CK934370

Overview
NameCK934370
Unique NameCK934370
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length833
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6283 contig Csv1_Contig6283:764..1597. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
[Close]
BLAST of CK934370 vs. ExPASy Swiss-Prot
Match: PSBI_LACSA (Photosystem II reaction center protein I OS=Lactuca sativa GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.179e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CK934370 vs. ExPASy Swiss-Prot
Match: PSBI_IPOPU (Photosystem II reaction center protein I OS=Ipomoea purpurea GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.179e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CK934370 vs. ExPASy Swiss-Prot
Match: PSBI_ILLOL (Photosystem II reaction center protein I OS=Illicium oligandrum GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.179e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CK934370 vs. ExPASy Swiss-Prot
Match: PSBI_HORVU (Photosystem II reaction center protein I OS=Hordeum vulgare GN=psbI PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.179e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CK934370 vs. ExPASy Swiss-Prot
Match: PSBI_HELAN (Photosystem II reaction center protein I OS=Helianthus annuus GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.179e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CK934370 vs. ExPASy Swiss-Prot
Match: PSBI_GUIAB (Photosystem II reaction center protein I OS=Guizotia abyssinica GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.179e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CK934370 vs. ExPASy Swiss-Prot
Match: PSBI_GOSHI (Photosystem II reaction center protein I OS=Gossypium hirsutum GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.179e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CK934370 vs. ExPASy Swiss-Prot
Match: PSBI_GOSBA (Photosystem II reaction center protein I OS=Gossypium barbadense GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.179e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CK934370 vs. ExPASy Swiss-Prot
Match: PSBI_FAGEA (Photosystem II reaction center protein I OS=Fagopyrum esculentum subsp. ancestrale GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.179e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CK934370 vs. ExPASy Swiss-Prot
Match: PSBI_EUCGG (Photosystem II reaction center protein I OS=Eucalyptus globulus subsp. globulus GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.179e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
The following BLAST results are available for this feature:
BLAST of CK934370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
PSBI_LACSA3.179e-13100.00Photosystem II reaction center protein I OS=Lactuc... [more]
PSBI_IPOPU3.179e-13100.00Photosystem II reaction center protein I OS=Ipomoe... [more]
PSBI_ILLOL3.179e-13100.00Photosystem II reaction center protein I OS=Illici... [more]
PSBI_HORVU3.179e-13100.00Photosystem II reaction center protein I OS=Hordeu... [more]
PSBI_HELAN3.179e-13100.00Photosystem II reaction center protein I OS=Helian... [more]
PSBI_GUIAB3.179e-13100.00Photosystem II reaction center protein I OS=Guizot... [more]
PSBI_GOSHI3.179e-13100.00Photosystem II reaction center protein I OS=Gossyp... [more]
PSBI_GOSBA3.179e-13100.00Photosystem II reaction center protein I OS=Gossyp... [more]
PSBI_FAGEA3.179e-13100.00Photosystem II reaction center protein I OS=Fagopy... [more]
PSBI_EUCGG3.179e-13100.00Photosystem II reaction center protein I OS=Eucaly... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_G09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934370 ID=CK934370; Name=CK934370; organism=Citrus sinensis; type=EST; length=833bp
GGGAACCAAAATGTAGAATTCTAATTGTGTGAATTTAATTTATGAAAACG
ATTTTCTATTTAGAGAATCAAATTCTAAAAAGAACTTCATTTCTTGATGT
CAAAATTGGATATGTAGTATAAAAATAGAGAATCTATTCTCTTTTTCCTT
TTCCCCAAAAACCTGATTTGGAGATTGTGTAATGCTTACTCTCAAACTCT
TTGTTTACACCGTAGTGATATTCTTTGTTTCGCTCTTCATCTTCGGATTC
CTGTCTAATGATCCAGGGCGTAATCCCGGACGCGAAGAATAAAAAAGGAA
GGAGTTGCTTACTTTATTCGTATAAACGTTCTTAGGATTTTTTGATTCCC
AGTTACTATTAAAAATAAAGTAAAAGTGTTCGCTAAAGTTAAATTTGAAA
AATACCAAGCCATCGCCCGAAACGGAAAGAGAGGGATTCGAACCCTCGGT
ACGAAGAACTCGTACACCGGATCAGCAATCCGACGCTTTAATCCACTCAG
CCATCTCTCCTAATTGAAAATAAAAAAAAAAAAAATGACTATGTTACATT
ACACAAAAAATAATGCTTGAAAAAGCCCGTCTTTACTTGATTTTCTATCT
TTACTTTCTATATTCTCTTCTATATTCTCTAGAAGAGAATATAGAAAGTA
AATTGATTATATAGCTCATAGAAAATATAGCTTATAGAATTTCTTTTTTT
TTATTGTCTTTTGTATTCTATTATATAAATAGATATAACTTTTATCAGCA
ATTCCATTTCTATCATTTTTCGAAAATTAAAATAAAGAAAGTATTCGAAA
GAGATAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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