CK934370

Overview
NameCK934370
Unique NameCK934370
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length833
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6283 contig Csv1_Contig6283:764..1597. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
[Close]
BLAST of CK934370 vs. ExPASy Swiss-Prot
Match: PSBI_STAPU (Photosystem II reaction center protein I OS=Staurastrum punctulatum GN=psbI PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.023e-11
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 2 
Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLF+FGFLSNDP RNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFVFGFLSNDPTRNPGRKE 36
[Close]
BLAST of CK934370 vs. ExPASy Swiss-Prot
Match: PSBI_ANTFO (Photosystem II reaction center protein I OS=Anthoceros formosae GN=psbI PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.023e-11
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 2 
Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLF+FGFLSNDP RNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFVFGFLSNDPKRNPGRKE 36
[Close]
BLAST of CK934370 vs. ExPASy Swiss-Prot
Match: PSBI_ADICA (Photosystem II reaction center protein I OS=Adiantum capillus-veneris GN=psbI PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.023e-11
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 2 
Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVY VVIFFVSLF+FGFLSNDPGRNPGR++
Sbjct:    1 MLTLKLFVYAVVIFFVSLFVFGFLSNDPGRNPGRKD 36
[Close]
BLAST of CK934370 vs. ExPASy Swiss-Prot
Match: PSBI_WELMI (Photosystem II reaction center protein I OS=Welwitschia mirabilis GN=psbI PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.744e-11
Identity = 31/36 (86.11%), Postives = 35/36 (97.22%), Query Frame = 2 
Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLK+FVYTVV FF+SLF+FGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKVFVYTVVTFFISLFLFGFLSNDPGRNPGRKE 36
[Close]
BLAST of CK934370 vs. ExPASy Swiss-Prot
Match: PSBI_OEDCA (Photosystem II reaction center protein I OS=Oedogonium cardiacum GN=psbI PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.278e-11
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = 2 
Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLK+FVYTVV FFVSLF+FGFLSNDPGRNPG+ E
Sbjct:    1 MLTLKIFVYTVVTFFVSLFVFGFLSNDPGRNPGKRE 36
[Close]
BLAST of CK934370 vs. ExPASy Swiss-Prot
Match: PSBI_CHLVU (Photosystem II reaction center protein I OS=Chlorella vulgaris GN=psbI PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.278e-11
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 2 
Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLK+FVYTVV FFVSLFIFGFLSNDPGRNPG+ E
Sbjct:    1 MLTLKIFVYTVVTFFVSLFIFGFLSNDPGRNPGQRE 36
[Close]
BLAST of CK934370 vs. ExPASy Swiss-Prot
Match: PSBI_NEPOL (Photosystem II reaction center protein I OS=Nephroselmis olivacea GN=psbI PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.629e-11
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = 2 
Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLK+FVYTVV FFVSLFIFGFLSNDPGRNPG ++
Sbjct:    1 MLTLKIFVYTVVTFFVSLFIFGFLSNDPGRNPGTKD 36
The following BLAST results are available for this feature:
BLAST of CK934370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
PSBI_STAPU1.023e-1191.67Photosystem II reaction center protein I OS=Staura... [more]
PSBI_ANTFO1.023e-1191.67Photosystem II reaction center protein I OS=Anthoc... [more]
PSBI_ADICA1.023e-1188.89Photosystem II reaction center protein I OS=Adiant... [more]
PSBI_WELMI1.744e-1186.11Photosystem II reaction center protein I OS=Welwit... [more]
PSBI_OEDCA2.278e-1186.11Photosystem II reaction center protein I OS=Oedogo... [more]
PSBI_CHLVU2.278e-1188.89Photosystem II reaction center protein I OS=Chlore... [more]
PSBI_NEPOL6.629e-1186.11Photosystem II reaction center protein I OS=Nephro... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_G09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934370 ID=CK934370; Name=CK934370; organism=Citrus sinensis; type=EST; length=833bp
GGGAACCAAAATGTAGAATTCTAATTGTGTGAATTTAATTTATGAAAACG
ATTTTCTATTTAGAGAATCAAATTCTAAAAAGAACTTCATTTCTTGATGT
CAAAATTGGATATGTAGTATAAAAATAGAGAATCTATTCTCTTTTTCCTT
TTCCCCAAAAACCTGATTTGGAGATTGTGTAATGCTTACTCTCAAACTCT
TTGTTTACACCGTAGTGATATTCTTTGTTTCGCTCTTCATCTTCGGATTC
CTGTCTAATGATCCAGGGCGTAATCCCGGACGCGAAGAATAAAAAAGGAA
GGAGTTGCTTACTTTATTCGTATAAACGTTCTTAGGATTTTTTGATTCCC
AGTTACTATTAAAAATAAAGTAAAAGTGTTCGCTAAAGTTAAATTTGAAA
AATACCAAGCCATCGCCCGAAACGGAAAGAGAGGGATTCGAACCCTCGGT
ACGAAGAACTCGTACACCGGATCAGCAATCCGACGCTTTAATCCACTCAG
CCATCTCTCCTAATTGAAAATAAAAAAAAAAAAAATGACTATGTTACATT
ACACAAAAAATAATGCTTGAAAAAGCCCGTCTTTACTTGATTTTCTATCT
TTACTTTCTATATTCTCTTCTATATTCTCTAGAAGAGAATATAGAAAGTA
AATTGATTATATAGCTCATAGAAAATATAGCTTATAGAATTTCTTTTTTT
TTATTGTCTTTTGTATTCTATTATATAAATAGATATAACTTTTATCAGCA
ATTCCATTTCTATCATTTTTCGAAAATTAAAATAAAGAAAGTATTCGAAA
GAGATAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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