CK934370

Overview
NameCK934370
Unique NameCK934370
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length833
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6283 contig Csv1_Contig6283:764..1597. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
[Close]
BLAST of CK934370 vs. ExPASy Swiss-Prot
Match: PSBI_DRIGR (Photosystem II reaction center protein I OS=Drimys granadensis GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.179e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CK934370 vs. ExPASy Swiss-Prot
Match: PSBI_DRANE (Photosystem II reaction center protein I OS=Draba nemorosa GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.179e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CK934370 vs. ExPASy Swiss-Prot
Match: PSBI_DIOEL (Photosystem II reaction center protein I OS=Dioscorea elephantipes GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.179e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CK934370 vs. ExPASy Swiss-Prot
Match: PSBI_DAUCA (Photosystem II reaction center protein I OS=Daucus carota GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.179e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CK934370 vs. ExPASy Swiss-Prot
Match: PSBI_CUCSA (Photosystem II reaction center protein I OS=Cucumis sativus GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.179e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CK934370 vs. ExPASy Swiss-Prot
Match: PSBI_CRUWA (Photosystem II reaction center protein I OS=Crucihimalaya wallichii GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.179e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CK934370 vs. ExPASy Swiss-Prot
Match: PSBI_COFAR (Photosystem II reaction center protein I OS=Coffea arabica GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.179e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CK934370 vs. ExPASy Swiss-Prot
Match: PSBI_CITSI (Photosystem II reaction center protein I OS=Citrus sinensis GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.179e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CK934370 vs. ExPASy Swiss-Prot
Match: PSBI_CHLSC (Photosystem II reaction center protein I OS=Chloranthus spicatus GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.179e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CK934370 vs. ExPASy Swiss-Prot
Match: PSBI_CERDE (Photosystem II reaction center protein I OS=Ceratophyllum demersum GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.179e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
The following BLAST results are available for this feature:
BLAST of CK934370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
PSBI_DRIGR3.179e-13100.00Photosystem II reaction center protein I OS=Drimys... [more]
PSBI_DRANE3.179e-13100.00Photosystem II reaction center protein I OS=Draba ... [more]
PSBI_DIOEL3.179e-13100.00Photosystem II reaction center protein I OS=Diosco... [more]
PSBI_DAUCA3.179e-13100.00Photosystem II reaction center protein I OS=Daucus... [more]
PSBI_CUCSA3.179e-13100.00Photosystem II reaction center protein I OS=Cucumi... [more]
PSBI_CRUWA3.179e-13100.00Photosystem II reaction center protein I OS=Crucih... [more]
PSBI_COFAR3.179e-13100.00Photosystem II reaction center protein I OS=Coffea... [more]
PSBI_CITSI3.179e-13100.00Photosystem II reaction center protein I OS=Citrus... [more]
PSBI_CHLSC3.179e-13100.00Photosystem II reaction center protein I OS=Chlora... [more]
PSBI_CERDE3.179e-13100.00Photosystem II reaction center protein I OS=Cerato... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_G09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934370 ID=CK934370; Name=CK934370; organism=Citrus sinensis; type=EST; length=833bp
GGGAACCAAAATGTAGAATTCTAATTGTGTGAATTTAATTTATGAAAACG
ATTTTCTATTTAGAGAATCAAATTCTAAAAAGAACTTCATTTCTTGATGT
CAAAATTGGATATGTAGTATAAAAATAGAGAATCTATTCTCTTTTTCCTT
TTCCCCAAAAACCTGATTTGGAGATTGTGTAATGCTTACTCTCAAACTCT
TTGTTTACACCGTAGTGATATTCTTTGTTTCGCTCTTCATCTTCGGATTC
CTGTCTAATGATCCAGGGCGTAATCCCGGACGCGAAGAATAAAAAAGGAA
GGAGTTGCTTACTTTATTCGTATAAACGTTCTTAGGATTTTTTGATTCCC
AGTTACTATTAAAAATAAAGTAAAAGTGTTCGCTAAAGTTAAATTTGAAA
AATACCAAGCCATCGCCCGAAACGGAAAGAGAGGGATTCGAACCCTCGGT
ACGAAGAACTCGTACACCGGATCAGCAATCCGACGCTTTAATCCACTCAG
CCATCTCTCCTAATTGAAAATAAAAAAAAAAAAAATGACTATGTTACATT
ACACAAAAAATAATGCTTGAAAAAGCCCGTCTTTACTTGATTTTCTATCT
TTACTTTCTATATTCTCTTCTATATTCTCTAGAAGAGAATATAGAAAGTA
AATTGATTATATAGCTCATAGAAAATATAGCTTATAGAATTTCTTTTTTT
TTATTGTCTTTTGTATTCTATTATATAAATAGATATAACTTTTATCAGCA
ATTCCATTTCTATCATTTTTCGAAAATTAAAATAAAGAAAGTATTCGAAA
GAGATAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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