CK934363

Overview
NameCK934363
Unique NameCK934363
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length835
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934363 vs. ExPASy Swiss-Prot
Match: IPI3_CANAL (Pre-rRNA-processing protein IPI3 OS=Candida albicans GN=IPI3 PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.601e-15
Identity = 45/147 (30.61%), Postives = 81/147 (55.10%), Query Frame = 3
Query:  408 IAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIWS---LLTVFEECESQRASHLYLHSFTGHTLRITDIVIG--YGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIAWDPAEHVFXXG 833
            +AGG +SG +Y+WE++SG LL    AHY+ +T +  S  G+FLI+G ED    +W+   L++++++ + Q   +  +   T +TL +TD+ +   +      + + SED T +++ ++   LL   + PS  + I  DPA      G
Sbjct:  123 LAGGSKSGKLYIWELSSGNLLCVRDAHYQGITTIKGSSCGTFLITGGEDARCLVWNLAELISIYDKSDHQVKPYWQI---TDNTLPLTDLCLNDTHNINDLKLYTTSEDSTVRIYDIVTKSLLTTFILPSSAECITKDPANRALYVG 266          
BLAST of CK934363 vs. ExPASy Swiss-Prot
Match: IPI3_LODEL (Pre-rRNA-processing protein IPI3 OS=Lodderomyces elongisporus GN=IPI3 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.427e-13
Identity = 44/156 (28.21%), Postives = 75/156 (48.08%), Query Frame = 3
Query:  408 IAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIWSLLTVF------------EECESQRASHLYLHSFTGHTLRITDIVIGYGG--VSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIAWDPAEHVFXXG 833
            + GG + G +Y+WE+ASG LL    AHY+ +T +  S  G+FL++G ED  + +W+L  +             +   +   S    +S T +TL ITD  +   G      + +AS+D T +++ +   + L   + P  +  +A DPA      G
Sbjct:  129 LCGGSKLGKLYIWELASGDLLCVKEAHYQGITRIDLSLCGTFLVTGGEDARIMVWNLADLIAIYGQAGLINETDSSSTVNRSGKPYYSITDNTLPITDFTLNQVGNLADLKLYTASKDSTVRIYDITTKQQLTTFILPQPVTCLARDPANRQLYAG 284          
BLAST of CK934363 vs. ExPASy Swiss-Prot
Match: YY46_ANASP (Uncharacterized WD repeat-containing protein alr3466 OS=Anabaena sp. (strain PCC 7120) GN=alr3466 PE=4 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.152e-13
Identity = 41/130 (31.54%), Postives = 69/130 (53.08%), Query Frame = 3
Query:  372 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL 761
            +  +A N  G+ +A G     + +WE++S + L  +  H   V+ + FS DG+ L SGS+D  VR+WS+ +   EC         L++F GHT  +  ++    G  A + S S D+T ++WS+  G+ L
Sbjct: 1287 VNSVAFNPDGSMLASGSGDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWSISS--GEC---------LYTFLGHTNWVGSVIFSPDG--AILASGSGDQTVRLWSISSGKCL 1403          

HSP 2 Score: 68.9366 bits (167), Expect = 3.886e-11
Identity = 41/127 (32.28%), Postives = 60/127 (47.24%), Query Frame = 3
Query:  381 IAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL 761
            +A +  G   A G   G +  WE A+G+ L     H   V  + FSQDG  L SGS+D  VR+W +           +S   L +F GHT R+  +V  +   S  + S S D+T ++W +  G  L
Sbjct:  870 VAFSPDGKLFATGDSGGIVRFWEAATGKELLTCKGHNSWVNSVGFSQDGKMLASGSDDQTVRLWDI-----------SSGQCLKTFKGHTSRVRSVV--FSPNSLMLASGSSDQTVRLWDISSGECL 983          

HSP 3 Score: 68.1662 bits (165), Expect = 6.629e-11
Identity = 37/130 (28.46%), Postives = 61/130 (46.92%), Query Frame = 3
Query:  372 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL 761
            +  +  N  G+ +A G     + +WE+ S + L  +  H   V  +VF+ DGS L SGS D  VR+W +           +S   LH+F GHT  +  +     G  + + S S D+T ++W +   + L
Sbjct: 1203 VNSVVFNPDGSTLASGSSDQTVRLWEINSSKCLCTFQGHTSWVNSVVFNPDGSMLASGSSDKTVRLWDI-----------SSSKCLHTFQGHTNWVNSVAFNPDG--SMLASGSGDQTVRLWEISSSKCL 1319          
BLAST of CK934363 vs. ExPASy Swiss-Prot
Match: KTNB1_DANRE (Katanin p80 WD40-containing subunit B1 OS=Danio rerio GN=katnb1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.061e-12
Identity = 63/234 (26.92%), Postives = 107/234 (45.73%), Query Frame = 3
Query:  102 NKLVKSIKMELLIA-SSSVADAGIGCWD---LESGAEQLRYKSCA-SPPHGL-------ACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSH--GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL 761
            N  + S K++ ++A SS+V+   +G      L +G E  R    A S P+ +       + VG     SS+ R    + SGS+  W     ++ +++L        + + H  G Y+A G    +I +W+V     + ++  H +AV CL FS DG +L S S+D  V++W L+           +   +  FT HT  +   V+ +      + S S DRT K+W L K  ++
Sbjct:    5 NTTITSWKLQEIVAHSSNVSSLVLGKSSGRLLATGGEDCRVNIWAVSKPNCIMSLTGHTSAVGCIQFNSSEERVVAGSLSGSLRLWDLEAAKI-LRTLMGHKASISSLDFHPMGEYLASGSVDSNIKLWDVRRKGCVFRYKGHTQAVRCLAFSPDGKWLASASDDSTVKLWDLI-----------AGKMITEFTSHTSAVN--VVQFHPNEYLLASGSADRTVKLWDLEKFNMI 224          
BLAST of CK934363 vs. ExPASy Swiss-Prot
Match: PKWA_THECU (Probable serine/threonine-protein kinase pkwA OS=Thermomonospora curvata GN=pkwA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.515e-12
Identity = 48/169 (28.40%), Postives = 73/169 (43.20%), Query Frame = 3
Query:  309 SILYWSWSKPQVEVK----SLPAEPIKP-----------------IAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG 752
            S L W W+ P+  ++    + P+E   P                 +A +  G+ +AGG     I++W+VASG  L     H   V  + FS DG+ L SGS+D  VR+W +    E              F GHT  + DI     G  + + S S D T ++W++  G
Sbjct:  420 SFLVWQWTLPETPLRPDSSTAPSESADPHELNEPRILTTDREAVAVAFSPGGSLLAGGSGDKLIHVWDVASGDELHTLEGHTDWVRAVAFSPDGALLASGSDDATVRLWDVAAAEERA-----------VFEGHTHYVLDIAFSPDG--SMVASGSRDGTARLWNVATG 575          

HSP 2 Score: 72.0182 bits (175), Expect = 4.591e-12
Identity = 54/204 (26.47%), Postives = 91/204 (44.61%), Query Frame = 3
Query:  135 LIASSSVADAGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSK-PQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSL 743
            ++AS S  D     W++ +G E    K      + +A      + +S  R+      G+I  W  +   + +V   PAE +  +A +  G+ +  G  S  +++W+VASG  L  +  H   V  + FS DG+ L SGS+D  +R+W +    E             +  GHT  +  +     G   T+ SASED T ++W +
Sbjct:  557 MVASGS-RDGTARLWNVATGTEHAVLKGHTDYVYAVAFSPDGSMVASGSRD------GTIRLWDVATGKERDVLQAPAENVVSLAFSPDGSMLVHGSDS-TVHLWDVASGEALHTFEGHTDWVRAVAFSPDGALLASGSDDRTIRLWDVAAQEEHT-----------TLEGHTEPVHSVAFHPEG--TTLASASEDGTIRIWPI 739          
BLAST of CK934363 vs. ExPASy Swiss-Prot
Match: PWP2_SCHPO (Periodic tryptophan protein 2 homolog OS=Schizosaccharomyces pombe GN=SPBC713.04c PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.278e-11
Identity = 45/163 (27.61%), Postives = 79/163 (48.47%), Query Frame = 3
Query:  354 SLPAEPIKPIAANSHGTYIA-GGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVI--DAIAWDPAEHVFXXG 833
            S+    I  +  NS G +IA G  + G + +WE  S   + K  +HY A++ L +S DG  +I+G++DG +++W + + F            + +FT HT  ++ +     G    + S+S D + + W L++ R  R    PS +    IA DP+  +   G
Sbjct:  293 SITQSNIDTLTVNSTGDWIAIGSSKLGQLLVWEWQSESYVLKQQSHYDALSTLQYSSDGQRIITGADDGKIKVWDMNSGF-----------CIVTFTQHTSAVSGLCFSKRG--NVLFSSSLDGSVRAWDLIRYRNFRTFTAPSRVQFSCIAVDPSGEIVCAG 442          
The following BLAST results are available for this feature:
BLAST of CK934363 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
IPI3_CANAL2.601e-1530.61Pre-rRNA-processing protein IPI3 OS=Candida albica... [more]
IPI3_LODEL1.427e-1328.21Pre-rRNA-processing protein IPI3 OS=Lodderomyces e... [more]
YY46_ANASP4.152e-1331.54Uncharacterized WD repeat-containing protein alr34... [more]
KTNB1_DANRE2.061e-1226.92Katanin p80 WD40-containing subunit B1 OS=Danio re... [more]
PKWA_THECU3.515e-1228.40Probable serine/threonine-protein kinase pkwA OS=T... [more]
PWP2_SCHPO2.278e-1127.61Periodic tryptophan protein 2 homolog OS=Schizosac... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_H10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934363 ID=CK934363; Name=CK934363; organism=Citrus sinensis; type=EST; length=835bp
GGGAAATTCAGCGGAGGAGTATCTTCCGTTACAAAAATATATATACGTGA
TCTTGATCAAGAACTAGCCGGCAACCGCACTTCAAATGTGAAAAAAAACA
AAACAAACTTGTCAAATCAATCAAAATGGAGTTGCTAATCGCATCATCGT
CAGTCGCCGATGCCGGTATCGGGTGCTGGGACCTAGAATCAGGTGCCGAG
CAGCTCCGATACAAATCGTGCGCCTCACCTCCGCACGGACTCGCTTGTGT
GGGCCAACGCTTCCTCGCCTCCTCGCAGCTTCGCGAACAACCTTCCGCCT
CGTCCGGTTCCATCCTTTACTGGTCCTGGTCCAAGCCTCAGGTAGAAGTG
AAGAGCTTACCAGCTGAGCCGATTAAGCCGATTGCTGCTAATAGCCACGG
CACCTATATTGCTGGTGGGGGTCAATCGGGAGATATCTACATGTGGGAGG
TTGCAAGTGGCAGATTATTAAAGAAGTGGCACGCGCATTATAGGGCCGTT
ACTTGCTTGGTTTTTTCACAAGACGGTTCATTTCTGATTTCTGGGTCTGA
GGATGGATGTGTTAGAATTTGGTCACTTCTAACGGTATTTGAGGAGTGTG
AAAGCCAGCGGGCAAGCCATCTGTATTTGCATAGTTTTACTGGGCACACT
CTGCGTATAACTGATATTGTTATTGGCTATGGAGGAGTTAGTGCAACTAT
AGTGTCAGCTTCTGAGGATCGAACTTGCAAGGTGTGGAGCCTATTGAAGG
GAAGATTGTTGAGAAATATTGTATTCCCTTCAGTAATTGATGCAATTGCA
TGGGACCCCGCTGAACATGTCTTTTANNNCGGCAG
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