CK934370

Overview
NameCK934370
Unique NameCK934370
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length833
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6283 contig Csv1_Contig6283:764..1597. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
[Close]
BLAST of CK934370 vs. ExPASy Swiss-Prot
Match: PSBI_PANGI (Photosystem II reaction center protein I OS=Panax ginseng GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.179e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CK934370 vs. ExPASy Swiss-Prot
Match: PSBI_OLIPU (Photosystem II reaction center protein I OS=Olimarabidopsis pumila GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.179e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CK934370 vs. ExPASy Swiss-Prot
Match: PSBI_OENPA (Photosystem II reaction center protein I OS=Oenothera parviflora GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.179e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CK934370 vs. ExPASy Swiss-Prot
Match: PSBI_OENGL (Photosystem II reaction center protein I OS=Oenothera glazioviana GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.179e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CK934370 vs. ExPASy Swiss-Prot
Match: PSBI_OENEH (Photosystem II reaction center protein I OS=Oenothera elata subsp. hookeri GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.179e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CK934370 vs. ExPASy Swiss-Prot
Match: PSBI_OENBI (Photosystem II reaction center protein I OS=Oenothera biennis GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.179e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CK934370 vs. ExPASy Swiss-Prot
Match: PSBI_OENAR (Photosystem II reaction center protein I OS=Oenothera argillicola GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.179e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CK934370 vs. ExPASy Swiss-Prot
Match: PSBI_NYMAL (Photosystem II reaction center protein I OS=Nymphaea alba GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.179e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CK934370 vs. ExPASy Swiss-Prot
Match: PSBI_NICTO (Photosystem II reaction center protein I OS=Nicotiana tomentosiformis GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.179e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CK934370 vs. ExPASy Swiss-Prot
Match: PSBI_NICSY (Photosystem II reaction center protein I OS=Nicotiana sylvestris GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.179e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
The following BLAST results are available for this feature:
BLAST of CK934370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
PSBI_PANGI3.179e-13100.00Photosystem II reaction center protein I OS=Panax ... [more]
PSBI_OLIPU3.179e-13100.00Photosystem II reaction center protein I OS=Olimar... [more]
PSBI_OENPA3.179e-13100.00Photosystem II reaction center protein I OS=Oenoth... [more]
PSBI_OENGL3.179e-13100.00Photosystem II reaction center protein I OS=Oenoth... [more]
PSBI_OENEH3.179e-13100.00Photosystem II reaction center protein I OS=Oenoth... [more]
PSBI_OENBI3.179e-13100.00Photosystem II reaction center protein I OS=Oenoth... [more]
PSBI_OENAR3.179e-13100.00Photosystem II reaction center protein I OS=Oenoth... [more]
PSBI_NYMAL3.179e-13100.00Photosystem II reaction center protein I OS=Nympha... [more]
PSBI_NICTO3.179e-13100.00Photosystem II reaction center protein I OS=Nicoti... [more]
PSBI_NICSY3.179e-13100.00Photosystem II reaction center protein I OS=Nicoti... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004259_G09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934370 ID=CK934370; Name=CK934370; organism=Citrus sinensis; type=EST; length=833bp
GGGAACCAAAATGTAGAATTCTAATTGTGTGAATTTAATTTATGAAAACG
ATTTTCTATTTAGAGAATCAAATTCTAAAAAGAACTTCATTTCTTGATGT
CAAAATTGGATATGTAGTATAAAAATAGAGAATCTATTCTCTTTTTCCTT
TTCCCCAAAAACCTGATTTGGAGATTGTGTAATGCTTACTCTCAAACTCT
TTGTTTACACCGTAGTGATATTCTTTGTTTCGCTCTTCATCTTCGGATTC
CTGTCTAATGATCCAGGGCGTAATCCCGGACGCGAAGAATAAAAAAGGAA
GGAGTTGCTTACTTTATTCGTATAAACGTTCTTAGGATTTTTTGATTCCC
AGTTACTATTAAAAATAAAGTAAAAGTGTTCGCTAAAGTTAAATTTGAAA
AATACCAAGCCATCGCCCGAAACGGAAAGAGAGGGATTCGAACCCTCGGT
ACGAAGAACTCGTACACCGGATCAGCAATCCGACGCTTTAATCCACTCAG
CCATCTCTCCTAATTGAAAATAAAAAAAAAAAAAATGACTATGTTACATT
ACACAAAAAATAATGCTTGAAAAAGCCCGTCTTTACTTGATTTTCTATCT
TTACTTTCTATATTCTCTTCTATATTCTCTAGAAGAGAATATAGAAAGTA
AATTGATTATATAGCTCATAGAAAATATAGCTTATAGAATTTCTTTTTTT
TTATTGTCTTTTGTATTCTATTATATAAATAGATATAACTTTTATCAGCA
ATTCCATTTCTATCATTTTTCGAAAATTAAAATAAAGAAAGTATTCGAAA
GAGATAAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top