +Y +P + +++ LMG E R N G G G + Y G S DP D + + K+KE+KNGRLA ++ G+FVQ +VTG GP QNL DHLA+P NN Sbjct: 38 GPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYREL------ELIHARWAMLGALGCQTPELLAKSGTKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYR----VNGGPAGE----GLDPLYPGESFDPL----------GLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNN 241
BLAST of CK934358 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 5.418e-23 Identity = 87/248 (35.08%), Postives = 117/248 (47.18%), Query Frame = 3 Query: 162 SSRKGSFVV-RAASTPPVKQGADRPL-WFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGLIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-ISPAGTYNYWADPYTL--------FVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 866 S++KG+ V +++S+ G D W Q G PGDYG+D GLS DPE E E+I+ R +LGA+G + PE+L I A WF+ G I G NY +P + +++ LMG E R N G G G + Y G + DP D + + K+KE+KNGRLAM A LG+FVQ +VTG GP +NL DHLA+P NN Sbjct: 39 STKKGAKAVSKSSSSANQFYGPDATSGWDLQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYREL------ELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYR----VNGGPAGE----GLDPLYPGEAFDPL----------GLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENN 262
BLAST of CK934358 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 7.076e-23 Identity = 84/246 (34.15%), Postives = 113/246 (45.93%), Query Frame = 3 Query: 162 SSRKGSFVVRAASTPPVKQGADRPL--------WFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGLIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVISPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 869 SS K F A+ PV GA + W + SYLDGS PGD+GFD LGL + P E E+I+ R+AML G I PE LG + + A G + G W T+ +E + F EH+R + + +KY GG+ DP KD ++ K+KE+KNGRLA+LAI+G+ V Q G GP +NL HLADP +NN+ Sbjct: 20 SSTKSKF----AAAMPVYVGATNFMSRFSMSADWMPGQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKE------SELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAA-IPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEK----------KKYPGGAFDPL----------GYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNNI 234
BLAST of CK934358 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 8.650e-21 Identity = 67/175 (38.29%), Postives = 94/175 (53.71%), Query Frame = 3 Query: 369 EVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-ISPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 866 EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G +Y +P ++ ++ LMG E R G +G + Y GGS DP D +++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN Sbjct: 89 EVIHSRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAG----GPLGE---VTDPIYPGGSFDPL----------GLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 244
BLAST of CK934358 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 4.018e-18 Identity = 81/260 (31.15%), Postives = 113/260 (43.46%), Query Frame = 3 Query: 225 DRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEG-----------------TGGLI--------------EPKWLAYG-------EVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVISPAGTYNYWADPY-----TLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLG-FEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 872 DRPLW+ S +LDGSL GDYGFDP GL P G +I +P +G E+I+GR+AML +GA++ E L T + W G + +Y P TL +E+ ++G+ E FQ A S R Y G F LG + DP EK+ + +L E+K+ RLAM+A LG+ VQ TG GP N HL+DP++ ++ Sbjct: 54 DRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWL---------TGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIE---FQRNAELDSEKRLYPGGKFFDPLGLAADP----------------EKTAQ-LQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTII 284
BLAST of CK934358 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 5.802e-17 Identity = 72/219 (32.88%), Postives = 99/219 (45.21%), Query Frame = 3 Query: 261 SYLDGSLPGDYGFDPLGLSDPEGTGGLIEPKWLAYG---EVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-ISPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 881 SYL G PGDYG+D GLS P+ A EVI+ R AM A+G I PE+L G E WF+ G I G +Y +P ++ ++ LMG E R LG DP Y +D ++ + K+KE+KNGRLAM ++ G+FVQ +V+ +NL DHL VNNN L+++ Sbjct: 71 SYLTGEFPGDYGWDTAGLS--------AYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIARGP----------------LGEVTDPLYPGSFDSLGLA--EDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNV 261
BLAST of CK934358 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 1.094e-15 Identity = 73/219 (33.33%), Postives = 94/219 (42.92%), Query Frame = 3 Query: 234 LWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGLIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVISPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAN--PGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 881 LWF + + + L G P D GFDPL L+ DP+ + EV +GR AML VG I PE+LGK AWF+ G D L + MA+ E+ R Q N G + R Y GF DP + + EVKNGRLA+ A+ G Q L TG P NL HLA+P+ N+ T+L Sbjct: 189 LWFPNAEPPALLTGEYPADRGFDPLNLAADPDVYARM------RVAEVFHGRLAMLCTVGCIVPELLGKG---------AWFEAGDS---------VDGLKLGFITMAIAAPTEYWRGQGGFNWQKGELDRSY-PGF--------DPL---------------NLTTDYTRAAEVKNGRLALTAVAGLTAQYLATGESPLANLSAHLANPIGANITTNL 359
BLAST of CK934358 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 7.092e-15 Identity = 72/244 (29.51%), Postives = 108/244 (44.26%), Query Frame = 3 Query: 111 ETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGLIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVISPA-GTYNYWADPYTLFVLEMALMGFAEHRRFQD----------WANPGSMGRQYF---LGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQ 797 ++++ +L S S+ VV AA+ P K + +LDGSLPGD+GFDPLGL DP KW E+I+GR+AML +G +G+A T + WF+ G A +++ TL ++ LMG+ E +R+ D WA P S + F G + Y GG D ++ KL E+K+ RLAMLA+L ++ + Sbjct: 24 KSSQSLLFVNSKVGAGVSTTSRKLVVVAAAAAPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFL------KWYREAELIHGRWAMLAVLGI----FVGQAW-----TGIPWFEAGADPGAVAPFSFG----TLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFE 248 The following BLAST results are available for this feature:
BLAST of CK934358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 79
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934358 ID=CK934358; Name=CK934358; organism=Citrus sinensis; type=EST; length=953bpback to top |